Luiz Flamarion B. Oliveira

KARYOTYPES OF NINETEEN MARSUPIAL SPECIES FROM BRAZIL

Abstract Karyotypes of 127 individuals, representing 19 species of 10 genera of Brazilian marsupials (Didelphidae) were determined, with karyotypes of Gracilinanus emiliae and G. microtarsus, Marmosops incanus, Thylamys velutinus, and Philander frenata being described for the 1st time. The specimens were collected from 24 localities, in an area between 4°N (Surumú, Roraima) and 31°S (Mostardas, Rio Grande do Sul), in Brazil. Only 3 diploid numbers were found, 2n = 14 in G. emiliae, G. microtarsus, G. agilis, Marmosa murina, Marmosops parvidens, M. incanus, Micoureus demerarae, and T. velutinus; 2n = 18 in Monodelphis dimidiata, M. brevicaudata, M. kunsi, and M. domestica; and 2n = 22 in Chironectes minimus, Lutreolina crassicaudata, Didelphis albiventris, D. aurita, D. marsupialis, Philander opossum, and P. frenata.

CHROMOSOME STUDIES OF SEVEN SPECIES OF OLIGORYZOMYS (RODENTIA: SIGMODONTINAE) FROM BRAZIL

Abstract Karyotypes of 7 taxa of the rodent genus Oligoryzomys trapped in 33 localities from an area ranging from 01°N to 32°S in Brazil were analyzed. Three species were trapped exclusively in the Cerrado biome: O. stramineus, diploid number (2n) = 52, fundamental number (herein, number of autosomal arms; FN) = 68; O. eliurus, 2n = 62, with 2 fundamental numbers, FN = 64 and 66; and Oligoryzomys sp., 2n = 70, FN = 74. In the Amazon, we caught O. cf. messorius, 2n = 56, FN = 58, and O. microtis, 2n = 66, FN = 74. Oligoryzomys nigripes (2n = 61, 62, FN = 80–82) was trapped in 24 localities in various biomes, and O. flavescens from several sites in southern Brazil presented the same karyotypes as those already described at other sites. The C- and NOR-banding were performed for all species, and the (T2AG3)n telomeric probe hybridized in situ to both the short and long arms of all pairs of karyotypes of O. cf. messorius, O. eliurus, and Oligoryzomys sp. An analysis performed with 11 microsatellite DNA heterologous primers improved differentiation of O. nigripes from O. eliurus individuals, 2 species that presented 2n = 62 and that were trapped at the same site.

COEXISTENCE OF PECCARIES AND FERAL HOGS IN THE BRAZILIAN PANTANAL WETLAND: AN ECOMORPHOLOGICAL VIEW

Abstract Niche partitioning among sympatric populations of white-lipped peccary (Tayassu pecari), collared peccary (Pecari tajacu), and feral hog (Sus scrofa) is evaluated using an ecomorphological approach. Masticatory apparatus and head-elevation lever system of the 3 species are compared by skull measures related to moment arms of associated muscles. Force-rates based on the equation of static equilibrium are proposed as a basis of comparison between species-specific cranial designs related to mastication and digging ability. Morphofunctional data suggest that feral hogs have a powerful bite and are able to feed on seeds of different degrees of resistance. With an optimized lever system of head elevation, feral hogs are more efficient than peccaries at rooting. These facts, along with the capacity of feral hogs to explore a wide range of habitats, support the view that the species acts as a potential competitor of native peccaries.

Phylogenetic relationships among species of the genus Calomys with emphasis on south american lowland taxa

Abstract Calomys Waterhouse, 1837, is one of the most speciose genera of the Phyllotini tribe of the South American sigmodontine rodents. Distributed predominately in southern South America, the genus has been proposed to have originated in the central Andes with further differentiation as subsequent occupations of the lowlands of the continent occurred. In this study, 30 newly obtained sequences of the cytochrome-b gene from specimens collected in Brazil were analyzed in conjunction with data available in GenBank in an attempt to discern the dispersion patterns of this genus in the South American lowlands. The analyses support a scenario where a phyllotine lineage appeared in the Andes and later separated into 2 larger clades. Members of 1 clade remained in the highlands (C. musculinus, C. lepidus, and C. sorellus), experiencing some local differentiation. Members of the 2nd clade invaded the lowlands of South America, especially nonforested biomes, where they underwent intense differentiation resulting in species with wide distributions in the continent. In the lowland clade, the “callosus–venustus” group is more derived, is characterized by a larger body size, and has a broad distribution; differentiation of this group was probably accompanied by some reduction in chromosomal diploid numbers.

T2AG3)n telomeric sequence hybridization indicating centric fusion rearrangements in the karyotype of the rodent oryzomys subflavus.

Chromosome preparations of 30 specimens of Oryzomys subflavus trapped in eight Brazilian localities were C-, and G-banded and analyzed by fluorescence in situ hybridization (FISH). Two karyotypes were found, 2n = 50/FN = 64, at three coastal localities of the Atlantic Forest domain, and 2n = 58/FN = 70 at two sites located in the Cerrado biome, Brazil Central. Two fluorescence in situ hybridization (FISH) patterns of the telomeric sequence (T2AG3)n were observed: in both karyotypes the probes hybridized to the telomeres of all chromosomes and also a hybridization signal in the centromeric regions of two autosome pairs was seen in the 2n = 50 karyotype. These results, together with the occurrence of other diploid numbers described in the literature, suggest that O. subflavus is a complex species, bearing fusion/fission rearrangements proper to the different biomes which it inhabits.

Phylogenetic relationships and phylogeographic patterns in Monodelphis (Didelphimorphia: Didelphidae)

Abstract Monodelphis (short-tailed opossums) is the most speciose South American marsupial genus, wtih species distributed from Panama to Argentina. The goal of the present study was to analyze levels and patterns of genetic variation in M. brevicaudata (Guianan short-tailed opossum), M. dimidiata (yellow-sided opossum), M. domestica (gray short-tailed opossum), and M. kunsi (pygmy short-tailed opossum) using sequences of the mitochondrial cytochrome b (Cytb) and nuclear interphotoreceptor retinoid-binding protein (IRBP) genes from individuals sampled in the Amazon, Cerrado, Caatinga, Atlantic Forest, and Pampa biomes in Brazil. Species relationships also were analyzed using sequences of 9 other Monodelphis species retrieved from GenBank and representing 3 localities in Brazil and 17 sites in other South American countries. M. domestica and M. brevicaudata showed phylogeographic structure, but M. dimidiata and M. kunsi did not. Maximum parsimony, maximum likelihood, and Bayesian algorithms showed similar topologies for estimated phylogenetic trees. Analyses of individual genes produced comparable results, but combined loci produced trees with higher support. All Monodelphis haplotypes were monophyletic, with M. emiliae (Emilias short-tailed opossum) sister to all other species, which form 2 groups. M. brevicaudata (from the Amazon) forms a well-supported clade with M. domestica (which occupies several biomes) and 2 unidentified Amazonian species. The other branch has M. kunsi (from the Cerrado) as sister to a well-supported clade of 5 Amazonian species.

Divergence in Zygodontomys (Rodentia: Sigmodontinae) and Distribution of Amazonian Savannas

Northern South America presents a diverse array of nonforest or savanna-like ecosystems that are patchily distributed. The distribution of these open habitats has been quite dynamic during Quaternary glacial-interglacial cycles; yet, the relevance of climatically driven vicariance events to the diversification of nonforest Amazonian vertebrates remains poorly known. We analyzed karyologic and mitochondrial DNA sequence data of the genus Zygodontomys, a small cricetid rodent distributed throughout nonforest habitats of northern Amazonia. Samples analyzed represented 4 Brazilian Amazonian localities and 2 French Guiana localities. Karyologic variation among Amazonian Brazilian Zygodontomys populations is high, with, at least, 3 karyomorphotypes. Molecular phylogenetic analyses recovered 3 major clades congruent with known karyotypes, a finding that suggests the existence of 3 species, 2 of which currently undescribed. The French Guiana and Surumú clade, identified as Zygodontomys brevicauda microtinus, is characterized by 2n = 86 and is sister to the clade formed by the 2 nondescribed forms. The Rio Negro-Rio Branco form is characterized by 2n = 82, and the Ferreira Gomes-Itapoá form is characterized by 2n = 84. The distribution of the 3 Zygodontomys lineages identified is in accordance with the geography of the open vegetation patches in Northern Amazonia, and divergence time estimates relate speciation events to the middle-upper Pleistocene, supporting the prominent role of Quaternary climatically driven vicariance events in the diversification of the genus.

Line Transect Surveys Underdetect Terrestrial Mammals: Implications for the Sustainability of Subsistence Hunting

Conservation of Neotropical game species must take into account the livelihood and food security needs of local human populations. Hunting management decisions should therefore rely on abundance and distribution data that are as representative as possible of true population sizes and dynamics. We simultaneously applied a commonly used encounter-based method and an infrequently used sign-based method to estimate hunted vertebrate abundance in a 48,000-km2 indigenous landscape in southern Guyana. Diurnal direct encounter data collected during three years along 216, four-kilometer -long transects consistently under-detected many diurnal and nocturnal mammal species readily detected through sign. Of 32 species analyzed, 31 were detected by both methods; however, encounters did not detect one and under-detected another 12 of the most heavily hunted species relative to sign, while sign under-detected 12 never or rarely collected species relative to encounters. The six most important game animals in the region, all ungulates, were not encountered at 11–40% of village and control sites or on 29–72% of transects where they were detected by sign. Using the sign methodology, we find that tapirs, one of the terrestrial vertebrates considered most sensitive to overexploitation, are present at many sites where they were never visually detected during distance sampling. We find that this is true for many other species as well. These high rates of under-detection suggest that behavioral changes in hunted populations may affect apparent occurrence and abundance of these populations. Accumulation curves (detection of species on transects) were much steeper for sign for 12 of 16 hunted species than for encounters, but that pattern was reversed for 12 of 16 species unhunted in our area. We conclude that collection of sign data is an efficient and effective method of monitoring hunted vertebrate populations that complements encounter and camera-trapping methods in areas impacted by hunting. Sign surveys may be the most viable method for large-scale, management-oriented studies in remote areas, particularly those focused on community-based wildlife management.

Mammal diversity influences the carbon cycle through trophic interactions in the Amazon

Biodiversity affects many ecosystem functions and services, including carbon cycling and retention. While it is known that the efficiency of carbon capture and biomass production by ecological communities increases with species diversity, the role of vertebrate animals in the carbon cycle remains undocumented. Here, we use an extensive dataset collected in a high-diversity Amazonian system to parse out the relationship between animal and plant species richness, feeding interactions, tree biomass and carbon concentrations in soil. Mammal and tree species richness is positively related to tree biomass and carbon concentration in soil—and the relationship is mediated by organic remains produced by vertebrate feeding events. Our research advances knowledge of the links between biodiversity and carbon cycling and storage, supporting the view that whole community complexity—including vertebrate richness and trophic interactions—drives ecosystem function in tropical systems. Securing animal and plant diversity while protecting landscape integrity will contribute to soil nutrient content and carbon retention in the biosphere.A high-diversity Amazonian system reveals the influence of mammalian diversity on the carbon cycle, mediated through vertebrate feeding events.

DNA sequence analysis and the phylogeographical history of the rodent Deltamys kempi (Sigmodontinae, Cricetidae) on the Atlantic Coastal Plain of south of Brazil.

The rodent Deltamys kempi Thomas, 1917 is found on the Coastal Plain – a recently formed geographic region located on Brazil’s south‐east coast. Considering that Deltamys is the only South American sigmodontine with a sex chromosome system of type X1X1X2X2/X1X2Y, this investigation was focused on the phylogeographic history of this taxon by using gene sequence analysis, trying to clarify when Deltamys differentiated, what was its centre of diversification, and what were the probable routes it used to reach its present distribution. We analysed sequences of the mitochondrial cytochrome b gene and nuclear recombination activating gene 2, performed cranial measurements and searched for centric fusions in individuals collected in distinct localities. The results, clearly demonstrate that D. kempi, on the Coastal Plain, divided into two groups, one occupying a small portion to the north of this region and the other spreading widely to the south. In this process, the phenomena of marine transgression and regressions which moulded its habitat, together with the occurrence of successive chromosomal rearrangements, were certainly the fundamental factors in shaping D. kempi diversification.