Mahmood S. Shivji

Global population genetic dynamics of a highly migratory, apex predator shark.

Knowledge of genetic connectivity dynamics in the worlds large‐bodied, highly migratory, apex predator sharks across their global ranges is limited. One such species, the tiger shark (Galeocerdo cuvier), occurs worldwide in warm temperate and tropical waters, uses remarkably diverse habitats (nearshore to pelagic) and possesses a generalist diet that can structure marine ecosystems through top‐down processes. We investigated the phylogeography and the global population structure of this exploited, phylogenetically enigmatic shark by using 10 nuclear microsatellites (n = 380) and sequences from the mitochondrial control region (CR, n = 340) and cytochrome oxidase I gene (n = 100). All three marker classes showed the genetic differentiation between tiger sharks from the western Atlantic and Indo‐Pacific ocean basins (microsatellite FST > 0.129; CR ΦST > 0.497), the presence of North vs. southwestern Atlantic differentiation and the isolation of tiger sharks sampled from Hawaii from other surveyed locations. Furthermore, mitochondrial DNA revealed high levels of intraocean basin matrilineal population structure, suggesting female philopatry and sex‐biased gene flow. Coalescent‐ and genetic distance‐based estimates of divergence from CR sequences were largely congruent (dcorr = 0.0015–0.0050), indicating a separation of Indo‐Pacific and western Atlantic tiger sharks <1 million years ago. Mitochondrial haplotype relationships suggested that the western South Atlantic Ocean was likely a historical connection for interocean basin linkages via the dispersal around South Africa. Together, the results reveal unexpectedly high levels of population structure in a highly migratory, behaviourally generalist, cosmopolitan ocean predator, calling for management and conservation on smaller‐than‐anticipated spatial scales.

Characterisation and monitoring of one of the world’s most valuable ecotourism animals, the southern stingray at Stingray City, Grand Cayman

Southern stingrays (Hypanus americanus) represent a multimillion dollar ecotourism operation in Grand Cayman, interacting with over a million visitors annually. Over 30 years of stingray provisioning by tour operators has provided a predictable aggregation at the Stingray City Sandbar (SCS). Despite potentially negative effects of provisioning and concerns about declining stingray numbers at SCS, there has never been a formal assessment of the aggregation. In the present study we analysed tagging data from 2002 to 2015 and established structured censuses monitoring the aggregation. The consistently female-dominated aggregation declined between 2008 and 2012, from >100 to <60 stingrays, but has increased since 2012, stabilising at ~90 stingrays. Female site fidelity was high, with ~20% of females resident for ≥10 years, compared with only 3 years for most males. Stingrays were also found to have growth rates similar to those in captivity. The results of the present study suggest the SCS aggregation is highly dependent on individuals arriving from the island-wide stingray population, susceptible to perturbation, and that successful management of activities at SCS will benefit from regular monitoring of the stingray aggregation. We chronicle the historical status of this well-known and economically valuable marine resource and provide suggestions applicable towards sustainable human–marine wildlife interactions for similar resources.

Transcriptome Derived Microsatellites Demonstrate Strong Genetic Differentiation in Pacific White Sharks

Recent advances in genome-scale sequencing technology have allowed the development of high resolution genetic markers for the study of nonmodel taxa. In particular, transcriptome sequencing has proven to be highly useful in generating genomic markers for use in population genetic studies, allowing for insight into species connectivity, as well as local adaptive processes as many transcriptome-derived markers are found within or associated with functional genes. Herein, we developed a set of 30 microsatellite markers from a heart transcriptome for the white shark (Carcharodon carcharias), a widely distributed and globally vulnerable marine predator. Using these markers as well as 10 published anonymous genomic microsatellite loci, we provide 1) the first nuclear genetic assessment of the cross-Pacific connectivity of white sharks, and 2) a comparison of the levels of inferred differentiation across microsatellite marker sets (i.e., transcriptome vs. anonymous) to assess their respective utility to elucidate the population genetic dynamics of white sharks. Significant (FST = 0.083, P = 0.05; G″ST = 0.200; P = 0.001) genetic differentiation was found between Southwestern Pacific (n = 19) and Northeastern Pacific (n = 20) white sharks, indicating restricted, cross Pacific gene flow in this species. Transcriptome-derived microsatellite marker sets identified much higher (up to 2×) levels of genetic differentiation than anonymous genomic markers, underscoring potential utility of transcriptome markers in identifying subtle population genetic differences within highly vagile, globally distributed marine species.Subject areas: Population structure and phylogeography; Conservation genetics and biodiversity.

Surfactant-associated bacteria in the near-surface layer of the ocean from in-situ DNA sampling and SAR imaging

Certain marine bacteria found in the near-surface layer of the ocean are expected to play an important role in the production and decay of surface active materials. Identifying a connection between marine bacteria and the production of natural surfactants may provide a better understanding of the global picture of biophysical processes at the boundary between the ocean and atmosphere, air-sea exchange of gases, and production of climate-active marine aerosols. Kurata et al. (2016) and Hamilton et al. (2015) have developed measurement methodology combining DNA sampling of sea surface microlayer with SAR satellite technology. Following Franklin et al. (2005) and Cunliffe et al. (2011), these authors used polycarbonate membrane filters in order to minimize potential contamination that may occur with other sampling techniques. A hydrophilic polycarbonate filter, attached to the sea surface by capillary forces, collected bacteria effectively from a 35–42 μm surface layer. A fly fishing technique was used in Kurata et al. (2016) and Hamilton et al. (2015) to ensure that the filter sat on the sea surface for a few seconds (away from the vessel and its wake in order to avoid these sources of disturbance to measurements of the microlayer). Samples from the water column at approximately 0.2 m depth were taken with a peristaltic pump for comparison with the sea surface results.