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Dive into the research topics where Kotaro Yanagi is active.

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Featured researches published by Kotaro Yanagi.


Journal of Biological Chemistry | 2011

Hexafluoroisopropanol Induces Amyloid Fibrils of Islet Amyloid Polypeptide by Enhancing Both Hydrophobic and Electrostatic Interactions

Kotaro Yanagi; Mizue Ashizaki; Hisashi Yagi; Kazumasa Sakurai; Young Ho Lee; Yuji Goto

Although amyloid fibrils deposit with various proteins, the comprehensive mechanism by which they form remains unclear. We studied the formation of fibrils of human islet amyloid polypeptide associated with type II diabetes in the presence of various concentrations of 1,1,1,3,3,3-hexafluoroisopropanol (HFIP) under acidic and neutral pH conditions using CD, amyloid-specific thioflavin T fluorescence, fluorescence imaging with thioflavin T, and atomic force microscopy. At low pH, the formation of fibrils was promoted by HFIP with an optimum at 5% (v/v). At neutral pH in the absence of HFIP, significant amounts of amorphous aggregates formed in addition to the fibrils. The addition of HFIP suppressed the formation of amorphous aggregates, leading to a predominance of fibrils with an optimum effect at 25% (v/v). Under both conditions, higher concentrations of HFIP dissolved the fibrils and stabilized the α-helical structure. The results indicate that fibrils and amorphous aggregates are different types of precipitates formed by exclusion from water-HFIP mixtures. The exclusion occurs through the combined effects of hydrophobic interactions and electrostatic interactions, both of which are strengthened by low concentrations of HFIP, and a subtle balance between the two types of interactions determines whether the fibrils or amorphous aggregates dominate. We suggest a general view of how the structure of precipitates varies dramatically from single crystals to amyloid fibrils and amorphous aggregates.


Journal of Biological Chemistry | 2011

Inhibition of β2-Microglobulin Amyloid Fibril Formation by α2-Macroglobulin

Daisaku Ozawa; Kazuhiro Hasegawa; Young-Ho Lee; Kazumasa Sakurai; Kotaro Yanagi; Tadakazu Ookoshi; Yuji Goto; Hironobu Naiki

The relationship between various amyloidoses and chaperones is gathering attention. In patients with dialysis-related amyloidosis, α2-macroglobulin (α2M), an extracellular chaperone, forms a complex with β2-microglobulin (β2-m), a major component of amyloid fibrils, but the molecular mechanisms and biological implications of the complex formation remain unclear. Here, we found that α2M substoichiometrically inhibited the β2-m fibril formation at a neutral pH in the presence of SDS, a model for anionic lipids. Binding analysis showed that the binding affinity between α2M and β2-m in the presence of SDS was higher than that in the absence of SDS. Importantly, SDS dissociated tetrameric α2M into dimers with increased surface hydrophobicity. Western blot analysis revealed that both tetrameric and dimeric α2M interacted with SDS-denatured β2-m. At a physiologically relevant acidic pH and in the presence of heparin, α2M was also dissociated into dimers, and both tetrameric and dimeric α2M interacted with β2-m, resulting in the inhibition of fibril growth reaction. These results suggest that under conditions where native β2-m is denatured, tetrameric α2M is also converted to dimeric form with exposed hydrophobic surfaces to favor the hydrophobic interaction with denatured β2-m, thus dimeric α2M as well as tetrameric α2M may play an important role in controlling β2-m amyloid fibril formation.


Journal of Molecular Biology | 2012

The monomer-seed interaction mechanism in the formation of the β2-microglobulin amyloid fibril clarified by solution NMR techniques.

Kotaro Yanagi; Kazumasa Sakurai; Yuichi Yoshimura; Tsuyoshi Konuma; Young-Ho Lee; Kenji Sugase; Takahisa Ikegami; Hironobu Naiki; Yuji Goto


Seibutsu Butsuri | 2013

The Monomer-Seed Interaction Mechanism in the Formation of the ^|^beta;2-Microglobulin Amyloid Fibril Clarified by Solution NMR Techniques

Kotaro Yanagi; Kazumasa Sakurai


生物物理 | 2011

1D1648 ヘキサフルオロイソプロパノールによるIAPPのアミロイド線維形成(蛋白質_物性1,第49回日本生物物理学会年会)

Kotaro Yanagi; Mizue Ashizaki; Hisashi Yagi; Kazumasa Sakurai; Young-Ho Lee; Yuji Goto


Seibutsu Butsuri | 2011

1D1648 Hexafluoroisopropanol induces amyloid fibrils of islet amyloid polypeptide by enhancing both hydrophobic and electrostatic interactions(Protein: Property 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Kotaro Yanagi; Mizue Ashizaki; Hisashi Yagi; Kazumasa Sakurai; Young-Ho Lee; Yuji Goto


Seibutsu Butsuri | 2010

1P063 1YA0930 Identification of transient intermediates of the formation of the β2-microglobulin amyloid fibril by heteronuclear NMR techniques.(Protein:Property,Early Research in Biophysics Award Candidate Presentations,Early Research in Biophysics Award,The 48th Annual Meeting of the Biophysical Society of Japan)

Kazumasa Sakurai; Kotaro Yanagi; Yuichi Yoshimura; Tsuyoshi Konuma; Takahisa Ikegami; Hironobu Naiki; Yuji Goto


生物物理 | 2009

2P-048 重水素交換法を用いたアミロイド線維伸長機構の解析(蛋白質-物性(安定性,折れたたみなど),第47回日本生物物理学会年会)

Kotaro Yanagi; Kazumasa Sakurai; Young-Ho Lee; Takahisa Ikegami; Hironobu Naiki; Yuji Goto


Seibutsu Butsuri | 2009

2P-048 Analysis of the mechanism of the amyloid fiber extension using H/D exchange(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Kotaro Yanagi; Kazumasa Sakurai; Young-Ho Lee; Takahisa Ikegami; Hironobu Naiki; Yuji Goto


生物物理 | 2008

3P-010 重水素交換法を用いたアミロイド線維伸長反応機構の解析(蛋白質・物性(3),第46回日本生物物理学会年会)

Kotaro Yanagi; Kazumasa Sakurai; Eri Chatani; Hironobu Naiki; Yuji Goto

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Tsuyoshi Konuma

Icahn School of Medicine at Mount Sinai

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