Linsheng Huang

Estimation of vertical distribution of chlorophyll concentration by bi-directional canopy reflectance spectra in winter wheat

An effective technique to measure foliage chlorophyll concentration (Chl) at a large scale and within a short time could be a powerful tool to determine fertilization amount for crop management. The objective of this study was to investigate the inversion of foliage Chl vertical-layer distribution by bi-directional reflectance difference function (BRDF) data, so as to provide a theoretical basis for monitoring the growth and development of winter wheat and for providing guidance on the application of fertilizer. Remote sensing could provide a powerful tool for large-area estimation of Chl. Because of the vertical distribution of leaves in a wheat stem, Chl vertical distribution characteristics show an obvious decreasing trend from the top of the canopy to the ground surface. The ratio of transformed chlorophyll absorption reflectance index (TCARI) to optimized soil adjusted vegetation index (OSAVI) was called the canopy chlorophyll inversion index (CCII) in this study. The value of CCII at nadir, ±20 and ±30°, at nadir, ±30 and ±40°, and at nadir, ±50 and ±60° view angles were selected and assembled as bottom-layer Chl inversion index (BLCI), middle-layer Chl inversion index (MLCI), and upper-layer Chl inversion index (ULCI), respectively, for the inversion of Chl at the vertical bottom layer, middle layer, and upper layer. The root mean squared error (RMSE) between BLCI-, MLCI-, and ULCI-derived and laboratory-measured Chl were 0.7841, 0.9426, and 1.7398, respectively. The vertical foliage Chl inversion could be used to monitor the crop growth status and to guide fertilizer and irrigation management. The results suggested that vegetation indices derived from bi-directional reflectance spectra (e.g., BLCI, ULCI, and MLCI) were satisfactory for inversion of the Chl vertical distribution.

New Optimized Spectral Indices for Identifying and Monitoring Winter Wheat Diseases

The vegetation indices from hyperspectral data have been shown to be effective for indirect monitoring of plant diseases. However, a limitation of these indices is that they cannot distinguish different diseases on crops. We aimed to develop new spectral indices (NSIs) that would be useful for identifying different diseases on crops. Three different pests (powdery mildew, yellow rust, and aphids) in winter wheat were used in this study. The new optimized spectral indices were derived from a weighted combination of a single band and a normalized wavelength difference of two bands. The most and least relevant wavelengths for different diseases were first extracted from leaf spectral data using the RELIEF-F algorithm. Reflectance of a single band extracted from the most relevant wavelengths and the normalized wavelength difference from all possible combinations of the most and least relevant wavelengths were used to form the optimized spectral indices. The classification accuracies of these new indices for healthy leaves and leaves infected with powdery mildew, yellow rust, and aphids were 86.5%, 85.2%, 91.6%, and 93.5%, respectively. We also applied these NSIs for nonimaging canopy data of winter wheat, and the classification results of different diseases were promising. For the leaf scale, the powdery mildew-index (PMI) correlated well with the disease index (DI), supporting the use of the PMI to invert the severity of powdery mildew. For the canopy scale, the detection of the severity of yellow rust using the yellow rust-index (YRI) showed a high coefficient of determination ( \mbiR2 = 0.86) between the estimated DI and its observations, suggesting that the NSIs may improve disease detection in precision agriculture application.

Leaf Area Index Estimation Using Vegetation Indices Derived From Airborne Hyperspectral Images in Winter Wheat

Continuous monitoring leaf area index (LAI) of field crops in a growing season has a great challenge. The development of remote sensing technology provides a good tool for timely mapping LAI regionally. In this study, hyperspectral reflectance data (405-835 nm) obtained from an airborne hyperspectral imager (Pushbroom Hyperspectral Imager) were used to model LAI of winter wheat canopy in the 2002 crop growing season. LAI was modeled based on its semi-empirical relationships with six vegetation indices (VIs), including ratio vegetation index (RVI), modified simple ratio index (MSR), normalized difference vegetation index (NDVI), a newly proposed index NDVI-like (which resembles NDVI), modified triangular vegetation index (MTVI2), and modified soil adjusted vegetation index (MSAVI). To assess the performance of these VIs, root mean square errors (RMSEs) and determination coefficient (R2) between estimated LAI and measured LAI were reported. Our result showed that NDVI-like was the most accurate predictor of LAI. The inclusion of a green band in MTVI2 trended to give a rise to a much quicker saturation with increase of LAI (e.g., over 3.5). MSAVI and MTVI2 showed comparable but lower potential than NDVI-like in estimating LAI. RVI and MSR demonstrated their lowest prediction accuracy, implying that they are more likely to be affected by environmental conditions such as atmosphere and cloud, thus cannot properly reflect the properties of winter wheat canopy. Our results support the use of VIs for a quick assessment of seasonal variations in winter wheat LAI. Among the indices we tested in this study, the newly developed NDVI-like model created the most accurate and reliable results.

Evaluation of the Consistency of MODIS Land Cover Product (MCD12Q1) Based on Chinese 30 m GlobeLand30 Datasets: A Case Study in Anhui Province, China

Land cover plays an important role in the climate and biogeochemistry of the Earth system. It is of great significance to produce and evaluate the global land cover (GLC) data when applying the data to the practice at a specific spatial scale. The objective of this study is to evaluate and validate the consistency of the Moderate Resolution Imaging Spectroradiometer (MODIS) land cover product (MCD12Q1) at a provincial scale (Anhui Province, China) based on the Chinese 30 m GLC product (GlobeLand30). A harmonization method is firstly used to reclassify the land cover types between five classification schemes (International Geosphere Biosphere Programme (IGBP) global vegetation classification, University of Maryland (UMD), MODIS-derived Leaf Area Index and Fractional Photosynthetically Active Radiation (LAI/FPAR), MODIS-derived Net Primary Production (NPP), and Plant Functional Type (PFT)) of MCD12Q1 and ten classes of GlobeLand30, based on the knowledge rule (KR) and C4.5 decision tree (DT) classification algorithm. A total of five harmonized land cover types are derived including woodland, grassland, cropland, wetland and artificial surfaces, and four evaluation indicators are selected including the area consistency, spatial consistency, classification accuracy and landscape diversity in the three sub-regions of Wanbei, Wanzhong and Wannan. The results indicate that the consistency of IGBP is the best among the five schemes of MCD12Q1 according to the correlation coefficient (R). The “woodland” LAI/FPAR is the worst, with a spatial similarity (O) of 58.17% due to the misclassification between “woodland” and “others”. The consistency of NPP is the worst among the five schemes as the agreement varied from 1.61% to 56.23% in the three sub-regions. Furthermore, with the biggest difference of diversity indices between LAI/FPAR and GlobeLand30, the consistency of LAI/FPAR is the weakest. This study provides a methodological reference for evaluating the consistency of different GLC products derived from multi-source and multi-resolution remote sensing datasets on various spatial scales.

Hyperspectral measurements of severity of stripe rust on individual wheat leaves

The objective of this study was to assess the effect of severity of stripe rust (Puccinia striiformis) on the hyperspectral reflectance of wheat. A total of 110 leaf samples with a range of disease severity were collected at the heading stage (Stage І, 29 April) and grain filling stage (Stage II, 21 May). The spectra of the adaxial and abaxial surfaces of the leaf samples were taken using an ASD Leaf Clip, and the spectral characteristics were analysed. The photochemical reflectance index (PRI) was used to build two linear regression functions from the two growth stages using 70 leaves, and the remaining 40 leaves were used to validate their effectiveness. The results indicated that P. striiformis caused changes in foliar water and chlorophyll, and those changes made it feasible to assess disease severity using in situ hyperspectral measurements. In general, the reflectance values from the adaxial surfaces of the leaf samples were smaller than the abaxial surfaces. In comparison to Stage І, the spectral contrast of four different disease severities was greater at Stage II. By comparing the regression functions, the coefficient of determination using the set of leaves for validation for Stage І (R2 = 0.74) was smaller than that for Stage II (R2 = 0.83). However, the coefficient of determination for validation for Stage І (R2 = 0.91) was slightly larger than that of Stage II (R2 = 0.90). The results suggest that the ASD Leaf Clip is an ideal tool to collect in situ hyperspectral measurements of wheat leaves showing symptoms of stripe rust, and Stage II is more appropriate to assess severity compared to Stage І.

The Estimation of Winter Wheat Yield Based on MODIS Remote Sensing Data

A yield estimation method by remote sensing was used to estimate the yield of winter wheat in Jiangsu province, China. The first step of this study was to extract the planting area of winter wheat from environmental satellite images and land -use map of Jiangsu province, meanwhile, correlation analyses were performed by using 8-day of composite Leaf Area Index (LAI) data from Moderate Resolution Imaging Spectroradiometer (MODIS) and statistical yield of corresponding counties. Secondly, the average LAI was calculated at the optimal growth period, and the statistical yields of wheat for all counties were collected, in which the former was chosen as the independent variable and the latter was the dependent variable, and the regression model was established. Finally, the accuracy and stability of the regression model were validated using the data of another year. The results indicated that the yield estimation model at provincial level was reliable, the Root Mean Square Error (RMSE) and the Mean Absolute Error (MAE) of the model was 12.1% and 9.7%, respectively. In addition, the yield estimation system of winter wheat in Jiangsu province was constructed and published based on ArcMap and ArcGIS Server.

A system for diagnosis of wheat leaf diseases based on Android smartphone

Owing to the shortages of inconvenience, expensive and high professional requirements etc. for conventional recognition devices of wheat leaf diseases, it does not satisfy the requirements of uploading and releasing timely investigation data in the large-scale field, which may influence the effectiveness of prevention and control for wheat diseases. In this study, a fast, accurate, and robust diagnose system of wheat leaf diseases based on android smartphone was developed, which comprises of two parts—the client and the server. The functions of the client include image acquisition, GPS positioning, corresponding, and knowledge base of disease prevention and control. The server includes image processing, feature extraction, and selection, and classifier establishing. The recognition process of the system goes as follow: when disease images were collected in fields and sent to the server by android smartphone, and then image processing of disease spots was carried out by the server. Eighteen larger weight features were selected by algorithm relief-F and as the input of Relevance Vector Machine (RVM), and the automatic identification of wheat stripe rust and powdery mildew was realized. The experimental results showed that the average recognition rate and predicted speed of RVM model were 5.56% and 7.41 times higher than that of Support Vector Machine (SVM). And application discovered that it needs about 1 minute to get the identification result. Therefore, it can be concluded that the system could be used to recognize wheat diseases and real-time investigate in fields.

Nitrogen vertical distribution by canopy reflectance spectrum in winter wheat

Nitrogen is a key factor for plant photosynthesis, ecosystem productivity and leaf respiration. Under the condition of nitrogen deficiency, the crop shows the nitrogen deficiency symptoms in the bottom leaves, while excessive nitrogen will affect the upper layer leaves first. Thus, timely measurement of vertical distribution of foliage nitrogen content is critical for growth diagnosis, crop management and reducing environmental impact. This study presents a method using bi-directional reflectance difference function (BRDF) data to invert foliage nitrogen vertical distribution. We developed upper-layer nitrogen inversion index (ULNI), middle-layer nitrogen inversion index (MLNI) and bottom-layer nitrogen inversion index (BLNI) to reflect foliage nitrogen inversion at upper layer, middle layer and bottom layer, respectively. Both ULNI and MLNI were made by the value of the ratio of Modified Chlorophyll Absorption Ration Index to the second Modified Triangular Vegetation Index (MCARI/MTVI2) referred to as canopy nitrogen inversion index (CNII) in this study at ±40° and ±50°, and at ±30° and ±40° view angles, respectively. The BLNI was composed by the value of nitrogen reflectance index (NRI) at ±20° and ±30° view angles. These results suggest that it is feasible to measure foliage nitrogen vertical-layer distribution in a large scale by remote sensing.

Crop Disease and Pest Monitoring by Remote Sensing

Plant diseases and pests can affect a wide range of commercial crops, and result in a significant yield loss. It is reported that at least 10% of global food production is lost due to plant diseases (Christou and Twyman, 2004; Strange and Scott, 2005). Excessive pesticides are used for protecting crops from diseases and pests. This not only increases the cost of production, but also raises the danger of toxic residue in agricultural products. Disease and pest control could be more efficient if disease and pest patches within fields can be identified timely and treated locally. This requires obtaining the information of disease infected boundaries in the field as early and accurately as possible. The most common and conventional method is manual field survey. The traditional ground-based survey method requires high labor cost and produces low efficiency. Thus, it is unfeasible for large area. Fortunately, remote sensing technology can provide spatial distribution information of diseases and pests over a large area with relatively low cost. The presence of diseases or insect feedings on plants or canopy surface causes changes in pigment, chemical concentrations, cell structure, nutrient, water uptake, and gas exchange. These changes result in differences in color and temperature of the canopy, and affect canopy reflectance characteristics, which can be detectable by remote sensing (Raikes and Burpee 1998). Therefore, remote sensing provides a harmless, rapid, and cost-effective means of identifying and quantifying crop stress from differences in the spectral characteristics of canopy surfaces affected by biotic and abiotic stress agents.

Fast detection of fenthion on fruit and vegetable peel using dynamic surface-enhanced Raman spectroscopy and random forests with variable selection

Dynamic surface-enhanced Raman spectroscopy (D-SERS) based on the state change of the substrate not only significantly enhances but also provides a highly reproducible Raman signal. Hence, we develop a fast and accurate method for the detection of fenthion on fruit and vegetable peel using D-SERS and random forests (RF) with variable selection. With uniform Ag nanoparticles, the dynamic spectra of fenthion solution at different concentrations were obtained using D-SERS, and fenthion solution greater than or equal to 0.05mg/L can be detected. Then, the quantitative analysis models of fenthion were developed by RF with variable selection for spectra of different range. The model of best performance is developed by RF and spectra of characteristic range with higher RF importance (top 40%), and the root mean square error of cross-validation is 0.0101mg/L. Moreover, the fenthion residue of tomato, pear, and cabbage peel were extracted by a swab dipped in ethanol and analyzed using the above method to further validate the practical effect. Compared to gas chromatography, the maximal relative deviation is below 12.5%, and the predicted recovery is between 87.5% and 112.5%. Accordingly, D-SERS and RF with variable selection can realize the fast, simple, ultrasensitive, and accurate analysis of fenthion residue on fruit and vegetable peel.