M. Karin de Boer
University of Groningen
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Publication
Featured researches published by M. Karin de Boer.
Journal of Phycology | 2001
Anita Buma; M. Karin de Boer; Peter Boelen
During a survey from January to March 1998, the occurrence of UV‐B radiation (UVBR)‐ induced DNA damage in Antarctic marine phytoplankton and bacterioplankton was investigated. Sampling was done in Ryder Bay, off the British base Rothera Station, 67°S, 68°W (British Antarctic Survey). Samples were taken regularly during the survey period at fixed depths, after which DNA damage was measured in various plankton size fractions (>10, 2–10, and 0.2–2 μm). Incident solar radiation was measured using spectroradiometry, whereas attenuation of biologically effective UVBR was studied using a DNA dosimeter. A diatom bloom was found in the bay during the research period, judging from microscopic observations and HPLC analyses of taxon‐specific pigments. The high phytoplankton biomass likely caused strong attenuation of DNA effective UVBR (Kbd‐eff). Kbd‐eff values ranged from 0.83·m−1 at the peak of the bloom to 0.47·m−1 at the end of the season. UVBR‐mediated DNA damage, as measured by cyclobutane pyrimidine dimer (CPD) abundance, was detected in all plankton size fractions. Highest levels were found in the smallest size fraction, mainly consisting of heterotrophic bacteria. Clear CPD depth profiles were found during mid‐summer (January, beginning of February) with surface levels exceeding 100 CPDs per million nucleotides in the bacterioplankton fraction. At that time, melting of the continuously present shelf ice caused strong salinity gradients in the upper meters, thereby stimulating water column stabilization. At the end of February and beginning of March, this phenomenon was less pronounced or absent. At that time, DNA damage was homogeneously distributed over the first 10 m, ranging between 20 and 30 CPDs per million nucleotides for the smallest size fraction.
Journal of Photochemistry and Photobiology B-biology | 2001
Anita Buma; E. Walter Helbling; M. Karin de Boer; Virginia E. Villafañe
Natural marine phytoplankton assemblages from Bahía Bustamante (Chubut, Argentina, 45 degrees S, 66.5 degrees W), mainly consisting of cells in the picoplankton size range (0.2-2 microm), were exposed to various UVBR (280-315 nm) and UVAR (315-400 nm) regimes in order to follow wavelength-dependent patterns of cyclobutane pyrimidine dimer (CPD) induction and repair. Simultaneously, UVR induced photosynthetic inhibition was studied in radiocarbon incorporation experiments. Biological weighting functions (BWFs) for photoinhibition and for CPD induction, the latter measured in bare calf thymus DNA, differed in the UVAR region: carbon incorporation was reduced markedly due to UVAR, whereas no measurable UVAR effect was found on CPD formation. In contrast, BWFs for inhibition of photosynthesis and CPD accumulation were fairly similar in the UVBR region, especially above 300 nm. Incubation of phytoplankton under full solar radiation caused rapid CPD accumulation over the day, giving maximum damage levels exceeding 500 CPD MB(-1) at the end of the afternoon. A clear daily pattern of CPD accumulation was found, in keeping with the DNA effective dose measured by a DNA dosimeter. In contrast, UVBR induced photosynthetic inhibition was not dose related and remained nearly constant during the day. Screening of UVBR or UVR did not cause significant CPD removal, indicating that photoreactivation either by PAR or UVAR was of minor importance in these organisms. High CPD levels were found in situ early in the morning, which remained unaffected notwithstanding treatments favoring photorepair. These results imply that a proportion of cells had been killed by UVBR exposure prior to the treatments. Our data suggest that the limited potential for photoreactivation in picophytoplankton assemblages from the southern Atlantic Ocean causes high CPD accumulation as a result of UVBR exposure.
Plant Ecology | 2006
Peter Boelen; M. Karin de Boer; N. Bakker; Jelte Rozema
In this review all recent field studies on the effects of UV-B radiation on bryophytes are discussed. In most of the studies fluorescent UV-B tubes are used to expose the vegetation to enhanced levels of UV-B radiation to simulate stratospheric ozone depletion. Other studies use screens to filter the UV-B part of the solar spectrum, thereby comparing ambient levels of UV-B with reduced UV-B levels, or analyse effects of natural variations in UV-B arising from stratospheric ozone depletion. Nearly all studies show that mosses are well adapted to ambient levels of UV-B radiation since UV-B hardly affects growth parameters. In contrast with outdoor studies on higher plants, soluble UV-B absorbing compounds in bryophytes are typically not induced by enhanced levels of UV-B radiation. A few studies have demonstrated that UV-B radiation can influence plant morphology, photosynthetic capacity, photosynthetic pigments or levels of DNA damage. However, there is only a limited number of outdoor studies presented in the literature. More additional, especially long-term, experiments are needed to provide better data for statistical meta-analyses. A mini UV-B supplementation system is described, especially designed to study effects of UV-B radiation at remote field locations under harsh conditions, and which is therefore suited to perform long-term studies in the Arctic or Antarctic. The first results are presented from a long-term UV-B supplementation experiment at Signy Island in the Maritime Antarctic.
Coastal Management | 2016
Ruurd van der Meer; M. Karin de Boer; Viola Liebich; Cato ten Hallers; Marcel Veldhuis; Karin Ree
ABSTRACT The ballast water from ships carries marine organisms that have invasive potential. The International Maritime Organization Ballast Water Management Convention (2004) requires ballast water exchange or ballast water management (BWM) systems either onboard or ashore. Ships can be exempted on the basis of risk assessment, when exclusively sailing between specific ports or in an enclosed area. In reply to our questionnaire, the shipping sector argues that the North Sea is ecologically homogeneous and exemptions could therefore be granted. This paper proposes that the North Sea area is, in fact, not homogeneous in terms of hydrographical and biological conditions; therefore, ballast water is a relevant transport mechanism for organisms. Within the North Sea, the short shipping routes indicate a high risk for survival. We examined actual simulation models for ballast water risk assessment in the North Sea, and we have identified the major parameters that need to be included in such models. These models provided a basis; they further need to be combined and adapted for the purpose of evaluating the rationale for an exemption. We concluded that exemptions from BWM are not recommended for the North Sea area. Anticipating the Ballast Water Management Convention, ship owners might do well to study possibilities for installing BWM systems onboard.
Marine Ecology Progress Series | 2001
E. Walter Helbling; Anita Buma; M. Karin de Boer; Virginia E. Villafañe
Toxicon | 2004
Meng Fu; Albert Koulman; Marion van Rijssel; Arne Lützen; M. Karin de Boer; Monika R. Tyl; Gerd Liebezeit
Journal of Sea Research | 2001
Wiebe H. C. F. Kooistra; M. Karin de Boer; Engel G. Vrieling; Laurie B. Connell; Winfried W. C. Gieskes
Aquatic Microbial Ecology | 2004
M. Karin de Boer; Monika R. Tyl; Engel G. Vrieling; Marion van Rijssel
Harmful Algae | 2009
M. Karin de Boer; Monika R. Tyl; Meng Fu; Gemma Kulk; Gerd Liebezeit; Carmelo R. Tomas; Allison Lenzi; Jerome Naar; Engel G. Vrieling; Marion van Rijssel
Journal of Plankton Research | 2004
M. Karin de Boer; Elise M. Koolmees; Engel G. Vrieling; Anneke M. Breeman; Marion van Rijssel