Kun-Lin Yang

Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium

Tetrachloroethene (PCE) and trichloroethene (TCE) are ideal solvents for numerous applications, and their widespread use makes them prominent groundwater pollutants. Even more troubling, natural biotic and abiotic processes acting on these solvents lead to the accumulation of toxic intermediates (such as dichloroethenes) and carcinogenic intermediates (such as vinyl chloride). Vinyl chloride was found in at least 496 of the 1,430 National Priorities List sites identified by the US Environmental Protection Agency, and its precursors PCE and TCE are present in at least 771 and 852 of these sites, respectively. Here we describe an unusual, strictly anaerobic bacterium that destroys dichloroethenes and vinyl chloride as part of its energy metabolism, generating environmentally benign products (biomass, ethene and inorganic chloride). This organism might be useful for cleaning contaminated subsurface environments and restoring drinking-water reservoirs.

Electrosorption capacitance of nanostructured carbon aerogel obtained by cyclic voltammetry

Abstract Cyclic voltammetry experiments at various electrolyte solution concentrations (0.001–0.1 M) and scan rates (1 to 5 mV s −1 ) have been performed to study the electrical double layer (edl) formation in nanostructured carbon aerogel. The results show that carbon aerogel is a good edl capacitor and can be further divided into mesoporous and microporous capacitors. According to the experiments, the mesoporous capacitor shows a fast charging/discharging response and is only minimally affected by the electrolyte concentration and scan rate. Therefore, the specific capacitance of the mesoporous capacitor is found to be constant over a wide range of applied electrical potentials. On the other hand, the microporous capacitor shows a slow charging/discharging response and its capacitance strongly depends on the electrolyte concentration and potential. Unlike previous experiments, in which only a flat minimum was observed at the point of zero charge (pzc), in the current study, a deep minimum is observed near the pzc at low electrolyte concentration if a slow scan rate is used. This unique feature is a result of edl overlapping in the micropores and is consistent with the predictions by the Gouy–Chapman model employed in this study. Based on this behavior, a new approach is suggested for pzc measurements of solid porous materials for which a large portion of the surface area is in the micropore region.

Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls

Significance Polychlorinated biphenyls (PCBs) as persistent organic pollutants are widespread in the sediments of lakes, rivers, and harbors. Although the PCB detoxification through microbial reductive dechlorination has been extensively studied for more than 20 y, the difficulty in cultivating PCB dechlorinators in pure culture impedes further characterization, optimization, and application in in situ bioremediation. By combining traditional culture techniques with next-generation sequencing technology, this study reports the successful cultivation and characterization of three PCB-respiring Dehalococcoides mccartyi strains in pure culture and identification of their key functional genes, which advances the PCB bioremediation and our understanding of organohalide respiration of PCBs. Fastidious anaerobic bacteria play critical roles in environmental bioremediation of halogenated compounds. However, their characterization and application have been largely impeded by difficulties in growing them in pure culture. Thus far, no pure culture has been reported to respire on the notorious polychlorinated biphenyls (PCBs), and functional genes responsible for PCB detoxification remain unknown due to the extremely slow growth of PCB-respiring bacteria. Here we report the successful isolation and characterization of three Dehalococcoides mccartyi strains that respire on commercial PCBs. Using high-throughput metagenomic analysis, combined with traditional culture techniques, tetrachloroethene (PCE) was identified as a feasible alternative to PCBs to isolate PCB-respiring Dehalococcoides from PCB-enriched cultures. With PCE as an alternative electron acceptor, the PCB-respiring Dehalococcoides were boosted to a higher cell density (1.2 × 108 to 1.3 × 108 cells per mL on PCE vs. 5.9 × 106 to 10.4 × 106 cells per mL on PCBs) with a shorter culturing time (30 d on PCE vs. 150 d on PCBs). The transcriptomic profiles illustrated that the distinct PCB dechlorination profile of each strain was predominantly mediated by a single, novel reductive dehalogenase (RDase) catalyzing chlorine removal from both PCBs and PCE. The transcription levels of PCB-RDase genes are 5–60 times higher than the genome-wide average. The cultivation of PCB-respiring Dehalococcoides in pure culture and the identification of PCB-RDase genes deepen our understanding of organohalide respiration of PCBs and shed light on in situ PCB bioremediation.

Liquid crystal droplets as a hosting and sensing platform for developing immunoassays.

In this paper, we report an immunoassay in which probe proteins are immobilized on the surface of liquid crystal (LC) droplets rather than on solid surfaces. The advantage of this immunoassay is that the binding of antibodies to the probe proteins can be transduced by the LC droplets directly without the need for additional steps. For example, when we incubate the LC droplets decorated with immunoglobulin G (IgG) in a solution containing anti-IgG (AIgG), these droplets change their orientations from radial to bipolar configuration. In contrast, when we incubate the IgG-LC droplets in a solution containing anti-human serum albumin (AHSA), no changes are observed. The change of orientational configuration indicates the formation of the antigen-antibody immunocomplex on the surface of the LC droplets. Using LC droplet immunoassays, we successfully detect antibody concentrations as low as 0.01 μg/mL for AIgG and 0.02 μg/mL for AHSA. Because the immunoassay using LC droplets is label-free and gives a unique optical response, it has the potential to be further developed as a portable and low-cost immunoassay.

A liquid crystal-based sensor for real-time and label-free identification of phospholipase-like toxins and their inhibitors.

We report a liquid crystal (LC)-based sensor for real-time and label-free identification of phospholipase-like toxins. Beta-bungarotoxin exhibits Ca(2+)-dependent phospholipase A(2) activity whereas alpha-bungarotoxin and myotoxin II do not exhibit any phospholipase activity. The sensor can selectively identify beta-bungarotoxin, when it hydrolyzes a phospholipid monolayer self-assembled at aqueous-LC interface, through orientational responses of LCs. As a result, optical signals that reflect the spatial and temporal distribution of phospholipids during the hydrolysis can therefore be generated in a real-time manner. The sensor is very sensitive and requires less than 5pg of beta-bungarotoxin for the detection. When phospholipase A(2) inhibitors are introduced together with beta-bungarotoxin, no orientational response of LCs can be observed. In addition, the regeneration of the sensor can be done without affecting the sensing performance. This work demonstrates a simple and cost-effective LC-based sensor for identifying phospholipase-like toxins and for screening compound libraries to find potential toxin inhibitors.

Imaging the disruption of phospholipid monolayer by protein-coated nanoparticles using ordering transitions of liquid crystals.

We report an easily visualized liquid crystal (LC)-based system to study the molecular interactions between protein-coated gold nanoparticles (AuNPs) and supported phospholipid monolayer self-assembled at the aqueous-LC interface. Protein-coated AuNPs were found to disrupt the phospholipid monolayer and resulted in the orientational transitions of LCs that support the phospholipid layer. The disruption of the phospholipid monolayer depends on the type of protein (albumin, neutravidin, and fibrinogen) adsorbing onto nanoparticles. Furthermore, our results suggest that hydrophobic interaction plays a major role in the disruption of the phospholipid layer by protein-coated AuNPs. Results obtained from this study may offer new understanding in the potential cytotoxicity of nanomaterials, where the interaction between nanoparticles and cell membrane is an important step.

Graphene/liquid crystal based terahertz phase shifters

Due to its high electrical conductivity and excellent transmittance at terahertz frequencies, graphene is a promising candidate as transparent electrodes for terahertz devices. We demonstrate a liquid crystal based terahertz phase shifter with the graphene films as transparent electrodes. The maximum phase shift is 10.8 degree and the saturation voltage is 5 V with a 50 µm liquid crystal cell. The transmittance at terahertz frequencies and electrical conductivity depending on the number of graphene layer are also investigated. The proposed phase shifter provides a continuous tunability, fully electrical controllability, and low DC voltage operation.

Monte Carlo simulations of electrical double-layer formation in nanopores

The formation of the electrical double layer (EDL) in an aqueous solution in contact with the charged solid surfaces of a slit-type nanopore has been simulated by grand canonical Monte Carlo (GCMC) and canonical Monte Carlo (CMC) methods. In the GCMC simulations, a primitive EDL model in which water is considered as a continuum and the ions are considered as hard spheres is used. The results are found to be slightly different from those predicted by the Gouy–Chapman model at low electrolyte concentration and low surface charge density. The GCMC results were then used as an initial condition for the CMC simulations of a nonprimitive model in which the EDL is composed of molecular water (four-point transferable intermolecular potential, together with fluctuating charge model), cations (Na+), and anions (Cl−). The nonprimitive model provides a very different view of the EDL at the atomic level. For example, a single layer of water molecules, instead of counterions, is strongly adsorbed on negatively charged ...

Complete Debromination of Tetra- and Penta-Brominated Diphenyl Ethers by a Coculture Consisting of Dehalococcoides and Desulfovibrio Species

Polybrominated diphenyl ethers (PBDEs) are widespread global contaminants due to their extensive usage as flame retardants. Among the 209 PBDE congeners, tetra-brominated diphenyl ether (tetra-BDE) (congener 47) and penta-BDEs (congeners 99 and 100) are the most abundant, toxic, and bioaccumulative congeners in the environment. However, little is known about microorganisms that carry out debromination of these congeners under anaerobic conditions. In this study, we describe a coculture GY2 consisting of Dehalococcoides and Desulfovibrio spp., which is capable of debrominating ∼1180 nM of congeners 47, 99, and 100 (88-100% removal) to the nonbrominated diphenyl ether at an average rate of 36.9, 19.8, and 21.9 nM day(-1), respectively. Ortho bromines are preferentially removed during the debromination process. The growth of Dehalococcoides links tightly with PBDE debromination, with an estimated growth yield of 1.99 × 10(14) cells per mole of bromide released, while the growth of Desulfovibrio could be independent of PBDEs. The growth-coupled debromination suggests that Dehalococcoides cells in the coculture GY2 are able to respire on PBDEs. Given the ubiquity and recalcitrance of the tetra- and penta-BDEs, complete debromination of these congeners to less toxic end products (e.g. diphenyl ether) is important for the restoration of PBDE-contaminated environments.

Detecting proteins in microfluidic channels decorated with liquid crystal sensing dots.

In this paper, we report the integration of liquid crystal (LC) dots on microfluidic channels as microscopic protein sensors. Flexibility of patterning LC dots on a surface to fit small microfluidic channels is achieved by using inkjet printing technology. These LC dots (1 pL) remain stable when they are subjected to flowing buffer solution at a high flow velocity (v ≥ 0.198 cm/s). When the buffer solution contains protein, such as bovine serum albumin (BSA), it causes a change in the orientational ordering of the LC dots as indicated by a distinct dark-to-bright transition in the optical appearance of the LC dots. Moreover, we are able estimate the concentration of BSA by simply counting the number of bright LC dot sections. This microscopic protein sensor has potential applications in the real-time detection and quantification of proteins in aqueous solutions. This detection method is advantageous because protein labeling and complex instrumentation are not required.