Kevin G. Jones

A Group I intron in the nuclear small subunit rRNA gene of Cryptendoxyla hypophloia, an ascomycetous fungus: evidence for a new major class of Group I introns.

Abstract. The ascomycetous fungus Cryptendoxyla hypophloia contains an insertion of 433 base pairs in the genes encoding nuclear small subunit ribosomal RNA. Secondary structure analyses of the insert reveal characteristics indicative of a Group I intron, including elements P, Q, R, and S; however, the sequences of these conserved regions deviate significantly from recognized consensus sequences for Group I introns. Principal-components analysis, based on 79 nucleotide positions from the conserved core sequences of 93 Group I introns, identified 17 introns similar to that of C. hypophloia. This grouping, which includes inserts from phylogenetically diverse organisms, cannot readily be classified in any previously recognized major group of Group I introns. We propose the creation of a new group, IE, to accommodate these sequences, and discuss the evolutionary relationships between group IE and other major groups of Group I introns.

Phylogenetic analysis of ambrosial species in the genus Raffaelea based on 18S rDNA sequences.

Cladistic analysis of characters derived from nuclear-encoded 18S rDNA sequences was used to infer the phylogenetic placement of ambrosial species of the anamorph genus Raffaelea among perithecial ascomycetes. Of eight species in the genus investigated, seven resolve as a monophyletic lineage that forms a sister group to the sexual genus Ophiosioma. Raffaelea hennebertii , the single species excluded from this lineage, appears to be allied phylogenetically with species of Melanospora . These data are discussed in relation to the monophyly of Raffaelea and its relationship with other sexual and asexual fungal associates of wood-boring Coleoptera. In addition, we report the presence of significant length variation in PCR-amplified 18S rDNA fragments for three of the Raffaelea species studied.

Polyphyletic origins of yeast-like endocytobionts from anobiid and cerambycid beetles

Cladistic analysis of nucleotide characters derived from partial 18S rDNA sequences has been used to infer phylogenetic relationships among five Candida species that exist in nature strictly as intracellular gut endocytobionts of anobiid or cerambycid beetles. Concordant with their assumed taxonomic status, all five species resolve within Saccharomycetales. For both the anobiid-derived taxa, C. ernobii, C. karawaeiwii and C. xestobii, and the cerambycid-derived taxa, C. tenuis and C. rhagii, this phylogenetic position clearly discriminates Candida yeasts from the anobiid yeast-like endocytobionts in Symbiotaphrina which resolve within filamentous ascomycetes. The analyses provide no evidence for a discrete lineage of Candida endocytobionts within Saccharomycetales. Rather, each of the anobiid symbionts and the cerambycid-derived species resolve in separate clades. These data confirm the polyphyletic origins of intracellular symbioses between ascomycetes and Coleoptera and provide another example of convergent evolution in fungal-arthropod associations. The implications of the phylogenetic data for theories on the origins of endocytobiosis are discussed.

Taxonomic diversity and interactions of insect-associated ascomycetes

Many ascomycetes are associated with insects to form symbioses. The fungi are necrotrophic and biotrophic parasites, endosymbionts, insect-dispersed forms, and other obligate associates that provide nourishment for insects. Diversity among these fungi can be categorized in several different ways: taxonomic diversity, variety of interaction types occurring within a fungal lineage, and number of fungal species. Previously our inability to produce well supported phylogenetic hypotheses has obscured these views of diversity. Over the past 5 years our knowledge of insect-associated fungi has been improved by the use of DNA sequence analysis. Such studies have revealed that ascomycetes in almost all major clades are associated intimately with insects. Of particular interest has been the sorting out of relationships of taxa with convergent morphologies, unique characters, and lost characters, including those associated with sexual reproduction. Within some fungal groups the types of interactions with insects are diverse, and eventually phylogenetic analysis will help to trace the evolutionary development of symbioses. Molecular studies also contribute to our understanding of the number of species which may vary according to species concepts used in their study.