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Featured researches published by Liming Qiu.


Biophysical Journal | 2009

Cholesterol Modulates the Interaction of β-Amyloid Peptide with Lipid Bilayers

Liming Qiu; Anthony Lewis; John Como; Mark W. Vaughn; Juyang Huang; Pentti Somerharju; Jorma A. Virtanen; Kwan Hon Cheng

The interaction of an amphiphilic, 40-amino acid beta-amyloid (Abeta) peptide with liposomal membranes as a function of sterol mole fraction (X(sterol)) was studied based on the fluorescence anisotropy of a site-specific membrane sterol probe, dehydroergosterol (DHE), and fluorescence resonance energy transfer (FRET) from the native Tyr-10 residue of Abeta to DHE. Without Abeta, peaks or kinks in the DHE anisotropy versus X(sterol) plot were detected at X(sterol) approximately 0.25, 0.33, and 0.53. Monomeric Abeta preserved these peaks/kinks, but oligomeric Abeta suppressed them and created a new DHE anisotropy peak at X(sterol) approximately 0.38. The above critical X(sterol) values coincide favorably with the superlattice compositions predicted by the cholesterol superlattice model, suggesting that membrane cholesterol tends to adopt a regular lateral arrangement, or domain formation, in the lipid bilayers. For FRET, a peak was also detected at X(sterol) approximately 0.38 for both monomeric and oligomeric Abeta, implying increased penetration of Abeta into the lipid bilayer at this sterol mole fraction. We conclude that the interaction of Abeta with membranes is affected by the lateral organization of cholesterol, and hypothesize that the formation of an oligomeric Abeta/cholesterol domain complex may be linked to the toxicity of Abeta in neuronal membranes.


Journal of Physical Chemistry B | 2011

Molecular dynamics simulations reveal the protective role of cholesterol in β-amyloid protein-induced membrane disruptions in neuronal membrane mimics.

Liming Qiu; Creighton Buie; Andrew Reay; Mark W. Vaughn; Kwan Hon Cheng

Interactions of β-amyloid (Aβ) peptides with neuronal membranes have been associated with the pathogenesis of Alzheimers disease (AD); however, the molecular details remain unclear. We used atomistic molecular dynamics (MD) simulations to study the interactions of Aβ(40) and Aβ(42) with model neuronal membranes. The differences between cholesterol-enriched and depleted lipid domains were investigated by the use of model phosphatidylcholine (PC) lipid bilayers with and without 40 mol % cholesterol. A total of 16 independent 200 ns simulation replicates were investigated. The surface area per lipid, bilayer thickness, water permeability barrier, and lipid order parameter, which are sensitive indicators of membrane disruption, were significantly altered by the inserted state of the protein. We conclude that cholesterol protects Aβ-induced membrane disruption and inhibits β-sheet formation of Aβ on the lipid bilayer. The latter could represent a two-dimensional (2D) seeding template for the formation of toxic oligomeric Aβ in the pathogenesis of AD.


Journal of Chemical Physics | 2014

Scaling and Alpha-Helix Regulation of Protein Relaxation in a Lipid Bilayer

Liming Qiu; Creighton Buie; Kwan Hon Cheng; Mark W. Vaughn

Protein conformation and orientation in the lipid membrane plays a key role in many cellular processes. Here we use molecular dynamics simulation to investigate the relaxation and C-terminus diffusion of a model helical peptide: beta-amyloid (Aβ) in a lipid membrane. We observed that after the helical peptide was initially half-embedded in the extracelluar leaflet of phosphatidylcholine (PC) or PC/cholesterol (PC/CHOL) membrane, the C-terminus diffused across the membrane and anchored to PC headgroups of the cytofacial lipid leaflet. In some cases, the membrane insertion domain of the Aβ was observed to partially unfold. Applying a sigmoidal fit to the process, we found that the characteristic velocity of the C-terminus, as it moved to its anchor site, scaled with θu (-4/3), where θu is the fraction of the original helix that was lost during a helix to coil transition. Comparing this scaling with that of bead-spring models of polymer relaxation suggests that the C-terminus velocity is highly regulated by the peptide helical content, but that it is independent of the amino acid type. The Aβ was stabilized by the attachment of the positive Lys28 side chain to the negative phosphate of PC or 3β oxygen of CHOL in the extracellular lipid leaflet and of the C-terminus to its anchor site in the cytofacial lipid leaflet.


Biophysical Chemistry | 2015

Lipid Insertion Domain Unfolding Regulates Protein Orientational Transition Behavior in a Lipid Bilayer

Kwan Hon Cheng; Liming Qiu; Sara Y. Cheng; Mark W. Vaughn


Bulletin of the American Physical Society | 2015

Scaling and Alpha-helix Regulation of Protein Relaxation in a Lipid Bilayer

Kwan Hon Cheng; Liming Qiu; Creighton Buie; Mark W. Vaughn


Bulletin of the American Physical Society | 2013

Exploring Beta-Amyloid Protein Transmembrane Insertion Behavior and Residue-Specific Lipid Interactions in Lipid Bilayers Using Multiscale MD Simulations

Liming Qiu; Mark W. Vaughn; Kelvin Cheng


Bulletin of the American Physical Society | 2012

Multiscale Molecular Dynamics Simulations of Beta-Amyloid Interactions with Neurons

Liming Qiu; Mark W. Vaughn; Kelvin Cheng


Biophysical Journal | 2012

A New Monte Carlo Method for Exploring the Surface Area, Volume and Voids of Molecules in Protein Containing Lipid Bilayers with Atomistic Detail

Liming Qiu; Sara Y. Cheng; Kwan H. Cheng; Mark W. Vaughn


Biophysical Journal | 2012

Atomistic MD Simulations Reveal the Protective Role of Cholesterol in the Membrane Disruptive Effects of Dimeric Beta-Amyloid in Neuronal Membrane Mimics

Liming Qiu; Creighton Buie; Sara Y. Cheng; George Chou; Mark W. Vaughn; Kwan Cheng


Bulletin of the American Physical Society | 2011

Atomistic MD simulations reveal the protective role of cholesterol in dimeric beta-amyloid induced disruptions in neuronal membrane mimics

Liming Qiu; Creighton Buie; Sara Cheng; George Chou; Mark W. Vaughn; Kwan Hon Cheng

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Sara Y. Cheng

University of California

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John Como

Texas Tech University

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