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Dive into the research topics where Makoto Urata is active.

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Featured researches published by Makoto Urata.


Zoological Science | 2004

The Development of the Enteropneust Hemichordate Balanoglossus misakiensis Kuwano

Makoto Urata; Masaaki Yamaguchi

Abstract We describe development from fertilization to metamorphosis of the enteropneust hemichor-date Balanoglossus misakiensis. This is the first report to describe the complete development of an indirect-developing hemichordate under laboratory conditions. Mature adults were induced to spawn by shifting the temperature of seawater from 23 to 28°C. Eggs (200 μm diameter) were enclosed within a nonmucilaginous membrane, and dispersed readily in seawater. After artificial insemination, a fertilization envelope was elevated from the egg surface beneath the egg membrane; this was followed by the formation of the first and second polar bodies within the envelope. Zygotes cleaved at 20-min intervals to form blastulae, and gastrulation started 9 h after fertilization. Embryos hatched 1 day after fertilization to become typical feeding tornaria larvae. The larvae metamorphosed 7–10 days after fertilization without undergoing the first (Müller) or forth (Krohn) stage of indirect-developing hemichordate development. Larvae that were not fed failed to metamorphose. Juveniles completed adult body formation within a week of settling in sand at the bottom of the culture tube. We discuss heterochronical modifications of B. misakiensis development, and make the case for this species as a potential model organism for the investigation of indirect-developing hemichordates.


Zoological Science | 2007

Laboratory Culture of the Oriental Lancelet Branchiostoma belcheri

Kinya Yasui; Makoto Urata; Nobuo Yamaguchi; Hiroshi Ueda; Yasuhisa Henmi

Abstract To overcome difficulties in getting research materials of cephalochordate lancelets, which has severely hampered experimental studies of this animal, we have attempted to establish a culture system in the laboratory. Adult animals collected from the wild were maintained in 2.5-L plastic containers filled with natural seawater without sand substratum. They were fed daily with unicellular algae. About 25% of the animals collected in 2003, 2004, and 2005 developed gonads in our culture system. Some of the sexually mature animals collected in the breeding seasons in 2005 and 2006 spawned spontaneously in the plastic containers of this system. Broods obtained in 2005 were maintained longer than a year in a glass tank without sand substratum. The progeny born in the laboratory showed great individual variation in growth but metamorphosed normally, and some of them started to develop gonads around 10 months after fertilization. Our mass culture methods for both adults and their progeny made daily observation possible and allowed the constant spawning of animals collected from the wild, at least in the summer season. Our culture method saves labor in maintenance and is easily set up without any specific demands except for running seawater, though still required to better survival rate and spawning control. Lancelet populations maintained in the laboratory can promote studies on these animals across disciplines and especially contribute to elucidation of the evolutionary history of chordates.


Organisms Diversity & Evolution | 2015

Neurogenesis in directly and indirectly developing enteropneusts: of nets and cords

Sabrina Kaul-Strehlow; Makoto Urata; Takuya Minokawa; Thomas Stach; Andreas Wanninger

Concerning the evolution of deuterostomes, enteropneusts (acorn worms) occupy a pivotal role as they share some characteristics with chordates (e.g., tunicates and vertebrates) but are also closely related to echinoderms (e.g., sea urchin). The nervous system in particular can be a highly informative organ system for evolutionary inferences, and advances in fluorescent microscopy have revealed overwhelming data sets on neurogenesis in various clades. However, immunocytochemical descriptions of neurogenesis of juvenile enteropneusts are particularly scarce, impeding the reconstruction of nervous system evolution in this group. We followed morphogenesis of the nervous system in two enteropneust species, one with direct (Saccoglossus kowalevskii) and the other with indirect development (Balanoglossus misakiensis), using an antibody against serotonin and electron microscopy. We found that all serotonin-like immunoreactive (LIR) neurons in both species are bipolar ciliary neurons that are intercalated between other epidermal cells. Unlike the tornaria larva of B. misakiensis, the embryonic nervous system of S. kowalevskii lacks serotonin-LIR neurons in the apical region as well as an opisthotroch neurite ring. Comparative analysis of both species shows that the projections of the serotonin-LIR somata initially form a basiepidermal plexus throughout the body that disappears within the trunk region soon after settlement before the concentrated dorsal and ventral neurite bundles emerge. Our data reveal a highly conserved mode of neurogenesis in enteropneusts that is independent of the developing mode and is inferred to be a common feature for Enteropneusta. Moreover, all detected serotonin-LIR neurons are presumably receptor cells, and the absence of serotonin-LIR interneurons from the enteropneust nervous system, which are otherwise common in various bilaterian central nervous systems, is interpreted as a loss that might have occurred already in the last common ancestor of Ambulacraria.


Zoological Science | 2012

Biology of the Swimming Acorn Worm Glandiceps hacksi from the Seto Inland Sea of Japan

Makoto Urata; Sadaharu Iwasaki; Susumu Ohtsuka

The enteropneust hemichordate Glandiceps hacksi inhabits the muddy bottoms of the intertidal to subtidal zones of Koguno-shima Island, located in the central part of the Seto Inland Sea of Japan. Monthly collections from October 2005 to September 2007 revealed that their spawning occurs once a year, in the latter half of May. Parameters such as density and sex ratio, as well as the type of sediment, were also examined. Worm behavior and type of burrows revealed that G. hacksi are infaunal burrowers. Autotomy and regeneration of their posterior regions, and swimming behavior were also observed in an aquarium environment. This is the first comprehensive study on the biology of G. hacksi, the swimming acorn worm.


Zoological Science | 2007

Larval Development of the Oriental Lancelet, Branchiostoma belcheri, in Laboratory Mass Culture

Makoto Urata; Nobuo Yamaguchi; Yasuhisa Henmi; Kinya Yasui

Abstract We are successfully maintaining a laboratory colony of the lancelet Branchiostoma belcheri bred in the laboratory. Based on living individuals in this mass culture, morphological characteristics from the seven-day larval to benthic juvenile stages have been studied. Most striking was that later larval development of B. belcheri showed great individual variation even in a rather stable culture environment. Metamorphosis first occurred on 60 days post fertilization (dpf) and was continuously observed throughout the present study up to 100 dpf. Morphological traits such as the number of primary gill slits and body size at the start of metamorphosis are apparently affected by culture condition. Body size measured in the largest individuals showed nearly linear growth at 0.087 mm/day. The variability found in larval development calls for caution when developmental stages and chronological ages are compared between populations. However, the developmental flexibility of this animal also raises the possibility that growth and sexual maturation could be controlled artificially in captivity.


BMC Evolutionary Biology | 2016

The evolutionally-conserved function of group B1 Sox family members confers the unique role of Sox2 in mouse ES cells

Hitoshi Niwa; Akira Nakamura; Makoto Urata; Maki Shirae-Kurabayashi; Shigehiro Kuraku; Steven Russell; Satoshi Ohtsuka

BackgroundIn mouse ES cells, the function of Sox2 is essential for the maintenance of pluripotency. Since the Sox-family of transcription factors are well conserved in the animal kingdom, addressing the evolutionary origin of Sox2 function in pluripotent stem cells is intriguing from the perspective of understanding the origin of pluripotency.ResultsHere we approach this question using a functional complementation assay in inducible Sox2-null ES cells. Assaying mouse Sox proteins from different Groups, we found that only Group B1 and Group G proteins were able to support pluripotency. Interestingly, invertebrate homologs of mammalian Group B1 Sox proteins were able to replace the pluripotency-associated function of mouse Sox2. Moreover, the mouse ES cells rescued by the Drosophila SoxNeuro protein are able to contribute to chimeric embryos.ConclusionsThese data indicate that the function of mouse Sox2 supporting pluripotency is based on an evolutionally conserved activity of the Group B1 Sox family. Since pluripotent stem cell population in developmental process could be regarded as the evolutional novelty in vertebrates, it could be regarded as a co-optional use of their evolutionally conserved function.


Scientific Reports | 2017

Neuronal patterning of the tubular collar cord is highly conserved among enteropneusts but dissimilar to the chordate neural tube

Sabrina Kaul-Strehlow; Makoto Urata; Daniela Praher; Andreas Wanninger

A tubular nervous system is present in the deuterostome groups Chordata (cephalochordates, tunicates, vertebrates) and in the non-chordate Enteropneusta. However, the worm-shaped enteropneusts possess a less complex nervous system featuring only a short hollow neural tube, whereby homology to its chordate counterpart remains elusive. Since the majority of data on enteropneusts stem from the harrimaniid Saccoglossus kowalevskii, putative interspecific variations remain undetected resulting in an unreliable ground pattern that impedes homology assessments. In order to complement the missing data from another enteropneust family, we investigated expression of key neuronal patterning genes in the ptychoderid Balanoglossus misakiensis. The collar cord of B. misakiensis shows anterior Six3/6 and posterior Otx + Engrailed expression, in a region corresponding to the chordate brain. Neuronal Nk2.1/Nk2.2 expression is absent. Interestingly, we found median Dlx and lateral Pax6 expression domains, i.e., a condition that is reversed compared to chordates. Comparative analyses reveal that adult nervous system patterning is highly conserved among the enteropneust families Harrimaniidae, Spengelidae and Ptychoderidae. BmiDlx and BmiPax6 have no corresponding expression domains in the chordate brain, which may be indicative of independent acquisition of a tubular nervous system in Enteropneusta and Chordata.


Comparative Biochemistry and Physiology A-molecular & Integrative Physiology | 2016

Low-intensity pulsed ultrasound induces apoptosis in osteoclasts: Fish scales are a suitable model for the analysis of bone metabolism by ultrasound.

Nobuo Suzuki; Taizo Hanmoto; Sachiko Yano; Yukihiro Furusawa; Mika Ikegame; Yoshiaki Tabuchi; Takashi Kondo; Kei-ichiro Kitamura; Masato Endo; Toshio Yamamoto; Toshio Sekiguchi; Makoto Urata; Yuko Mikuni-Takagaki; Atsuhiko Hattori

Using fish scales in which osteoclasts and osteoblasts coexist on the calcified bone matrix, we examined the effects of low-intensity pulsed ultrasound (LIPUS) on both osteoclasts and osteoblasts. At 3h of incubation after LIPUS treatment, osteoclastic markers such as tartrate-resistant acid phosphatase (TRAP) and cathepsin K mRNA expressions decreased significantly while mRNA expressions of osteoblastic markers, osteocalcin, distal-less homeobox 5, runt-related transcription factor 2a, and runt-related transcription factor 2b, increased significantly. At 6 and 18h of incubation, however, both osteoclastic and osteoblastic marker mRNA expression did not change at least present conditions. Using GeneChip analysis of zebrafish scales treated with LIPUS, we found that cell death-related genes were upregulated with LIPUS treatment. Real-time PCR analysis indicated that the expression of apoptosis-related genes also increased significantly. To confirm the involvement of apoptosis in osteoclasts with LIPUS, osteoclasts were induced by autotransplanting scales in goldfish. Thereafter, the DNA fragmentation associated with apoptosis was detected in osteoclasts using the TUNEL (TdT-mediated dUTP nick end labeling) method. The multi-nuclei of TRAP-stained osteoclasts in the scales were labeled with TUNEL. TUNEL staining showed that the number of apoptotic osteoclasts in goldfish scales was significantly elevated by treatment with LIPUS at 3h of incubation. Thus, we are the first to demonstrate that LIPUS directly functions to osteoclasts and to conclude that LIPUS directly causes apoptosis in osteoclasts shortly after exposure.


Evolution & Development | 2014

Development of the swimming acorn worm Glandiceps hacksi: similarity to holothuroids.

Makoto Urata; Sadaharu Iwasaki; Susumu Ohtsuka; Masaaki Yamaguchi

Spawnings of Glandiceps hacksi (Hemichordata: Enteropneusta) were stimulated in the laboratory by a brief increase in temperature, and the development from fertilization through metamorphosis is described for the first time for a member of the family Spengelidae. When fertilized, the spawned female gametes, which are primary oocytes, rapidly raise a fertilization membrane and undergo two maturation divisions. Holoblastic, radial cleavage produces a blastula; a gastrula then forms by invagination from the vegetal pole, and the blastopore closes soon thereafter. In previously described enteropneust embryos, the archenteron buds off the protocoel before the latter connects to the exterior via the proboscis pore. By contrast, in G. hacksi the archenteron precociously connects with the exterior before the protocoel forms. Soon thereafter, the embryo becomes uniformly ciliated and then hatches from the fertilization envelope at approximately 32 h (15°C culture temperature). At day 3 of development, the protocoel separates from the gut, which establishes a mouth opening to the exterior; by this time, the gut has differentiated into an esophagus, a stomach, and an intestine that opens posteriorly as an anus. The larva grows to form a tornaria with distinctive pigment patches along its ciliary bands.


Development Genes and Evolution | 2009

The Hox8 of the hemichordate Balanoglossus misakiensis

Makoto Urata; Jun Tsuchimoto; Kinya Yasui; Masaaki Yamaguchi

Deuterostomes comprise a monophyletic group of animals that include chordates, xenoturbellids, and the Ambulacraria, which consists of echinoderms and hemichordates. The ancestral chordate probably had 14 Hox genes aligned linearly along the chromosome, with the posterior six genes showing an independent duplication compared to protostomes. In contrast, ambulacrarians are characterized by a duplication of the posterior Hox genes, resulting in three genes known as Hox11/13a, Hox11/13b, and Hox11/13c. Here, we isolated 12 Hox genes from the hemichordate Balanoglossus misakiensis and found an extra Hox gene that has not been reported in hemichordates. The extra B. misakiensis gene was suggested to be Hox8 from paralog-characteristic residues in its hexapepetide motif and homeodomain and a comparison with Strongylocentrotus purpuratus Hox genes. Our data suggest that the ancestor of echinoderms and hemichordates may have had a full complement of 12 Hox genes.

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Atsuhiko Hattori

Tokyo Medical and Dental University

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Masato Endo

Tokyo University of Marine Science and Technology

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