Kotaro Yanagi
Osaka University
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Publication
Featured researches published by Kotaro Yanagi.
Journal of Biological Chemistry | 2011
Kotaro Yanagi; Mizue Ashizaki; Hisashi Yagi; Kazumasa Sakurai; Young Ho Lee; Yuji Goto
Although amyloid fibrils deposit with various proteins, the comprehensive mechanism by which they form remains unclear. We studied the formation of fibrils of human islet amyloid polypeptide associated with type II diabetes in the presence of various concentrations of 1,1,1,3,3,3-hexafluoroisopropanol (HFIP) under acidic and neutral pH conditions using CD, amyloid-specific thioflavin T fluorescence, fluorescence imaging with thioflavin T, and atomic force microscopy. At low pH, the formation of fibrils was promoted by HFIP with an optimum at 5% (v/v). At neutral pH in the absence of HFIP, significant amounts of amorphous aggregates formed in addition to the fibrils. The addition of HFIP suppressed the formation of amorphous aggregates, leading to a predominance of fibrils with an optimum effect at 25% (v/v). Under both conditions, higher concentrations of HFIP dissolved the fibrils and stabilized the α-helical structure. The results indicate that fibrils and amorphous aggregates are different types of precipitates formed by exclusion from water-HFIP mixtures. The exclusion occurs through the combined effects of hydrophobic interactions and electrostatic interactions, both of which are strengthened by low concentrations of HFIP, and a subtle balance between the two types of interactions determines whether the fibrils or amorphous aggregates dominate. We suggest a general view of how the structure of precipitates varies dramatically from single crystals to amyloid fibrils and amorphous aggregates.
Journal of Biological Chemistry | 2011
Daisaku Ozawa; Kazuhiro Hasegawa; Young-Ho Lee; Kazumasa Sakurai; Kotaro Yanagi; Tadakazu Ookoshi; Yuji Goto; Hironobu Naiki
The relationship between various amyloidoses and chaperones is gathering attention. In patients with dialysis-related amyloidosis, α2-macroglobulin (α2M), an extracellular chaperone, forms a complex with β2-microglobulin (β2-m), a major component of amyloid fibrils, but the molecular mechanisms and biological implications of the complex formation remain unclear. Here, we found that α2M substoichiometrically inhibited the β2-m fibril formation at a neutral pH in the presence of SDS, a model for anionic lipids. Binding analysis showed that the binding affinity between α2M and β2-m in the presence of SDS was higher than that in the absence of SDS. Importantly, SDS dissociated tetrameric α2M into dimers with increased surface hydrophobicity. Western blot analysis revealed that both tetrameric and dimeric α2M interacted with SDS-denatured β2-m. At a physiologically relevant acidic pH and in the presence of heparin, α2M was also dissociated into dimers, and both tetrameric and dimeric α2M interacted with β2-m, resulting in the inhibition of fibril growth reaction. These results suggest that under conditions where native β2-m is denatured, tetrameric α2M is also converted to dimeric form with exposed hydrophobic surfaces to favor the hydrophobic interaction with denatured β2-m, thus dimeric α2M as well as tetrameric α2M may play an important role in controlling β2-m amyloid fibril formation.
Journal of Molecular Biology | 2012
Kotaro Yanagi; Kazumasa Sakurai; Yuichi Yoshimura; Tsuyoshi Konuma; Young-Ho Lee; Kenji Sugase; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
Seibutsu Butsuri | 2013
Kotaro Yanagi; Kazumasa Sakurai
生物物理 | 2011
Kotaro Yanagi; Mizue Ashizaki; Hisashi Yagi; Kazumasa Sakurai; Young-Ho Lee; Yuji Goto
Seibutsu Butsuri | 2011
Kotaro Yanagi; Mizue Ashizaki; Hisashi Yagi; Kazumasa Sakurai; Young-Ho Lee; Yuji Goto
Seibutsu Butsuri | 2010
Kazumasa Sakurai; Kotaro Yanagi; Yuichi Yoshimura; Tsuyoshi Konuma; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
生物物理 | 2009
Kotaro Yanagi; Kazumasa Sakurai; Young-Ho Lee; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
Seibutsu Butsuri | 2009
Kotaro Yanagi; Kazumasa Sakurai; Young-Ho Lee; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
生物物理 | 2008
Kotaro Yanagi; Kazumasa Sakurai; Eri Chatani; Hironobu Naiki; Yuji Goto