Liguang Xu

Attomolar DNA detection with chiral nanorod assemblies

Nanoscale plasmonic assemblies display exceptionally strong chiral optical activity. So far, their structural design was primarily driven by challenges related to metamaterials whose practical applications are remote. Here we demonstrate that gold nanorods assembled by the polymerase chain reaction into DNA-bridged chiral systems have promising analytical applications. The chiroplasmonic activity of side-by-side assembled patterns is attributed to a 7–9 degree twist between the nanorod axes. This results in a strong polarization rotation that matches theoretical expectations. The amplitude of the bisignate ‘wave’ in the circular dichroism spectra of side-by-side assemblies demonstrates excellent linearity with the amount of target DNA. The limit of detection for DNA using side-by-side assemblies is as low as 3.7 aM. This chiroplasmonic method may be particularly useful for biological analytes larger than 2–5 nm which are difficult to detect by methods based on plasmon coupling and ‘hot spots’. Circular polarization increases for inter-nanorod gaps between 2 and 20 nm when plasmonic coupling rapidly decreases. Reaching the attomolar limit of detection for simple and reliable bioanalysis of oligonucleotides may have a crucial role in DNA biomarker detection for early diagnostics of different diseases, forensics and environmental monitoring.

Self-Assembly of Chiral Nanoparticle Pyramids with Strong R/S Optical Activity

Chirality at the nanometer scale represents one of the most rapidly developing areas of research. Self-assembly of DNA-nanoparticle (NP) hybrids enables geometrically precise assembly of chiral isomers. The concept of a discrete chiral nanostructure of tetrahedral shape and topology fabricated from four different NPs located in the corners of the pyramid is fundamental to the field. While the first observations of optical activity of mixed pyramidal assemblies were made in 2009 (Chen, W.; Nano Lett. 2009, 9, 2153-2159), further studies are difficult without finely resolved optical data for precisely organized NP pyramidal enantiomers. Here we describe the preparation of a family of self-assembled chiral pyramids made from multiple metal and/or semiconductor NPs with a yield as high as 80%. Purposefully made R- and S-enantiomers of chiral pyramids with four different NPs from three different materials displayed strong chiroptical activity, with anisotropy g-factors as high as 1.9 × 10(-2) in the visible spectral range. Importantly, all NP constituents contribute to the chiroptical activity of the R/S pyramids. We were able to observe three different circular dichroism signals in the range of 350-550 nm simultaneously. They correspond to the plasmonic oscillations of gold, silver, and bandgap transitions of quantum dots. Tunability of chiroptical bands related to these transitions is essential from fundamental and practical points of view. The predictability of optical properties of pyramids, the simplicity of their self-assembly in comparison with lithography, and the possibility for polymerase chain reaction-based automation of their synthesis are expected to facilitate their future applications.

Side‐by‐Side and End‐to‐End Gold Nanorod Assemblies for Environmental Toxin Sensing

Controllable assembly of nanoscale building blocks (monomers) is a necessary part of practical realization of the unique optical, electrical, magnetic, and chemical properties of nanoscale matter in macroscale materials. Such assemblies also contain much fundamental information about collective behavior of nanocolloids, which we are just beginning to understand. The key decisive factors for the successful assembly of nanocolloids is the anisotropy of nanoscale interactions, which stems from both the shape of nanocolloids and unequal distribution of organic molecules on their surface. Gold nanorods (Au NRs) have both geometrical and chemical anisotropy components and demonstrate strong optical extinction in the range of visible and near-infrared (NIR) wavelengths convenient for both research and practical purposes. Au NRs can be assembled by interactions with organic molecules, polymers, an antibody–antigen reaction, biotin–strepavidin connectors, and DNA, leading to superstructures with different degree of organization and complexity of collective behavior. Besides the utilization of NR monomers in non-linear optics, cellular imaging, and cancer therapy, optical effects corresponding to monomer!superstructure transitions allowed preparation of excellent biosensors because of large changes in oscillation frequencies of plasmons when NR pairs are formed. These studies mostly targeted biomedical applications. Simultaneously, their unique sensing capabilities have been virtually unexplored for the needs of environmental detection and monitoring. These challenges and impact can equal or exceed those encountered in detection of cancer. A better understanding of methods for the realization of speed/selectivity/sensitivity detection of common environmental pollutants is thus of great importance. Therefore, we decided to explore the potential of NR assemblies taking a pervasive environmental toxin, namely microcystin-LR (MC-LR), as the model while also addressing the general questions about the choice of different assembly motif for different sensing tasks. MC-LR is common in both developed and developing countries, with recorded cases of mass poisoning. MC-LR originates from common bluegreen algae and causes rapid liver failure; prolonged exposure to small concentrations of MC-LR in drinking water causes liver cancer. Herein, we describe the successful use of Au NRs for detection of MC-LR, which is significantly more sensitive than the traditional techniques, such as ELISA, yielding detection limit of 5 pgmL . It is also much simpler and faster than any other methods. These two factors are critical for environmental monitoring and have been a long-standing challenge. The pattern of the assembly strongly affects the sensitivity parameters for MC-LR detection. To realize different modes of assembly, such as side-byside and end-to-end motifs, with a degree of control sufficient for conclusive evaluation of sensing implications, two kinds of protein-carrying Au NRs were synthesized (Figure 1). One type of NR carried MC-LR antibodies (ABs) preferentially on the sides, while the other type carried antibodies located almost exclusively in the ends. These motifs were formed by using either electrostatic binding or covalent attachment of the antibodies mediated by a bifinctional linker, thioctic acid (TA).When electrostatic forces govern the placement of ABs, they attach primarily to the sides of NRs due to the larger area of contact and thus stronger electrostatic interactions. When a TA anchor covalently binds by a S Au bond, the conjugation of the ABs occurs predominantly in the ends of the rods due to better accessibility of the gold surface to the reactive thiol end. Variation of pH also allows varying repulsion or attraction of NRs and MC-LR, modality of attachment, and geometrical characteristics of assemblies (see the Supporting Information). The number of AB molecules on the surface of one Au NR was estimated to be 31 and 10 for the side-by-side [*] L. Wang, Y. Zhu, L. Xu, Dr. W. Chen, H. Kuang, L. Liu, Prof. C. Xu School of Food Science and Technology, State Key Laboratory of Food Science and Technology Jiangnan University, Wuxi, 214122 (China) E-mail: xcl@jiangnan.edu.cn Dr. W. Chen, A. Agarwal, Prof. N. A. Kotov Department of Chemical Engineering, Department of Biomedical Engineering Department of Materials Science and Engineering University of Michigan, Ann Arbor, MI 48109 (USA) E-mail: kotov@umich.edu [] These authors contributed equally to this paper.

Regiospecific plasmonic assemblies for in situ Raman spectroscopy in live cells.

Multiple properties of plasmonic assemblies are determined by their geometrical organization. While high degree of complexity was achieved for plasmonic superstructures based on nanoparticles (NPs), little is known about the stable and structurally reproducible plasmonic assemblies made up from geometrically diverse plasmonic building blocks. Among other possibilities, they open the door for the preparation of regiospecific isomers of nanoscale assemblies significant both from a fundamental point of view and optical applications. Here, we present a synthetic method for complex assemblies from NPs and nanorods (NRs) based on selective modification of NRs with DNA oligomers. Three types of assemblies denoted as End, Side, and Satellite isomers that display distinct elements of regiospecificity were prepared with the yield exceeding 85%. Multiple experimental methods independently verify various structural features, uniformity, and stability of the prepared assemblies. The presence of interparticle gaps with finely controlled geometrical parameters and inherently small size comparable with those of cellular organelles fomented their study as intracellular probes. Against initial expectations, SERS intensity for End, Side, and Satellite isomers was found to be dependent primarily on the number of the NPs in the superstructures rationalized with the help of electrical field simulations. Incubation of the label-free NP-NR assemblies with HeLa cells indicated sufficient field enhancement to detect structural lipids of mitochondria and potentially small metabolites. This provided the first proof-of-concept data for the possibility of real-time probing of the local organelle environment in live cells. Further studies should include structural optimization of the assemblies for multitarget monitoring of metabolic activity and further increase in complexity for applications in transformative optics.

Fabricated aptamer-based electrochemical "signal-off" sensor of ochratoxin A.

An ultrasensitive and rapid electrochemical platform for the specific detection of ochratoxin A (OTA) was developed. In this method, three single-stranded DNA molecules, including the aptamer, were immobilized on the surface of an electrode. Binding of the OTA target analyte to the aptamer changed the redox current of methylene blue (MB), which was used as the electrochemical probe, in a manner that was dependent on OTA concentration. With signal enhancement from gold nanoparticle-functionalized DNA, the sensitivity of this method for OTA was as low as 30 pg/mL, and the effective sensing range was from 0.1 to 20 ng/mL. To investigate the sensing process, the conformational switch of the aptamer was studied by circular dichroism (CD), which confirmed the recognition of the aptamer by the target OTA. Given its sensitivity and rapid detection, we believe this approach has the potential to be a main technology for the detection of toxins in the field of food safety, and in other areas.

Unexpected chirality of nanoparticle dimers and ultrasensitive chiroplasmonic bioanalysis

Chiral assemblies of nanoparticles (NPs) are typically constructed with helical or tetrahedral geometries. Simple pairs of NPs are not expected to display chirality due to basic symmetry considerations made under the assumption of their spherical geometry. In this study we demonstrate that assemblies consisting of two metallic NPs do possess chirality and strongly rotate polarization of light. Their chiroplasmonic properties are attributed to the prolate geometry of individual colloidal particles. When bridged by biomolecules, the NP pairs acquire scissor-like geometry, with the long axes of NPs forming an angle of ~9°. This small dihedral angle results in chirality of the NP pair, while the consistency of its sign due to the specific conformation of the bridging biomacromolecules breaks the enantiomeric equivalence of the NP pairs. Strong polarization rotation in these nanoassemblies makes possible their utilization in biological analysis. Heterodimers of gold and silver NPs were made using antibody-antigen bridges. Taking advantage of their chiroplasmonic properties, we investigated their bioanalitical potential for detection of an environmental toxin, microcystin-LR, and a cancer biomarker, prostate-specific antigen. The order-of-magnitude improvements in limits of detection compared to all other analytical techniques are attributed to plasmonic enhancement of intrinsic chirality of biological compounds, strong optical coupling of photons with NP assemblies with twisted geometries, and signal amplification due to the bisignate nature of circular dichroism bands.

Dual-Mode Ultrasensitive Quantification of MicroRNA in Living Cells by Chiroplasmonic Nanopyramids Self-Assembled from Gold and Upconversion Nanoparticles.

Chiral self-assembled nanomaterials with biological applications have attracted great interest. In this study, DNA-driven gold-upconversion nanoparticle (Au-UCNP) pyramids were fabricated to detect intracellular microRNA (miRNA) in real time. The Au-UCNP pyramids are doubly optically active, displaying strong plasmonic circular dichroism (CD) at 521 nm and significant luminescence in 500-600 nm, and therefore can be monitored by both of them. CD will decrease while the luminescence intensity increases in the presence of miRNA. The experimental results show that the CD intensity had an outstanding linear range from 0.073 to 43.65 fmol/10 μg(RNA) and a limit of detection (LOD) of 0.03 fmol/10 μg(RNA), whereas the luminescence intensity ranged from 0.16 to 43.65 fmol/10 μg(RNA) with a LOD of 0.12 fmol/10 μg(RNA). These data indicate that the CD signal is much more sensitive to the concentration of miRNA than the luminescent signal, which is attributed to the strong CD intensity arising from the spin angular momentum of the photon interaction with chiral nanostructures and the plasmonic enhancement of the intrinsic chirality of DNA molecules in the pyramids. This approach opens up a new avenue to the ultrasensitive detection and quantification of miRNA in living cells.

SERS Encoded Silver Pyramids for Attomolar Detection of Multiplexed Disease Biomarkers

Three disease biomarkers can simultaneously be detected at the attomolar level because of a novel surface-enhanced Raman scattering (SERS) encoded silver pyramid sensing system. This newly designed pyramidal sensor with well-controlled geometry exhibits highly sensitive, selective, and reproducible SERS signals, and holds promising potential for biodetection applications.

Hierarchical Plasmonic Nanorods and Upconversion Core–Satellite Nanoassemblies for Multimodal Imaging‐Guided Combination Phototherapy

DNA-driven hierarchical core-satellite nanostructures with plasmonic gold nanorod dimers and upconversion nanoparticles are fabricated. Once the core-satellite structure is activated, combined photothermal therapy and photodynamic therapy are carried out under the guidance of upconversion luminesce, T1 -weighted magnetic resonance, photoacoustics, and computed tomography imaging of tumors in vivo, which exhibit the multifunctional biological applications of the DNA-based self-assemblies.

An aptamer-based chromatographic strip assay for sensitive toxin semi-quantitative detection

An aptamer-based chromatographic strip assay method for rapid toxin detection was developed. The aptamer-based strip assay was based on the competition for the aptamer between ochratoxin A and DNA probes. The sensing results indicated that the sensitivity of the aptamer-based strip was better than that of conventional antibody-based strips. The visual limit of detection of the strip for qualitative detection was 1 ng/mL while the LOD for semi-quantitative detection could down to 0.18 ng/mL by using scanning reader. The recoveries of test samples were from 96% to 110%. All detections could be achieved in less than 10 min, indicating that the aptamer-based strip could be a potential useful tool for rapid on-site detections.