M. L. Skotnicki

Biological invasions in the Antarctic: extent, impacts and implications

Alien microbes, fungi, plants and animals occur on most of the sub‐Antarctic islands and some parts of the Antarctic continent. These have arrived over approximately the last two centuries, coincident with human activity in the region. Introduction routes have varied, but are largely associated with movement of people and cargo in connection with industrial, national scientific program and tourist operations. The large majority of aliens are European in origin. They have both direct and indirect impacts on the functioning of species‐poor Antarctic ecosystems, in particular including substantial loss of local biodiversity and changes to ecosystem processes. With rapid climate change occurring in some parts of Antarctica, elevated numbers of introductions and enhanced success of colonization by aliens are likely, with consequent increases in impacts on ecosystems. Mitigation measures that will substantially reduce the risk of introductions to Antarctica and the sub‐Antarctic must focus on reducing propagule loads on humans, and their food, cargo, and transport vessels.

Genetic diversity, mutagenesis and dispersal of Antarctic mosses – a review of progress with molecular studies

In investigating the extent of genetic diversity in Antarctic mosses the RAPD technique has proven especially useful in demonstrating that these mosses exhibit extensive genetic variation (levels being similar to those in temperate regions), and that within-colony variation is apparently caused not only by immigration and establishment of propagules from elsewhere, but also by mutagenesis. Dispersal of these mosses can also be followed using the RAPD technique; both short-distance dispersal by wind or water (depending on the moss species) and longer distance dispersal by wind across the ice cap has been demonstrated. Relationships with temperate mosses of the same species are being investigated to determine the origins of Antarctic populations. Genetic technology is also facilitating the taxonomic identification of moss specimens which cannot be identified morphologically due to phenotypic plasticity in Antarctica. Together, these genetic studies are starting to provide information of fundamental scientific importance for understanding the evolution, origins and dispersal mechanisms of Antarctic mosses, and their response to climate change.

Dispersal of the moss Campylopus pyriformis on geothermal ground near the summits of Mount Erebus and Mount Melbourne, Victoria Land, Antarctica

Mount Melbourne in northern Victoria Land, Antarctica, is a glaciated 2733 m volcanic cone. The moss Compylopus pyriformis occurs on two small areas of steam-warmed snow-free ground near its summit. This moss species also occurs in temperate regions world-wide, but has not been recorded elsewhere in continental Antarctica. RAPD (Random Amplified Polymorphic DNA) studies of 26 samples of C. pyriformis from two areas of heated ground on Mount Melbourne showed there was genetic diversity within the population. Genetic evidence for dispersal between the two sites, together with some genetic variation within individual colonies, indicates a single colonisation event has probably occurred at this extremely isolated location followed by multiple mutations. A single sample of moss protonema was collected 25 years ago from steam-warmed ground near the summit of another volcano, Mount Erebus (3794 m), on Ross Island some 300 km south of Mount Melbourne. The moss could not be identified based on morphological and reproductive criteria, as all attempts to differentiate it to a recognisable gametophyte were unsuccessful. The RAPD technique has now shown it to be C. pyriformis, and closely related to the population on Mount Melbourne.

The genomic sequence of cardamine chlorotic fleck carmovirus

The complete genomic sequence of cardamine chlorotic fleck carmovirus (CCFV) has been determined. The genome is a positive-sense ssRNA molecule 4041 nucleotides in length, and has 47 to 64% sequence identity with turnip crinkle, carnation mottle and melon necrotic spot carmoviruses. CCFV and these other carmoviruses have four similar open reading frames (ORFs), and CCFV has large regions of amino acid identity in all of these ORFs with a European isolate of turnip crinkle virus. CCFV, which replicates well in Arabidopsis thaliana, has only been found so far in Australia in the wild perennial brassica Cardamine lilacina.

High levels of genetic variability in the moss Ceratodon purpureus from continental Antarctica, subantarctic Heard and Macquarie Islands, and Australasia

The random amplified polymorphic DNA (RAPD) technique, and DNA sequencing of the conserved nuclear ribosomal DNA internal transcribed spacer region (ITS1-5.8S-ITS2), have been used to assess levels of genetic diversity in the moss Ceratodon purpureus from several locations in Australasia, subantarctic Heard and Macquarie Islands, and continental Antarctica. Populations from Heard and Macquarie Islands and from Antarctica maintain high levels of genetic variation. Both within- and among-colony variation were observed at these locations. DNA sequence analysis showed that samples from the Ross Sea region of Antarctica were most closely related to colonies from Casey and Macquarie Island, and that one colony from Heard Island was most closely related to one from Europe. DNA sequence data separated two Australian populations from the Antarctic and subantarctic group on a dendrogram. Detailed RAPD analysis of a single colony from continental Antarctica demonstrated that mutation probably causes the high variability observed in this moss. DNA sequencing and RAPD analysis are complementary techniques for genetic investigation of Antarctic moss populations.

Genetic variation in populations of kennedya yellow mosaic tymovirus

SummaryKennedya yellow mosaic tymovirus (KYMV) occurs along the eastern Australian seaboard in the perennial legumesDesmodium triflorum andD. scorpiurus in the north, andKennedya rubicunda in the south. The genetic variation of more than 100 isolates of KYMV, most of them from the north, has been studied using an RNA hybrid mismatch polymorphism (RHMP) method. The method clearly separated the isolates into two groups; all the northernDesmodium isolates formed one group and all theKennedya isolates from the south another. These sub-populations were themselves variable and theDesmodium population alone was more variable than that of the related turnip yellow mosaic tymovirus in the Kosciusko alpine area.

Turnip yellow mosaic virus variants produced from DNA clones encoding their genomes

SummaryFull-length dsDNA clones that encode the genomes of two Australian turnip yellow mosaic isolates, TYMV-BL and TYMV-CL have been constructed. These clones were transcribed to give 6.3 kb capped ssRNA which infects Chinese cabbages to give symptoms indistinguishable from those produced by the parental viruses. Extensions of up to 26 nucleotides at the 3′ end of the TYMV-BL clone delay infections, but virus particles isolated from these plants 4 weeks after inoculation contain RNA with the original TYMV-BL 3′ terminus. A 90 nucleotide-long portion of the virion protein gene of TYMV-BL was replaced by a synthetic 90-mer primer with 16 nucleotide changes to decrease the large cytosine content (34–42%) characteristic of tymovirus genomic RNA. No reversion of any of the mutated nucleotides to cytosine occurred during 7 passages in Chinese cabbage. Hybrids between the TYMV-BL and TYMV-CL clones were also constructed, by exchanging various portions of the genome. However, it was not possible to determine definitively which part of the viral genome is responsible for the more severe symptoms caused by TYMV-BL as the hybrids gave intermediate symptoms.

RNA hybrid mismatch polymorphisms in Australian populations of turnip yellow mosaic tymovirus

SummaryIn the Mt. Kosciusko alpine area of Australia there are three well-separated populations ofCardamine lilacina, an endemic sward-forming perennial brassica, and these are infected with turnip yellow mosaic tymovirus. The genetic variation in these viral populations has been assessed by an RNA hybrid mismatch polymorphism method. About 100 isolates were examined; the genomic RNA of each isolate was prepared from a shoot of a single wildC. lilacina plant. RNA hybrid mismatch polymorphisms (RHMPs) were assessed in six regions of the genomes using labelled negative-strand probes transcribed from selected portions of a cloned TYMV genome. The probed region at the 3′ end of the genome showed little variation and over 95% of the isolates gave the same pattern. However, other parts of the genome, including the 5′ non-coding region, were much more variable. There was no significant correlation between groupings based on the RHMP patterns, and the location from which the isolates were collected, nor with the symptom type or severity shown by their host plants. The patterns of variation suggested that all three populations of the virus are a single quasi-species; at most one tenth of the isolates gave similar RHMP patterns, those of the “master copy”.

RAPD analysis of genetic variation and dispersal of the moss Bryum pseudotriquetrum from Southern Victoria Land, Antarctica

Abstract The RAPD technique (Random Amplified Polymorphic DNA) was used to assess the level of genetic diversity in Bryum pseudotriquetrum from Southern Victoria Land, Antarctica. Isolates were collected from two transects, and from several other geographically distinct populations within 150 km of Ross Island. Moss growth in one transect, sampled down a small exposed meltstream channel at Cape Chocolate, was very sparse with no other moss colonies found within several hundred meters. Isolates from this transect showed low levels of genetic variation, with many moss clumps appearing identical; these were probably dispersed by water along the channel. In another transect analysed from Granite Harbour, the moss colonies were large, luxuriant and protected by boulders. These isolates showed considerably higher levels of genetic variability than the Cape Chocolate samples, and both within- and between-clump variation was observed. Samples from other sites showed varying levels of genetic diversity. It appears from these results that the degree of protection from the harsh Antarctic environment can influence not only the type of moss growth, but also the level of genetic diversity. Evidence is presented for both short-distance dispersal by water and long-distance dispersal by wind.

DNA sequencing and genetic diversity of the 18S-26S nuclear ribosomal internal transcribed spacers (ITS) in nine Antarctic moss species

We have sequenced the 18S–26S nuclear ribosomal DNA ITS region from the genome of nine different moss species from the Ross Sea region of Antarctica. This relatively quick and simple technique enables these species to be readily distinguished, facilitating their taxonomic identification. Only a single moss shoot is required, and for identification of these bryophytes it is only necessary to determine a few hundred nucleotides of the DNA sequence in a single sequencing reaction. Several previously unidentified Antarctic moss specimens were readily characterized by comparison with ITS sequences of known moss species. The relationships between species and locations previously detected by the RAPD (Random Amplified Polymorphic DNA) technique were confirmed by DNA sequencing, demonstrating that the two techniques can be complementary for molecular analysis of the ecology of mosses in Antarctica.