Long-Hui Lin

Genetic Structure and Demographic History Should Inform Conservation: Chinese Cobras Currently Treated as Homogenous Show Population Divergence

An understanding of population structure and genetic diversity is crucial for wildlife conservation and for determining the integrity of wildlife populations. The vulnerable Chinese cobra (Naja atra) has a distribution from the mouth of the Yangtze River down to northern Vietnam and Laos, within which several large mountain ranges and water bodies may influence population structure. We combined 12 microsatellite loci and 1117 bp of the mitochondrial cytochrome b gene to explore genetic structure and demographic history in this species, using 269 individuals from various localities in Mainland China and Vietnam. High levels of genetic variation were identified for both mtDNA and microsatellites. mtDNA data revealed two main (Vietnam + southern China + southwestern China; eastern + southeastern China) and one minor (comprising only two individuals from the westernmost site) clades. Microsatellite data divided the eastern + southeastern China clade further into two genetic clusters, which include individuals from the eastern and southeastern regions, respectively. The Luoxiao and Nanling Mountains may be important barriers affecting the diversification of lineages. In the haplotype network of cytchrome b, many haplotypes were represented within a “star” cluster and this and other tests suggest recent expansion. However, microsatellite analyses did not yield strong evidence for a recent bottleneck for any population or genetic cluster. The three main clusters identified here should be considered as independent management units for conservation purposes. The release of Chinese cobras into the wild should cease unless their origin can be determined, and this will avoid problems arising from unnatural homogenization.

The complete mitochondrial genome of Leiolepis reevesii (Sauria, Agamidae).

Abstract In this paper, we report the complete mitochondrial genome of Leiolepis reevesii (Sauria, Agamidae), which is a circular molecule of 16,908 bp in size and consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs and a control region. The A+T content of overall base composition of H-strand is 59.8% (T: 25.1%, C: 27.5%, A: 34.7%, G: 12.7%). Some short microsatellite-like repeat regions (polyA and polyT) are scattered in the control region. All the results provide powerful data to further study of the molecular systematics, species identification and conservation genetics.

The complete mitochondrial genome of Eremias vermiculata (Squamata: Lacertidae)

Abstract In this paper, we report the complete mitochondrial genome of Eremias vermiculata (Squamata: Lacertidae), which is a circular molecule of 19,914 bp in size and consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and 1 putative control region. The A + T content of overall base of the composition of H-strand is 59.8% (T: 28.9%, C: 27.2%, A: 30.9%, G: 13.0%). All of the results provide powerful data to further study of the molecular systematics, species identification and conservation genetics.

Global, regional, and cladistic patterns of variation in climatic niche breadths in terrestrial elapid snakes

Abstract We obtained geo-referenced occurrence and climatic data from individual localities for 59 species of terrestrial elapid snakes, used phylogenetic generalized least squares regression to investigate spatial and cladistic patterns of variation in climatic niche breadths, and compared patterns within and across regions and clades to see if they parallel or differ from each other. Specifically, we test (1) whether a species’ climatic niche breadth on a given niche axis relates to its position along that axis, and to its climatic niche breadth on another niche axis, and (2) whether variation in niche breadths among species is explained by within-locality variation in climatic conditions or by among-locality variation. We found that: (1) there is an overall global pattern, and patterns in individual regions or clades generally parallel each other and global patterns; (2) species in warmer environments have narrower temperature niche breadths (TNBs); (3) precipitation niche breadth (PNB) and position are positively related; (4) TNB and PNB are not related; and (5) within-locality variation in climatic conditions explains most variation in TNBs, whereas among-locality variation explains most variation in PNBs. Our results are consistent with those reported for lizards of the families Phrynosomatidae and Varanidae, confirm the importance of within-locality niche breadth to species niche breadth, and show a more important role of among-locality niche breadth in affecting species niche breadth in terrestrial elapids than in lizards.

Developmental stage does not affect resting metabolic rate in the monitor lizard, Varanus salvator

We have studied resting metabolic rate (RMR) of the water monitor lizard (Varanus salvator) at different developmental stages (hatchling, juvenile and adult) to test whether individuals at different ages differ in RMR when controlling for the effects of body mass. We found that: 1) resting metabolic rates of hatchlings, juveniles and adults were all positively related to their body mass with the same coefficients and that 2) developmental stage had a non-significant influence on the resting metabolic rate when controlling for the effects of body mass. Our results suggest that variation in resting metabolic rate for V. salvator is directly caused by body mass differences, which conforms to previous findings in mammal species and birds.

The complete mitochondrial genome of Acanthosaura lepidogaster (Squamata: Agamidae)

Abstract In this paper, we report the complete mitochondrial genome of Acanthosaura lepidogaster (Squamata, Agamidae), which is a circular molecule of 16 899 bp in size and consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a control region. The overall base composition is as follows: T (22.8%), C (30.5%), A (32.3%), and G (14.4%). We constructed a phylogeny that included for 10 species of Leiolepidinae lizards and one outgroup Leiocephalus personatus constructed in BEAST, based on 15 mitochondrial genes (12S, 16S, ND1, ND2, COI, COII, ATP8, ATP6, COIII, ND3, ND4L, ND4, ND5, ND6, and cytochrome b). The topology of the phylogenetic tree is broadly similar to that mentioned by Pyron et al.

The nearly complete mitochondrial genome of the rapid racerunner Eremias velox (Squamata: Lacertidae)

Abstract We report the nearly complete mitochondrial genome of the rapid racerunner, Eremias velox (Lacertidae), which is a circular molecule of 18,033 bp in size and consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs and a partial control region (2627 bp). The A + T content of overall base composition of H-strand is 58.0% (T: 27.7%, C: 28.3%, A: 30.3%, G: 13.7%). Some short microsatellite-like repeat regions (polyA and polyT) are scattered in the control region. All the results provide powerful data for further study of the molecular systematics, species identification and conservation genetics in this species and its congenators.