Lars G. M. Pettersson

The inhomogeneous structure of water at ambient conditions

Small-angle X-ray scattering (SAXS) is used to demonstrate the presence of density fluctuations in ambient water on a physical length-scale of ≈1 nm; this is retained with decreasing temperature while the magnitude is enhanced. In contrast, the magnitude of fluctuations in a normal liquid, such as CCl4, exhibits no enhancement with decreasing temperature, as is also the case for water from molecular dynamics simulations under ambient conditions. Based on X-ray emission spectroscopy and X-ray Raman scattering data we propose that the density difference contrast in SAXS is due to fluctuations between tetrahedral-like and hydrogen-bond distorted structures related to, respectively, low and high density water. We combine our experimental observations to propose a model of water as a temperature-dependent, fluctuating equilibrium between the two types of local structures driven by incommensurate requirements for minimizing enthalpy (strong near-tetrahedral hydrogen-bonds) and maximizing entropy (nondirectional H-bonds and disorder). The present results provide experimental evidence that the extreme differences anticipated in the hydrogen-bonding environment in the deeply supercooled regime surprisingly remain in bulk water even at conditions ranging from ambient up to close to the boiling point.

Connecting dopant bond type with electronic structure in n-doped graphene

Robust methods to tune the unique electronic properties of graphene by chemical modification are in great demand due to the potential of the two dimensional material to impact a range of device applications. Here we show that carbon and nitrogen core-level resonant X-ray spectroscopy is a sensitive probe of chemical bonding and electronic structure of chemical dopants introduced in single-sheet graphene films. In conjunction with density functional theory based calculations, we are able to obtain a detailed picture of bond types and electronic structure in graphene doped with nitrogen at the sub-percent level. We show that different N-bond types, including graphitic, pyridinic, and nitrilic, can exist in a single, dilutely N-doped graphene sheet. We show that these various bond types have profoundly different effects on the carrier concentration, indicating that control over the dopant bond type is a crucial requirement in advancing graphene electronics.

Spectroscopic probing of local hydrogen-bonding structures in liquid water

We have studied the electronic structure of liquid water using x-ray absorption spectroscopy at the oxygen K edge. Since the x-ray absorption process takes less than a femtosecond, it allows probing of the molecular orbital structure of frozen, local geometries of water molecules at a timescale that has not previously been accessible. Our results indicate that the electronic structure of liquid water is significantly different from that of the solid and gaseous forms, resulting in a pronounced pre-edge feature below the main absorption edge in the spectrum. Theoretical calculations of these spectra suggest that this feature originates from specific configurations of water, for which the H-bond is broken on the H-donating site of the water molecule. This study provides a fingerprint for identifying broken donating H-bonds in the liquid and shows that an unsaturated H-bonding environment exists for a dominating fraction of the water molecules.

Ultrafast X-ray probing of water structure below the homogeneous ice nucleation temperature

Water has a number of anomalous physical properties, and some of these become drastically enhanced on supercooling below the freezing point. Particular interest has focused on thermodynamic response functions that can be described using a normal component and an anomalous component that seems to diverge at about 228 kelvin (refs 1,2,3 ). This has prompted debate about conflicting theories that aim to explain many of the anomalous thermodynamic properties of water. One popular theory attributes the divergence to a phase transition between two forms of liquid water occurring in the ‘no man’s land’ that lies below the homogeneous ice nucleation temperature (TH) at approximately 232 kelvin and above about 160 kelvin, and where rapid ice crystallization has prevented any measurements of the bulk liquid phase. In fact, the reliable determination of the structure of liquid water typically requires temperatures above about 250 kelvin. Water crystallization has been inhibited by using nanoconfinement, nanodroplets and association with biomolecules to give liquid samples at temperatures below TH, but such measurements rely on nanoscopic volumes of water where the interaction with the confining surfaces makes the relevance to bulk water unclear. Here we demonstrate that femtosecond X-ray laser pulses can be used to probe the structure of liquid water in micrometre-sized droplets that have been evaporatively cooled below TH. We find experimental evidence for the existence of metastable bulk liquid water down to temperatures of  kelvin in the previously largely unexplored no man’s land. We observe a continuous and accelerating increase in structural ordering on supercooling to approximately 229 kelvin, where the number of droplets containing ice crystals increases rapidly. But a few droplets remain liquid for about a millisecond even at this temperature. The hope now is that these observations and our detailed structural data will help identify those theories that best describe and explain the behaviour of water.

Benchmark oxygen-oxygen pair-distribution function of ambient water from x-ray diffraction measurements with a wide Q-range

Four recent x-ray diffraction measurements of ambient liquid water are reviewed here. Each of these measurements represents a significant development of the x-ray diffraction technique applied to the study of liquid water. Sources of uncertainty from statistical noise, Q-range, Compton scattering, and self-scattering are discussed. The oxygen-hydrogen contribution to the measured x-ray scattering pattern was subtracted using literature data to yield an experimental determination, with error bars, of the oxygen-oxygen pair-distribution function, g(OO)(r), which essentially describes the distribution of molecular centers. The extended Q-range and low statistical noise of these measurements has significantly reduced truncation effects and related errors in the g(OO)(r) functions obtained. From these measurements and error analysis, the position and height of the nearest neighbor maximum in g(OO)(r) were found to be 2.80(1) Å and 2.57(5) respectively. Numerical data for the coherent differential x-ray scattering cross-section I(X)(Q), the oxygen-oxygen structure factor S(OO)(Q), and the derived g(OO)(r) are provided as benchmarks for calibrating force-fields for water.

Detailed study of pyridine at the C 1s and N 1s ionization thresholds: The influence of the vibrational fine structure

High resolution, vibrationally resolved, near-edge x-ray absorption fine structure (NEXAFS) spectra at the C 1s and N 1s ionization thresholds of pyridine and deuterated d5-pyridine in the gas phase have been recorded. The high resolution of 65 meV (150 meV) at the C s (N 1s) ionization thresholds reveals vibrational structures in the spectra. Detailed ab initio and density functional theory (DFT) calculations were performed to interpret the experimental spectra and to assign the observed peaks. In particular we focused on the previously unexplained intensity ratio for the two components of the C 1s→1π* transition. For this transition the vibrational structure is included through a linear coupling model in the DFT calculations and leads to the experimentally observed ∼2:3 intensity ratio between the two π* components in the C 1s spectrum rather than the ∼3:2 ratio obtained without vibrational effects. After inclusion of relaxation effects in the excited states, in addition to the vibrational effects, both...

The adsorption structure of glycine adsorbed on Cu(110); comparison with formate and acetate/Cu(110)

The molecular orientation of an ordered monolayer of glycine adsorbed on Cu(110) has been studied using X-ray Photoelectron Spectroscopy (XPS), Near Edge X-ray Absorption Fine Structure (NEXAFS), X-ray Photoelectron Diffraction (XPD), Low-Energy Electron Diffraction (LEED) and theoretical calculations. In particular, the NEXAFS results are discussed in terms of the spectra of the related molecules ammonia (NH3), formate (HCOO), and acetate (CH3COO) on Cu(110). Whereas the latter two molecules chemisorb in similar geometries, glycine is found to assume a very different chemisorption geometry. Formate and acetate bond through two equivalent oxygen atoms with the molecular plane oriented nearly perpendicular to the surface, aligned along the [110]-azimuth. In the case of adsorbed glycine (NH2CH2COO), the azimuthal orientation is still present, i.e. the bonding oxygen atoms are aligned along the [110]-azimuth, but the molecule is found to bend towards the surface. A second chemisorption bond is formed at the nitrogen end of the molecule, involving copper atoms in the neighboring [110]-row. We therefore have the interesting case of a chemisorption bond involving different functional groups in the same molecule.

Direct, atomic orbital, static exchange calculations of photoabsorption spectra of large molecules and clusters

We outline a method for static exchange calculations of the photoabsorption spectra of large molecules and clusters, with particular attention to near-edge X-ray absorption fine structures. The static exchange matrices are determined directly from one- and two-electron integrals computed in the atomic orbital basis. Expensive storing and retrieving of integrals is thereby avoided and applications on large species possible. As a demonstration we calculate the discrete and continuum near-edge X-ray absorption spectra for molecules in the n-alkylnitrile sequence CH3(CH2)nCN.

Bonding between CO and the MgO(001) surface: A modified picture

The interaction energy and equilibrium distance for adsorption of CO on a perfect MgO(001) surface has been calculated, using a cluster approach for representing the surface. The cluster size has been varied from one single Mg2+ ion up to Mg14O5. Ab initio model potentials (AIMP) were used to embed the explicitly described cluster while the rest of the crystal was taken to be point charges. The AIMP model potentials are shown to be a necessary and reliable improvement, compared with using only point charges as a model for the surrounding crystal. It is found that the electrostatic attraction and Pauli repulsion almost cancel each other and the small binding energy obtained is ascribed to dispersive forces. The interaction energy is calculated to be 0.07–0.09 eV (depending on which approach to basis set superposition errors corrections is taken); this is rather low in comparison with the experimental value of 0.3–0.4 eV.

Small Al clusters. II. Structure and binding in Aln (n=2–6, 13)

The structure and stability of aluminum clusters containing up to six atoms have been studied using correlated wave functions and extended basis sets. The lowest energy structure is planar for Al4 and Al5, but three dimensional for Al6. The icosahedral, hcp, fcc, and two planar structures of Al13 were considered at the SCF level. The lowest energy structure is the icosahedron, but the planar structures are fairly low lying even in this case. A simplified description using two‐ and three‐body interaction potentials is found to agree well with the ab initio structures and binding energies.