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Dive into the research topics where Makoto Nishimoto is active.

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Featured researches published by Makoto Nishimoto.


Colloids and Surfaces B: Biointerfaces | 2009

Interdigitation and vesicle-to-micelle transformation induced by a local anesthetic tetracaine in phospholipids bilayers

Koichi Takeda; Hiroko Okuno; Takashi Hata; Makoto Nishimoto; Hitoshi Matsuki; Shoji Kaneshina

The phase transitions of distearoyl- (DSPC), dipalmitoyl- (DPPC) and dimyristoyl-phosphatidylcholine (DMPC) bilayer membranes were observed by means of differential scanning calorimetry as a function of the concentration of a local anesthetic tetracaine hydrochloride (TC.HCl). The depression of both temperatures of the main- and pre-transition, which is accompanied by a decrease in enthalpy changes for both transitions, was observed initially by the addition of TC.HCl. Bilayer interdigitation, which is accompanied by an increase in enthalpy change for the main transition from the interdigitated gel phase to the liquid crystalline phase, was followed by disappearance of the pretransition. The TC.HCl concentration necessary for the bilayer interdigitation was found to be 10, 21 and 6 mmol kg(-1) for DSPC, DPPC and DMPC bilayers, respectively, which was not consistent with the order of acyl-chain length of lipids. Biphasic interactions for the interdigitation, that is, repulsive interaction between polar head groups and van der Waals attractive interaction between hydrophobic chains of lipids, were discussed. On the other hand, vesicle-to-micelle transformation, which is accompanied by a cooperative decrease in enthalpy change for the main transition, was observed at higher concentration of TC.HCl and was confirmed by the vesicle size determined by the dynamic light scattering. The longer the acyl-chain length of lipids, the higher the TC.HCl concentration necessary for the vesicle-to-micelle transformation.


Chemistry and Physics of Lipids | 2009

Interaction modes of long-chain fatty acids in dipalmitoylphosphatidylcholine bilayer membrane: contrast to mode of inhalation anesthetics

Makoto Nishimoto; Takashi Hata; Masaki Goto; Nobutake Tamai; Shoji Kaneshina; Hitoshi Matsuki; Issaku Ueda

The effects of long-chain fatty acids (four saturated and two unsaturated fatty acids, one derivative) on phase transitions of dipalmitoylphosphatidylcholine (DPPC) bilayer membranes were examined in the low concentration region, and the results were compared with those for an inhalation anesthetic. The effects of all fatty acids on the pre- and main-transition temperatures of the DPPC bilayer membrane appeared in the concentration range of microM order while that of the anesthetic appeared in the mM order. The appearance modes of these ligand actions were significantly different from one another. The three differential partition coefficients of the ligands between two phases of the DPPC bilayer membrane were evaluated by applying the thermodynamic equation to the variation of the phase-transition temperatures. The DPPC bilayer membranes showed the different receptivity for the ligands; the saturated fatty acids had an affinity for gel phase whereas unsaturated fatty acids and an anesthetic had an affinity for liquid-crystalline phase to the contrary. In particular, the receptivity for the ligands in the gel phase markedly changed depending on kinds of ligands. The interaction modes between the DPPC and fatty acid molecules in the gel phase were considered from the hexagonal lattice model. The disappearance compositions of the pretransition by the fatty acids coincided with the compositions at which the membrane is all covered by the units in each of which two fatty acids molecules are regularly distributed in the hexagonal lattice in a different way, and the distribution depended on the chain length and existence of a double bond for the fatty acids. The interpretation did not hold for the case of the anesthetic at all, which proved that a number of anesthetic molecules act the surface region of the bilayer membrane nonspecifically. The present study clearly implies that DPPC bilayer membranes have high ability to recognize kinds of ligand molecules and can discriminate among them with specific interaction by the membrane states.


Journal of Physics: Conference Series | 2010

Thermodynamic characterization of bilayer-nonbilayer phase transitions of phospholipid membranes

Hitoshi Matsuki; Makoto Nishimoto; Kaori Tada; Masaki Goto; Nobutake Tamai; Shoji Kaneshina

We determined thermodynamic properties of phase transitions between bilayer and nonbilayer for phosphatidylcholines with saturated hydrophobic chains (C18:0-PC, O-C18:0-PC) and phosphatidylethanolamines with unsaturated ones (C18:1(cis)-PE, C18:1(trans)-PE) by means of calorimetry under ambient pressure and optical measurements under high pressure. The thermodynamic quantities of the transitions between bilayer and nonbilayer were much smaller than those of the transition between bilayers (gel-liquid crystal or hydrated crystal-liquid crystal transition) for the corresponding phospholipids. Although the nonbilayer formations correspond to a dynamic transformation between lamellar structure and nonlamellar structure, we can say that the order of the lipid molecule in both structures may not appreciably change judging from the smaller thermodynamic quantities. A notable feature of the bilayer-nonbilayer transitions is the large pressure dependence of the transition temperature as compared with that of the bilayer-bilayer transitions. Comparing the enthalpy and volume changes of the bilayer-nonbilayer transitions with those of the bilayer-bilayer transitions, we concluded that the former transitions can be regarded as the volume-driven transitions for the reconstruction of molecular packing.


Annals of the New York Academy of Sciences | 2010

Pressure study on symmetric and asymmetric phospholipid bilayers: effect of vesicle size on Prodan fluorescence

Masaki Goto; Masataka Kusube; Makoto Nishimoto; Nobutake Tamai; Hitoshi Matsuki; Shoji Kaneshina

The bilayer phase behavior of symmetric and asymmetric phosphatidylcholines (PCs), 1,2‐diheptadecanoyl‐PC (C17PC), 1‐palmitoyl‐2‐stearoyl‐PC (PSPC), and 1‐stearoyl‐2‐palmitoyl‐PC (SPPC), with different vesicle sizes were investigated by a high‐pressure fluorescence method using the polarity‐sensitive fluorescent probe Prodan. The second derivative of fluorescence spectra for all the PCs of small‐sized vesicle showed four minima characteristic of four membrane states on the spectra irrespective of the acyl‐chain symmetry, whereas those of large‐sized vesicle had one more minimum originating from the most hydrophilic site at the membrane surface. These findings indicate that Prodan molecules can distribute into multiple sites in the bilayer and move around the head‐group region depending on the vesicle size. The behavior of the spectra in the SPPC bilayer suggested that the interdigitated gel phase had a less polar “pocket” formed by a space between uneven terminal methyl ends of the sn‐1 and sn‐2 chains. It turned out that the curvature of vesicles affects the distribution of the Prodan molecules in all phases, more particularly in the interdigitated gel phase.


Journal of Biochemistry | 2013

Possible role of inter-domain salt bridges in oligopeptidase B from Trypanosoma brucei: critical role of Glu172 of non-catalytic β-propeller domain in catalytic activity and Glu490 of catalytic domain in stability of OPB

Junki Fukumoto; Nor Ismaliza Mohd Ismail; Masaki Kubo; Keita Kinoshita; Masahiro Inoue; Keizo Yuasa; Makoto Nishimoto; Hitoshi Matsuki; Akihiko Tsuji

Oligopeptidase B (OPB) is a member of the prolyl oligopeptidase (POP) family of serine proteases. OPB in trypanosomes is an important virulence factor and potential pharmaceutical target. Characteristic structural features of POP family members include lack of a propeptide and presence of a β-propeller domain (PD), although the role of the β-PD has yet to be fully understood. In this work, residues Glu(172), Glu(490), Glu(524) and Arg(689) in Trypanosoma brucei OPB (Tb OPB), which are predicted to form inter-domain salt bridges, were substituted for Gln and Ala, respectively. These mutants were evaluated in terms of catalytic properties and stability. A negative effect on kcat/Km was obtained following mutation of Glu(172) or Arg(689). In contrast, the E490Q mutant exhibited markedly decreased thermal stability, although this mutation had less effect on catalytic properties compared to the E172Q and R689A mutants. Trypsin digestion showed that the boundary regions between the β-PD and catalytic domains (CDs) of the E490Q mutant are unfolded with heat treatment. These results indicated that Glu(490) in the CD plays a role in stabilization of Tb OPB, whereas Glu(172) in the β-PD is critical for the catalytic activity of Tb OPB.


Journal of Physics: Conference Series | 2010

Effect of pressure on interactions of anti-fluorescent probe monoclonal antibody with a ligand and inhibitors

Makoto Nishimoto; Masaki Goto; Nobutake Tamai; Hideaki Nagamune; Shoji Kaneshina; Hitoshi Matsuki

Interactions of anti-fluorescent probe monoclonal antibody (immunoglobulin G (IgG)-49) with a ligand (fluorescein (FL)) and three kinds of inhibitors (1-tetradecanol (C14OH), 1-tetradecanoic acid (C13COOH) and 5-aminofluorescein (5-FLNH2)) under high pressure were examined by methods of fluorescence spectroscopy. Pressure promoted the dissociation between FL and IgG-49 from the complex. The standard volume changes of the dissociation became negative, hence, the binding of FL to IgG-49 expands the volume of the complex. The volume expansion may be closely related to the large hydrophobicity around binding sites of FL in the IgG-49 molecule. Further, the standard volume changes of IgG-49 for the inhibitor binding, which were calculated from the Johnson-Eyring plots, became all negative. The volume change for 5-FLNH2 was smaller than those for C14OH and C13COOH. This means that the volume of IgG-49 shrinks by the addition of the inhibitors in contrast with the FL binding. The differences among inhibitors are attributable to the differences in interaction modes to IgG-49 among them.


Colloids and Surfaces B: Biointerfaces | 2010

Inhibition of anti-fluorescent probe monoclonal antibody by long-chain amphiphiles.

Makoto Nishimoto; Tohru Morimitsu; Nobutake Tamai; Shoji Kaneshina; Hideaki Nagamune; Hitoshi Matsuki

Inhibitions of amphiphiles with a long chain (alcohols with carbon number of 10, 12, 14, 16 and the corresponding fatty acids) on the antigen-antibody reaction between fluorescent probe (fluorescein (FL)) and anti-fluorescent probe monoclonal antibody (immunoglobulin G (IgG)-49) were investigated by fluorescence spectroscopy. The resulting inhibition modes were compared with those of specific inhibitors, 5- and 6-aminofluoresceins (5- and 6-FLNH(2)). In the presence of all inhibitors, the fluorescence quenching of FL as the result of inhibitor binding to IgG-49 was hindered in an inhibitor concentration-dependent manner. The values of IC(50) and Hill number for the inhibitors were determined from dose-response curves of the quenching inhibition. The IC(50) values of the alcohols were much more dependent on the chain length than those of the fatty acids although all the values were in orders of microM. The Hill numbers of both kinds of inhibitors became larger values than 1, but they had different values for a series of alcohols and fatty acids, respectively. By contrast, the IC(50) values of 5- and 6-FLNH(2) were in orders of nM and the Hill numbers became smaller values than 1. Since the Lineweaver-Burk plots produced an intersection point on the intercept of the X-axis for the long-chain inhibitors with carbon number of 14 while did that on the intercept of the Y-axis for 6-FLNH(2), respectively, we judged the inhibition modes of the former as non-competitive ones and those of the latter as a competitive one. Further, the effect of pressure on the inhibition by C(14)OH, C(13)COOH and 5-FLNH(2) was examined, and the standard volume changes of IgG-49 for the inhibitor binding were calculated from the Johnson-Eyring plots. The volume change for 5-FLNH(2) was smaller than those for C(14)OH and C(13)COOH although they became all negative. This suggests that the volume of IgG-49 shrinks by the addition of these inhibitors, and IgG-49 is not relevant to a model protein for the molecular mechanism of anesthesia.


High Pressure Research | 2010

Packing state in bilayer membranes of diacylphosphatidylcholines with varying acyl chain lengths under high pressures

Hitoshi Matsuki; Makoto Nishimoto; Kaori Tada; Masaki Goto; Nobutake Tamai; Shoji Kaneshina

The bilayer packing states of a series of diacylphosphatidylcholines (CnPC) containing linear saturated acyl chains were examined by a high-pressure fluorescence method. We revealed from the second derivatives of Prodan fluorescence spectra for all bilayer membranes that the Prodan molecules can be distributed into multiple sites in these bilayer membranes and move around the head-group region, depending on the phase state. The hydrophobicity of the PC molecules markedly affected the distribution quantities of the Prodan molecules between the gel and liquid crystalline phases. The distribution of the Prodan molecules into the gel phase decreased with the increasing acyl chain length while that into the liquid crystalline phase conversely increased. The present study suggests that Prodan can sensitively recognize the packing states and strengths in the bilayer membranes and becomes a good packing indicator.


Colloid and Polymer Science | 2009

A comparative study on specific and nonspecific interactions in bovine serum albumin: thermal and volume effects of halothane and palmitic acid

Makoto Nishimoto; Ukyo Komatsu; Nobutake Tamai; Michio Yamanaka; Shoji Kaneshina; Kenji Ogli; Hitoshi Matsuki


International Congress Series | 2005

Comparative study of specific and non-specific interactions between bio-macromolecules and ligands

Hitoshi Matsuki; Ukyo Komatsu; Makoto Nishimoto; Shoji Kaneshina; Kenji Ogli

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Masaki Goto

University of Tokushima

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Takashi Hata

University of Tokushima

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Ukyo Komatsu

University of Tokushima

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