Luca Ambrogioni

Structurally-informed Bayesian functional connectivity analysis

Functional connectivity refers to covarying activity between spatially segregated brain regions and can be studied by measuring correlation between functional magnetic resonance imaging (fMRI) time series. These correlations can be caused either by direct communication via active axonal pathways or indirectly via the interaction with other regions. It is not possible to discriminate between these two kinds of functional interaction simply by considering the covariance matrix. However, the non-diagonal elements of its inverse, the precision matrix, can be naturally related to direct communication between brain areas and interpreted in terms of partial correlations. In this paper, we propose a Bayesian model for functional connectivity analysis which allows estimation of a posterior density over precision matrices, and, consequently, allows one to quantify the uncertainty about estimated partial correlations. In order to make model estimation feasible it is assumed that the sparseness structure of the precision matrices is given by an estimate of structural connectivity obtained using diffusion imaging data. The model was tested on simulated data as well as resting-state fMRI data and compared with a graphical lasso analysis. The presented approach provides a theoretically solid foundation for quantifying functional connectivity in the presence of uncertainty.

Theta oscillations locked to intended actions rhythmically modulate perception

Ongoing brain oscillations are known to influence perception, and to be reset by exogenous stimulations. Voluntary action is also accompanied by prominent rhythmic activity, and recent behavioral evidence suggests that this might be coupled with perception. Here, we reveal the neurophysiological underpinnings of this sensorimotor coupling in humans. We link the trial-by-trial dynamics of EEG oscillatory activity during movement preparation to the corresponding dynamics in perception, for two unrelated visual and motor tasks. The phase of theta oscillations (~4 Hz) predicts perceptual performance, even >1 s before movement. Moreover, theta oscillations are phase-locked to the onset of the movement. Remarkably, the alignment of theta phase and its perceptual relevance unfold with similar non-monotonic profiles, suggesting their relatedness. The present work shows that perception and movement initiation are automatically synchronized since the early stages of motor planning through neuronal oscillatory activity in the theta range. DOI: http://dx.doi.org/10.7554/eLife.25618.001

Dynamic decomposition of spatiotemporal neural signals

Neural signals are characterized by rich temporal and spatiotemporal dynamics that reflect the organization of cortical networks. Theoretical research has shown how neural networks can operate at different dynamic ranges that correspond to specific types of information processing. Here we present a data analysis framework that uses a linearized model of these dynamic states in order to decompose the measured neural signal into a series of components that capture both rhythmic and non-rhythmic neural activity. The method is based on stochastic differential equations and Gaussian process regression. Through computer simulations and analysis of magnetoencephalographic data, we demonstrate the efficacy of the method in identifying meaningful modulations of oscillatory signals corrupted by structured temporal and spatiotemporal noise. These results suggest that the method is particularly suitable for the analysis and interpretation of complex temporal and spatiotemporal neural signals.

Semi-Analytic Nonparametric Bayesian Inference for Spike-Spike Neuronal Connectivity

Estimating causal connectivity between spiking neurons from measured spike sequences is one of the main challenges of systems neuroscience. In this paper we introduce two nonparametric Bayesian methods for spike-membrane and spikespike causal connectivity based on Gaussian process regression. For spike-spike connectivity, we derive a new semi-analytic variational approximation of the response functions of a non-linear dynamical model of interconnected neurons. This semi-analytic method exploits the tractability of GP regression when the membrane potential is observed. The resulting posterior is then marginalized analytically in order to obtain the posterior of the response functions given the spike sequences alone. We validate our methods on both simulated data and real neuronal recordings.

Generative adversarial networks for reconstructing natural images from brain activity

ABSTRACT We explore a method for reconstructing visual stimuli from brain activity. Using large databases of natural images we trained a deep convolutional generative adversarial network capable of generating gray scale photos, similar to stimuli presented during two functional magnetic resonance imaging experiments. Using a linear model we learned to predict the generative models latent space from measured brain activity. The objective was to create an image similar to the presented stimulus image through the previously trained generator. Using this approach we were able to reconstruct structural and some semantic features of a proportion of the natural images sets. A behavioural test showed that subjects were capable of identifying a reconstruction of the original stimulus in 67.2% and 66.4% of the cases in a pairwise comparison for the two natural image datasets respectively. Our approach does not require end‐to‐end training of a large generative model on limited neuroimaging data. Rapid advances in generative modeling promise further improvements in reconstruction performance. HIGHLIGHTSA generative adversarial network (DCGAN) is used for reconstructing visual percepts.Minimizing image loss, a linear model learns to predict the latent space from BOLD.With a GAN limited to 6 handwritten characters, detailed features can be retrieved.Reconstructions of arbitrary natural images are identifiable by human raters.The specific GAN is a component and replaceable by advanced deterministic generators.