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Dive into the research topics where Kubilay Çinar is active.

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Featured researches published by Kubilay Çinar.


Journal of Viral Hepatitis | 2003

YSDD: a novel mutation in HBV DNA polymerase confers clinical resistance to lamivudine.

A.M. Bozdayi; Ozden Uzunalimoglu; Ahmet R Turkyilmaz; N. Aslan; Sezgin O; Sahin T; Bozdayi G; Kubilay Çinar; Pai Sb; Pai R; Hakan Bozkaya; Selim Karayalcin; Cihan Yurdaydin; Raymond F. Schinazi

Summary.  The emergence of drug‐resistant virus in hepatitis B virus (HBV) patients treated with lamivudine is well documented. In this study, we determined the mutations occurring in the tyrosine–methionine–aspartate–aspartate (YMDD) amino acid motif of the HBV DNA polymerase gene, as well as upstream and downstream of this region, in patients with breakthrough virus during lamivudine therapy. Thirty‐one Turkish patients (20 patients HBeAg positive, 11 patients HBeAg negative and anti‐HBe positive) with chronic HBV infection who completed at least 104 weeks of lamivudine treatment were investigated. All patients received lamivudine, (150 mg/day), for 104 weeks, with or without 4 months of interferon (IFN) combination. HBV‐specific sequences were amplified by polymerase chain reaction (PCR) from sera of patients with breakthrough virus, and the PCR products were directly analysed by sequencing. Breakthrough virus was detected in seven of the 31 patients (22.6%) between 9 and 18 months of therapy. Of the seven patients, six were HBeAg positive at baseline, and four had a double mutation consisting of rtM204V and rtL180M, while two had an rtM204I change. In one patient, two base substitutions at rt204 (ATG → AGT; T to G and G to T) lead to a methionine to serine change (YMDD → YSDD). This novel DNA pol mutation was detected at month 18 of lamivudine treatment. In addition, this new variant had the rtL180M mutation and a 12 base pair deletion in the pre‐S1 region between nucleotides 43–54. The YSDD mutation was still present 6 months after lamivudine discontinuation.In vitro transfection studies also confirmed that the YSDD strain is resistant to lamivudine. In conclusion, the results indicate that, in addition to a Met → Val and Met → Ile change in YMDD, a Met → Ser change at rt204 (YMDD → YSDD) associated with the rtL180M change can also emerge during lamivudine treatment, which confers lamivudine resistance in vivo and in vitro, leading to virological breakthrough and ALT increases.


Cytopathology | 2006

The diagnostic value of on‐site cytopathological evaluation and cell block preparation in fine‐needle aspiration cytology of liver masses

Koray Ceyhan; S. A. Kupana; Mehmet Bektas; Sahin Coban; Ali Tüzün; Kubilay Çinar; Irfan Soykan; Necati Örmeci; N. Erdogan; S. Erekul; K. Kose

Objective:  The aims of this study were to evaluate the typing accuracy of conventional smear (CS), cell block (CB) preparations and combined use of both procedures (CS + CB) for the diagnosis of hepatic malignancies and to determine whether immediate on‐site cytopathological evaluation improves the diagnostic yield of liver fine‐needle aspiration cytology (FNAC).


Journal of Clinical Gastroenterology | 2008

Adjuvant therapeutic plasma exchange in liver failure: assessments of clinical and laboratory parameters.

Mehmet Bektas; Ramazan Idilman; Irfan Soykan; Ender Soydan; Mutlu Arat; Kubilay Çinar; Sahin Coban; Ali Tüzün; Hakan Bozkaya; Necati Örmeci; Ali Özden

Background Therapeutic plasma exchange (TPE) seems to be an effective approach for clearing toxins, immune-mediated antigens, and other particles from the circulation. The aim of this study was to analyze the positive effects of TPE on clinical and biochemical parameters of liver failure. Patients and Methods Between January 2001 and March 31, 2005 individuals (men/women, 17/14; median age, 42.7±15.8 y) with acute and chronic liver failure who underwent a total of 113 TPEs (median session 3.7) were retrospectively reviewed. TPE was performed using the Fresenius AS-TEC 204 cell separator (Fresenius AG, Germany). The indication for TPE was severe coagulopathy (prothrombin time >20 s), severe hepatic encephalopathy, hyperbilirubinemia, and candidacy for liver transplantation. All patients were examined before and immediately after the last TPE session. Results When compared with baseline, there was significant improvement in hepatic encephalopathy stage (from median score 3.0 to 1.0, P=0.001), serum prothrombin time (from median 26.0 to 20.0 s, P=0.003), aminotransferases (P<0.001), and total bilirubin levels (from median 35.0 to 23.3 mg/dL, P<0.001) after TPE. Thirteen of the thirty-one individuals (41.9%) died in the hospital. The mean follow-up period of 18 survival patients was 35.9±5.6 months and 10 of those survived (55.6%, 10/18). No serious adverse effect of TPE was observed in any of the patients during or after completion of TPE. Only 6 patients experienced minor transfusion reactions. Conclusions TPE seems to be effective in improving hepatic encephalopathy stage and liver tests in individuals with acute and chronic liver failure. The data suggest that TPE is safe and tolerable in such individuals, however, overall survival remains poor despite TPE.


Hepatology | 2005

Fatigue of cholestasis and the serotoninergic neurotransmitter system in the rat

Turgay Çelik; M. Zafer Gören; Kubilay Çinar; Hakan Gurdal; F. Oğuz Önder; Akif Tan; Berna Terzioglu; A. Mithat Bozdayi; Hakan Bozkaya; Ozden Uzunalimoglu; Cihan Yurdaydin

Fatigue associated with cholestasis may impair health‐related quality of life. The pathogenesis of this symptom is largely unknown, but it has been suggested that central serotoninergic neurotransmission may be implicated and that serotonin 1A receptor agonists may yield improvement. The aim of this study was to study the central serotoninergic system, specifically the serotonin (5‐HT)1A receptor–mediated pathway of serotoninergic neurotransmission, in a bile duct resection rat model of cholestasis. Fatigue was assessed in the forced swim test in sham and bile duct–resected rats. The serotonin behavioral syndrome, which includes hyperlocomotion, was assessed in both groups of rats after escalating doses of the 5‐HT1A receptor agonist 8‐hydroxy(di‐n‐propylamine)tetralin (8‐OH DPAT). 5‐HT1A and 5‐HT2 receptor densities were explored in four brain regions using a receptor‐binding assay. Extracellular 5‐HT and 5‐hydroxyindoleacetic acid were measured via in vivo brain dialysis. Bile duct–resected rats spent more time floating in the forced swim test, and 8‐OH DPAT decreased floating time in cholestatic rats (P < .01). Dose–response curves created with 8‐OH DPAT for the serotonin behavioral syndrome were similar in bile duct–resected and sham‐operated rats. 5‐HT1A and 5‐HT2 receptor densities in most brain regions and extracellular serotonin levels were similar in both groups of rats. In conclusion, 5‐HT1A receptor agonist–induced amelioration of fatigue in cholestatic rats may be nonspecific and not linked to reversal of the pathophysiology of fatigue associated with cholestasis; however, these data do not exclude a potential role of the central serotoninergic system in the evolution of fatigue. (HEPATOLOGY 2005.)


Journal of Clinical Gastroenterology | 2003

Nuclear localization of hepatitis B core antigen and its relations to liver injury, hepatocyte proliferation, and viral load

Ebru Serinoz; Murat Varli; Esra Erden; Kubilay Çinar; Aydan Kansu; Ozden Uzunalimoglu; Cihan Yurdaydin; Hakan Bozkaya

Goals The aim of this study was to determine the factor(s) independently affecting the HBcAg expression pattern in HBV-infected livers. Background Subcellular localization of HBcAg have been found to be related to the activity of liver disease, hepatocyte proliferation rate and the level of HBV replication. Study A total of 98 patients with biopsy proven chronic hepatitis B were included. HBcAg and proliferative cell nuclear antigen (PCNA) were immunohistochemically detected. HBcAg expression and its relationship with histologic activity index, ALT levels, PCNA score and HBV DNA levels were investigated. Results Forty-three (44%) patients were positive for HBcAg staining, with most of them (37 patients) having nuclear localization. Forty-seven percent of patients with detectable HBV DNA had nuclear staining while none of the HBV DNA negative patients had nuclear staining (P < 0.0005). Patients with positive nuclear staining had lower HAI (<8) and a lower PCNA score (<353/1,000 cell) than those with negative staining (62% vs. 39% and 90% vs. 66%, respectively, P < 0.05). In multivariate analysis, both high HBV DNA level and low HAI (P < 0.0005 and P < 0.05, respectively) but not PCNA score, were independently associated with nuclear staining of HBcAg. Conclusions Our results suggest that viral load and the severity of liver damage but not the rate of hepatocyte proliferation independently affects the HBcAg expression pattern.


Journal of Viral Hepatitis | 2009

A short course of add-on adefovir dipivoxil treatment in lamivudine-resistant chronic hepatitis B patients

Ramazan Idilman; S. Kaymakoglu; F. Oğuz Önder; E. Ahishali; Mehmet Bektas; Kubilay Çinar; B. Pınarbasi; Selim Karayalcin; S. Badur; Yilmaz Cakaloglu; A. Mithat Bozdayi; Hakan Bozkaya; A. Ökten; Cihan Yurdaydin

Summary.  The aims of the study were to investigate the efficacy of rescue therapy with lamivudine (LAM) and adefovir (ADV) combination for 6 months followed by ADV monotherapy in lamivudine‐resistant chronic hepatitis B (LAM‐R CHB) patients, and to analyze the frequency of ADV resistance mutant development in such patients. A total of 170 consecutive LAM‐R CHB patients (male/female: 130/40, mean age: 42.9 ± 13.4 years) with viral breakthrough under LAM therapy were analyzed. A total of 68 had HBeAg‐positive. Patients received rescue therapy with LAM [100 mg (qd)]+ADV [10 mg (qd)] for 6 months after which LAM was discontinued. HBV‐DNA was assessed with the HBV‐DNA 3.0 bDNA assay. ADV‐resistant mutations were identified by sequencing the reverse transcriptase region. The median duration of rescue therapy was 24 months. Cumulative probability of becoming HBV‐DNA undetectable was 33.8%, 59.6% and 68.2% after 24, 48 and 96 weeks of treatment, respectively. These figures were 43.2%, 58.0% and 73.1% for ALT normalization. Among 68 HBeAg‐positive CHB patients, 10 patients had an e‐antigen seroconversion. Low baseline HBV‐DNA level (<107 copies/mL) was a significant predictor of response to ADV treatment (P < 0.01). Cumulative probability of ADV resistance was 1.2%, 15.1% and 37.3% at 12, 24 and 36 months of therapy, respectively. By multivariate analysis, baseline high viral load and primary nonresponse to treatment at week 24 predicted ADV resistance. The data indicate that a time limited add‐on strategy does not provide benefit over the switch strategy with respect emergence of ADV resistant mutants in LAM‐R CHB patients.


Infection | 2000

Circulating IL-2 and IL-10 in chronic active hepatitis C with respect to the response to IFN treatment.

Hakan Bozkaya; A.M. Bozdayi; N. Aslan; C. Türkay; Mustafa Sarioglu; Hülya Çetinkaya; Meral Akdogan; Kubilay Çinar; Esra Erden; K. Köse; H. Sentürk; Hikmet Akkiz; Selim Karayalcin; Cihan Yurdaydin; Ozden Uzunalimoglu

SummaryBackground: The importance of circulating immunoregulatory cytokines in response to IFN treatment and the change of in vivo production of these cytokines during interferion (IFN) treatment are not well known. We aimed to determine whether pretreatment serum levels of IL-2 and IL-10 are predictive of the response to IFN treatment and to investigate if treatment response or nonresponse has any effect on the circulating levels of these cytokines. Patients and Methods: 37 patients (18 responders and 19 non-responders) with chronic hepatitis C virus (HCV) infection who received IFN-α2b for 6 months were studied. Responders were defined by complete alanine aminotransferase (ALT) normalization and loss of HCV RNA as detected by bDNA assay while patients who had elevated ALT levels and positive HCV RNA after 6 months were considered as nonresponders. Results: Genotype distribution, ALT and HCG RNA levels were similar in responders and nonresponders. A significant number of patients with chronic hepatitis C (20/37 = 54%) had elevated IL-2 levels while IL-10 levels were not different from controls. No difference in baseline cytokine levels was observed between responders and non-responders. In the posttreatment serum samples some patients lost their detectable IL-2 or IL-10; some patients developed detectable cytokine levels after treatment irrespective of the treatment response. Conclusion: These results suggest that active liver injury in chronic hepatitis C is associated with increased circulating Th1 cytokine IL-2 but not with Th2 cytokine IL-10 and that circulating levels of these cytokines do not predict the response to IFN treatment. There is no constant and regular change in circulating levels of these cytokines under IFN treatment with respect to treatment response.


Journal of Viral Hepatitis | 2012

Hepatitis B surface antigen seroconversion is associated with favourable long-term clinical outcomes during lamivudine treatment in HBeAg-negative chronic hepatitis B patients.

Ramazan Idilman; Kubilay Çinar; Gülseren Seven; Y. Bozkus; Atilla Halil Elhan; Mithat Bozdayi; Cihan Yurdaydin; Kadir Bahar

Summary.  The aims of this study were to assess hepatitis B surface antigen (HBsAg) seroconversion and to determine its impact on the natural course of the disease in patients with HBeAg‐negative chronic hepatitis B (CHB) during lamivudine (LMV) treatment. A total of 183 consecutive patients with HBeAg‐negative CHB who were treated with LMV were included in the study. Data were retrospectively collected from outpatient visit charts. The primary endpoint was HBsAg seroconversion to anti‐HBs. The secondary endpoint was to determine the development of cirrhosis. Loss of HBsAg was confirmed in 10 patients and seroconversion to anti‐HBs in nine patients during LMV treatment or after its discontinuation. HBsAg seroconversion was achieved on‐treatment in four patients after a median treatment duration of 30 months and off‐treatment in the remaining five patients in a median 61 months after LMV discontinuation. The cumulative probability of HBsAg seroconversion increased from 0.6% at 1 year and 1.9% at 5 years to 21.5% at 10 years of LMV during and after LMV treatment. HBsAg clearance was preceded by undetectable serum hepatitis B virus (HBV) DNA. The majority of the patients responding to treatment had undetectable HBV DNA levels at 24 weeks of treatment. The cumulative probability of LMV resistance increased from 2.2% at 1 year to 37.3% at 5 years. No baseline parameter predicting either HBsAg seroconversion or the emergence of LMV resistance was identified. None of the patients with HBsAg seroconversion experienced virological breakthrough or disease progression during the follow‐up period. These results indicate that HBsAg seroclearance can occur in patients with HBeAg‐negative CHB under LMV therapy and predicts better clinical outcome.


Digestive Diseases and Sciences | 2010

Endoscopic management of biliary parasitic diseases.

Mehmet Bektas; Abdülkadir Dökmeci; Kubilay Çinar; Imge Halici; Erkin Oztas; Selim Karayalcin; Ramazan Idilman; Mustafa Sarioglu; Yusuf Üstün; Yasar Nazligul; Necati Örmeci; Hasan Ozkan; Hakan Bozkaya; Cihan Yurdaydin

Aim/Materials and Methods Between January 2000 and June 2007, 3,548 endoscopic retrograde cholangiopancreatography (ERCP) were performed for extrahepatic cholestasis, cholangitis, and choledocholithiasis. The results of ERCPs were evaluated retrospectively and examined carefully to investigate the management and endoscopic therapy of biliary parasites. Results Of the 3,548 patients who underwent ERCP, 24 (0.66%) were found to have biliary parasitosis. The mean age of the biliary parasitosis patients (16 women) was 48.6 (15–77) years. Of these 24 cases, 16 patients had hydatid cystic disease (eight with partial obstruction of the biliary tract, and eight with ruptured cysts), four patients had Fasciola hepatica, and four patients had Ascaris lumbricoides infestation. Endoscopic sphincterotomy was performed, after which the choledochus was examined carefully by balloon catheter and basket procedure. Conclusion The ERCP procedure is very useful in the therapy of biliary parasitic infestations.


Journal of Gastroenterology and Hepatology | 2006

Long‐term prognosis of nonalcoholic fatty liver disease: Is pharmacological therapy actually necessary?

Kubilay Çinar; Sahin Coban; Ramazan Idilman; Ali Tüzün; Mustafa Sarioglu; Mehmet Bektas; Esra Erden; Hakan Bozkaya; Ali Özden

Background and Aim:  Nonalcoholic fatty liver disease (NAFLD) comprises a wide spectrum of liver injury, ranging from steatosis and steatohepatitis to cirrhosis. Reasons for the different natural course in individuals with NAFLD are still unclear. The aim of this study was to describe the natural course of disease in individuals with NAFLD who did not receive pharmacological therapy.

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