Ken Nagai
Kyoto University
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Publication
Featured researches published by Ken Nagai.
Nature | 2012
Yutaka Sumino; Ken Nagai; Yuji Shitaka; Dan Tanaka; Kenichi Yoshikawa; Hugues Chaté; Kazuhiro Oiwa
Spontaneous collective motion, as in some flocks of bird and schools of fish, is an example of an emergent phenomenon. Such phenomena are at present of great interest and physicists have put forward a number of theoretical results that so far lack experimental verification. In animal behaviour studies, large-scale data collection is now technologically possible, but data are still scarce and arise from observations rather than controlled experiments. Multicellular biological systems, such as bacterial colonies or tissues, allow more control, but may have many hidden variables and interactions, hindering proper tests of theoretical ideas. However, in systems on the subcellular scale such tests may be possible, particularly in in vitro experiments with only few purified components. Motility assays, in which protein filaments are driven by molecular motors grafted to a substrate in the presence of ATP, can show collective motion for high densities of motors and attached filaments. This was demonstrated recently for the actomyosin system, but a complete understanding of the mechanisms at work is still lacking. Here we report experiments in which microtubules are propelled by surface-bound dyneins. In this system it is possible to study the local interaction: we find that colliding microtubules align with each other with high probability. At high densities, this alignment results in self-organization of the microtubules, which are on average 15u2009µm long, into vortices with diameters of around 400u2009µm. Inside the vortices, the microtubules circulate both clockwise and anticlockwise. On longer timescales, the vortices form a lattice structure. The emergence of these structures, as verified by a mathematical model, is the result of the smooth, reptation-like motion of single microtubules in combination with local interactions (the nematic alignment due to collisions)—there is no need for long-range interactions. Apart from its potential relevance to cortical arrays in plant cells and other biological situations, our study provides evidence for the existence of previously unsuspected universality classes of collective motion phenomena.
Physical Review E | 2005
Hiroya Nakao; Kensuke Arai; Ken Nagai; Yasuhiro Tsubo; Yoshiki Kuramoto
The mechanism of phase synchronization between uncoupled limit-cycle oscillators induced by common external impulsive forcing is analyzed. By reducing the dynamics of the oscillator to a random phase map, it is shown that phase synchronization generally occurs when the oscillator is driven by weak external impulses in the limit of large inter-impulse intervals. The case where the inter-impulse intervals are finite is also analyzed perturbatively for small impulse intensity. For weak Poissonian impulses, it is shown that the phase synchronization persists up to the first order approximation.
Physical Review E | 2013
Ken Nagai; Fumi Takabatake; Yutaka Sumino; Hiroyuki Kitahata; Masatoshi Ichikawa; Natsuhiko Yoshinaga
Spontaneous rotation of a droplet induced by the Marangoni flow is analyzed in a two-dimensional system. The droplet with the small particle which supplies a surfactant at the interface is considered. We calculated flow field around the droplet using the Stokes equation and found that advective nonlinearity breaks symmetry for rotation. Theoretical calculation indicates that the droplet spontaneously rotates when the radius of the droplet is an appropriate size. The theoretical results were validated through comparison with the experiments.
Progress of Theoretical Physics Supplement | 2006
Ken Nagai; Yutaka Sumino; Hiroyuki Kitahata; Kenichi Yoshikawa
An alcohol (pentanol) droplet exhibits spontaneous motion on an aqueous solution, driven by a solutal Marangoni effect. We found that the mode of such droplet motion changes depending on the temperature of the aqueous phase. When the temperature of the aqueous phase is 20 °C, a droplet with a volume of 1 μl exhibits vectorial motion, whereas when the temperature is 25 °C, the droplet exhibits irregular motion. We discuss the mode change in relation to the solubility of pentanol in water.
Progress of Theoretical Physics Supplement | 2006
Hiroya Nakao; Ken Nagai; Kensuke Arai
Reproducibility of a noisy limit-cycle oscillator driven by a random piecewise constant signal is analyzed. By reducing the model to random phase maps, it is shown that the reproducibility of the limit cycle generally improves when the phase maps are monotonically increasing.
international symposium on micro-nanomechatronics and human science | 2005
Hiroyuki Kitahata; Yutaka Sumino; Ken Nagai; Kenichi Yoshikawa
Living organisms maintain their lives through the dissipation of chemical energy under isothermal conditions. They transduce chemical energy into macroscopic motion with high efficiency, but the mechanism is not fully understood yet. By considering experimental model systems together with experimental results reported for the molecular machinery, it would be possible to attain an essential understanding of mechanism on the chemo-mechanical energy transduction in living organisms. In the present paper, we introduce several simple experimental systems where spontaneous motion of a droplet is induced by chemical energy gradient or by photon flux
Physical Review E | 2005
Ken Nagai; Yutaka Sumino; Hiroyuki Kitahata; Kenichi Yoshikawa
Physical Review E | 2005
Ken Nagai; Hiroya Nakao; Yasuhiro Tsubo
Colloids and Surfaces B: Biointerfaces | 2007
Ken Nagai; Yutaka Sumino; Kenichi Yoshikawa
Physical Review E | 2009
Ken Nagai; Hiroya Nakao