Lorna Dawson

The anaerobic digestion of solid organic waste

The accumulation of solid organic waste is thought to be reaching critical levels in almost all regions of the world. These organic wastes require to be managed in a sustainable way to avoid depletion of natural resources, minimize risk to human health, reduce environmental burdens and maintain an overall balance in the ecosystem. A number of methods are currently applied to the treatment and management of solid organic waste. This review focuses on the process of anaerobic digestion which is considered to be one of the most viable options for recycling the organic fraction of solid waste. This manuscript provides a broad overview of the digestibility and energy production (biogas) yield of a range of substrates and the digester configurations that achieve these yields. The involvement of a diverse array of microorganisms and effects of co-substrates and environmental factors on the efficiency of the process has been comprehensively addressed. The recent literature indicates that anaerobic digestion could be an appealing option for converting raw solid organic wastes into useful products such as biogas and other energy-rich compounds, which may play a critical role in meeting the worlds ever-increasing energy requirements in the future.

Effect of species, root branching order and season on the root traits of 13 perennial grass species

AimsInter-specific comparisons of plant traits may vary depending on intra-specific variation. Here we examine the impact of root branching order and season on key functional root traits for grass species. We also compare root traits among co-existing grass species as a step towards defining root trait syndromes.MethodsMonocultures of 13 grass species, grown under field conditions and subjected to intensive management, were used to record root trait values for coarse roots (1st order, >0.3xa0mm), fine roots (2nd and 3rd orders, <0.2xa0mm) and mixed root samples over three growing seasons.ResultsBranching order and species had a significant effect on root trait values, whereas season showed a marginal effect. The diameter of coarse roots was more variable than that of fine roots and, as expected, coarse roots had higher tissue density and lower specific root length values than fine roots. Principal component analysis run on eight root traits provided evidence for two trait syndromes related to resource acquisition and conservation strategies across grass species.ConclusionsOur data show that root branching order is the main determinant of root trait variation among species. This highlights the necessity to include the proportion of fine vs coarse roots when measuring traits of mixed root samples.

Distinct Circular Single-Stranded DNA Viruses Exist in Different Soil Types

ABSTRACT The potential dependence of virus populations on soil types was examined by electron microscopy, and the total abundance of virus particles in four soil types was similar to that previously observed in soil samples. The four soil types examined differed in the relative abundances of four morphological groups of viruses. Machair, a unique type of coastal soil in western Scotland and Ireland, differed from the others tested in having a higher proportion of tailed bacteriophages. The other soils examined contained predominantly spherical and thin filamentous virus particles, but the Machair soil had a more even distribution of the virus types. As the first step in looking at differences in populations in detail, virus sequences from Machair and brown earth (agricultural pasture) soils were examined by metagenomic sequencing after enriching for circular Rep-encoding single-stranded DNA (ssDNA) (CRESS-DNA) virus genomes. Sequences from the family Microviridae (icosahedral viruses mainly infecting bacteria) of CRESS-DNA viruses were predominant in both soils. Phylogenetic analysis of Microviridae major coat protein sequences from the Machair viruses showed that they spanned most of the diversity of the subfamily Gokushovirinae, whose members mainly infect obligate intracellular parasites. The brown earth soil had a higher proportion of sequences that matched the morphologically similar family Circoviridae in BLAST searches. However, analysis of putative replicase proteins that were similar to those of viruses in the Circoviridae showed that they are a novel clade of Circoviridae-related CRESS-DNA viruses distinct from known Circoviridae genera. Different soils have substantially different taxonomic biodiversities even within ssDNA viruses, which may be driven by physicochemical factors.

Overstory and understory vegetation interact to alter soil community composition and activity

AimTo test if there is an interactive effect between tree and understory species on the soil microbial community (SMC), community level physiological profiles (CLPP) and soil micro-fauna.MethodA replicate pot experiment with five sapling tree species (Betula pendula, Betula pubescens, Sorbus aucuparia, Quercus petraea and Pinus sylvestris) and a no-tree treatment with and without Calluna vulgaris was established. After 21xa0months samples were taken for phospholipid fatty acid (PLFA) analysis, CLPP and soil microfauna assessment.ResultsThere was an interactive effect of tree species and Calluna on the SMC, CLPP and nematode densities. Calluna addition changed the SMC composition (increase in fungal PLFAs) and the CLPP (lower utilisation of most carbon sources but greater utilisation of phenolic acids). A multivariate test for homogeneity of dispersion showed that while Calluna addition resulted in the presence of an altered microbial composition, it did not result in there being less variability among the samples with Calluna than among the samples without Calluna. Sapling trees with Calluna present grew less well than trees without Calluna. Structural equation modelling showed that it is possible that Calluna had an indirect effect on the SMC via below-ground tree biomass as well as a direct effect.ConclusionInteractions between trees and understory vegetation can impact on the composition of soil biota and their activity.

Effect of DTPA on Cd solubility in soil--accumulation and subsequent toxicity to lettuce.

In a controlled environment experiment, using Cd spiked soil, lettuce plants were grown under a range of DTPA levels and were subsequently harvested to determine levels of phytoaccumulation. Cadmium phytoaccumulation significantly increased with increasing soil Cd level (P<0.05) but unexpectedly decreased with increasing DTPA levels, despite the fact that solubility of Cd was increased in the soil. Cadmium translocation (from root to shoot) increased after DTPA application. Lettuce growth was inhibited by both Cd and DTPA (at and above 10 and 500 mg kg(-1) respectively), as a result of higher Cd mobility and subsequent toxicity which was caused by DTPA higher dosages. Metal solubility in the soil (ranged between 2.8 and 26.5 mg kg(-1)) was found to be significantly higher (P<0.01) as compared to control with increasing DTPA levels even after 3 months of DTPA application. Cadmium tissue concentration in all DTPA treatments was less than in the corresponding control treatment, indicating a negative effect of DTPA application on Cd uptake. In conclusion, lettuce was an unsuitable plant species for Cd accumulation, at least when associated with a DTPA chelator.

Chemical enhancement of soil based footwear impressions on fabric.

This study investigates the enhancement of footwear impressions prepared with soils from different locations on a variety of fabric surfaces with different morphology. Preliminary experiments using seventeen techniques were carried out and the best responding reagents were evaluated further. Results indicated that the soils investigated (a cross-section of soils from Scotland) are more likely to respond to reagents that target iron ions rather than calcium, aluminium or phosphorus ions. Furthermore, the concentration of iron and soil pH did not appear to have an effect on the performance of the enhancement techniques. For the techniques tested, colour enhancement was observed on all light coloured substrates while enhancement on dark coloured fabrics, denim and leatherette was limited due to poor contrast with the background. Of the chemical enhancement reagents tested, 2,2-dipyridil was a suitable replacement for the more common enhancement technique using potassium thiocyanate. The main advantages are the use of less toxic and flammable solvents and improved clarity and sharpness of the enhanced impression. The surface morphology of the fabrics did not have a significant effect on the enhancement ability of the reagents apart from a slight tendency for diffusion to occur on less porous fabrics such as polyester and nylon/lycra blends.

Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies

The ubiquity and transferability of soil makes it a resource for the forensic investigator, as it can provide a link between agents and scenes. However, the information contained in soils, such as chemical compounds, physical particles or biological entities, is seldom used in forensic investigations; due mainly to the associated costs, lack of available expertise, and the lack of soil databases. The microbial DNA in soil is relatively easy to access and analyse, having thus the potential to provide a powerful means for discriminating soil samples or linking them to a common origin. We compared the effectiveness and reliability of multiple methods and genes for bacterial characterisation in the differentiation of soil samples: ribosomal intergenic spacer analysis (RISA), terminal restriction fragment length polymorphism (TRFLP) of the rpoB gene, and five methods using the 16S rRNA gene: phylogenetic microarrays, TRFLP, and high throughput sequencing with Roche 454, Illumina MiSeq and IonTorrent PGM platforms. All these methods were also compared to long-chain hydrocarbons (n-alkanes) and fatty alcohol profiling of the same soil samples. RISA, 16S TRFLP and MiSeq performed best, reliably and significantly discriminating between adjacent, similar soil types. As TRFLP employs the same capillary electrophoresis equipment and procedures used to analyse human DNA, it is readily available for use in most forensic laboratories. TRFLP was optimized for forensic usage in five parameters: choice of primer pair, fluorescent tagging, concentrating DNA after digestion, number of PCR amplifications per sample and number of capillary electrophoresis runs per PCR amplification. This study shows that molecular microbial ecology methodologies are robust in discriminating between soil samples, illustrating their potential usage as an evaluative forensic tool.

Organic matter characterization of sediments in two river beaches from northern Portugal for forensic application

In a forensic investigation, the analysis of earth materials such as sediments and soils have been used as evidence at a court of law, relying on the study of properties such as color, particle size distribution and mineral identification, among others. In addition, the analysis of the organic composition of sediments and soils is of particular value, since these can be used as complementary independent evidence to the inorganic component. To investigate the usefulness of organic indicators in sediment characterization and discrimination, seventy-seven samples were collected during a period of one year in two river beaches located at the southern bank of the Douro River estuary in the North of Portugal. Isotopes of total carbon, pollen and plant wax-marker analyses were performed. In both beaches, an increase of the organic matter concentrations was noticeable, moving landward, related with the higher cover of associated plant material. The results obtained showed that the combination of all the techniques adopted showed a clear discrimination between samples from the two beaches, and also showed a differentiation of samples in relation to distance from the river in both beaches. The results also show that seasonality in these beaches was not a determining factor for discrimination, at the times considered. In addition, the effects of time was not marked.

Controls on soil solution nitrogen along an altitudinal gradient in the Scottish uplands

Nitrogen (N) deposition continues to threaten upland ecosystems, contributing to acidification, eutrophication and biodiversity loss. We present results from a monitoring study aimed at investigating the fate of this deposited N within a pristine catchment in the Cairngorm Mountains (Scotland). Six sites were established along an elevation gradient (486-908 m) spanning the key habitats of temperate maritime uplands. Bulk deposition chemistry, soil carbon content, soil solution chemistry, soil temperature and soil moisture content were monitored over a 5 year period. Results were used to assess spatial variability in soil solution N and to investigate the factors and processes driving this variability. Highest soil solution inorganic N concentrations were found in the alpine soils at the top of the hillslope. Soil carbon stock, soil solution dissolved organic carbon (DOC) and factors representing site hydrology were the best predictors of NO(3)(-) concentration, with highest concentrations at low productivity sites with low DOC and freely-draining soils. These factors act as proxies for changing net biological uptake and soil/water contact time, and therefore support the hypothesis that spatial variations in soil solution NO(3)(-) are controlled by habitat N retention capacity. Soil percent carbon was a better predictor of soil solution inorganic N concentration than mass of soil carbon. NH(4)(+) was less affected by soil hydrology than NO(3)(-) and showed the effects of net mineralization inputs, particularly at Racomitrium heath and peaty sites. Soil solution dissolved organic N concentration was strongly related to both DOC and temperature, with a stronger temperature effect at more productive sites. Due to the spatial heterogeneity in N leaching potential, a fine-scale approach to assessing surface water vulnerability to N leaching is recommended over the broad scale, critical loads approach currently in use, particularly for sensitive areas.

Investigation of sterols as potential biomarkers for the detection of pig (S. s. domesticus) decomposition fluid in soils

This study was carried out to evaluate the potential of using cholesterol and coprostanol, as indicators for the detection of decomposition fluid of buried pigs (S. s. domesticus) in soils. In May 2007, four pig carcasses (∼35kg) were buried in shallow graves (∼40 cm depth) at the University of Ontario Institute of Technology in Canada. Two pigs were exhumed after three months (Pig 1, Pig 2) and six months (Pig 3, Pig 4) post burial. Soil samples were collected beneath the pig carcasses (∼40cm depth) and from grave walls (∼15-20 cm depth) as well as from a parallel control site. Coprostanol and cholesterol were extracted from soils, purified with solid phase extraction (SPE) and analysed with gas chromatography/mass spectrometry (GC/MS). A significant increase in cholesterol concentrations (p<0.05) and amounts of coprostanol were detected in soil located beneath the pig carcasses after three months of burial. It is assumed that during the putrefaction and liquefaction stages of decomposition pig fluid which contains cholesterol and coprostanol is released into the underlying soil. Therefore, cholesterol and coprostanol could be used as potential biomarkers to detect the presence of decomposition fluid three months after burial under comparable soil and environmental conditions. Further research is suggested for additional soil sampling before and after three months to investigate the abundance of these and other sterols.