Malcolm McLeod

Best management practices to mitigate faecal contamination by livestock of New Zealand waters

Abstract This paper summarises findings from the Pathogen Transmission Routes Research Program, describing pathogen pathways from farm animals to water bodies and measures that can reduce or prevent this transfer. Significant faecal contamination arises through the deposition of faeces by grazing animals directly into waterways in New Zealand. Bridging of streams intersected by farm raceways is an appropriate mitigation measure to prevent direct deposition during herd crossings, whilst fencing stream banks will prevent access from pasture into waterways by cattle that are characteristically attracted to water. Riparian buffer strips not only prevent cattle access to waterways, they also entrap microbes from cattle and other animals being washed down‐slope towards the stream in surface runoff. Microbial water quality improvements can be realised by fencing stock from ephemeral streams, wetlands, seeps, and riparian paddocks that are prone to saturation. Soil type is a key factor in the transfer of faecal microbes to waterways. The avoidance of, or a reduction in, grazing and irrigation upon poorly drained soils characterised by high bypass flow and/or the generation of surface runoff, are expected to improve microbial water quality. Dairyshed wastewater should be irrigated onto land only when the water storage capacity of the soil will not be exceeded. This “deferred irrigation” can markedly reduce pollutant transfer to waterways, particularly that via subsurface drains and groundwater. Advanced pond systems provide excellent effluent quality and have particular application where soil type and/or climate are unfavourable for irrigation. Research needs are indicated to reduce faecal contamination of waters by livestock.

Microbial and chemical tracer movement through two Southland soils, New Zealand

There has been a recent, rapid increase in both land application of dairy shed effluent in Southland, New Zealand, and the microbial load in ground and surface waters. We investigated the fate of faecal coliforms, a host-specific Salmonella bacteriophage, and a non-reactive chemical tracer (Br–), when applied to large intact lysimeter soil cores (500 mm diam. by 500 mm high), to determine the pattern of microbial transport through typical Southland soils. The soils were a poorly drained Fragic Perch-gley Pallic Soil, and a well-drained Typic Firm Brown Soil. A depth of 25 mm of dairy shed effluent containing faecal coliforms and spiked with bacteriophage and Br– was applied to the soil at a rate of 5 mm/h followed by ~1 pore volume of simulated rainfall applied at 5 mm/h. Resulting leachates, collected continuously over ~1 pore volume, were analysed for the microbial and bromide tracers. The microbial tracers moved rapidly through both soils, peaking early in the leachate at ~0.15 pore volume and then tailing off in a pattern indicative of bypass flow. Bromide moved more uniformly through the soils but peaked at ~0.5–0.8 pore volume. The microbial flow pattern observed indicates that the structure in these soils makes them vulnerable to leaching of microbes into local surface and ground water. The large difference between the rate of microbial and chemical tracer transport indicates chemical tracers should only be used with caution to model microbial transport parameters.

Distribution of Glacial Deposits, Soils, and Permafrost in Taylor Valley, Antarctica

ABSTRACT We provide a map of lower and central Taylor Valley, Antarctica, that shows deposits from Taylor Glacier, local alpine glaciers, and grounded ice in the Ross Embayment. From our electronic database, which includes 153 sites from the coast 50 km upvalley to Pearse Valley, we show the distribution of permafrost type and soil subgroups according to Soil Taxonomy. Soils in eastern Taylor Valley are of late Pleistocene age, cryoturbated due to the presence of ground ice or ice-cemented permafrost within 70 cm of the surface, and classified as Glacic and Typic Haploturbels. In central Taylor Valley, soils are dominantly Typic Anhyorthels of mid-Pleistocene age that have dry-frozen permafrost within the upper 70 cm. Salt-enriched soils (Salic Anhyorthels and Petrosalic Anhyorthels) are of limited extent in Taylor Valley and occur primarily on drifts of early Pleistocene and Pliocene age. Soils are less developed in Taylor Valley than in nearby Wright Valley, because of lesser salt input from atmospheric deposition and salt weathering. Ice-cemented permafrost is ubiquitous on Ross Sea, pre–Ross Sea, and Bonney drifts that occur within 28 km of the McMurdo coast. In contrast, dry-frozen permafrost is prevalent on older (≥115 ky) surfaces to the west.

Attenuation of effluent‐derived faecal microbes in grass buffer strips

Abstract A series of field experiments assessed the ability of sloping (8°) 5‐m‐long by 2‐m‐wide grass buffer strips to trap the faecal microbes Escherichia coli and Campylobacter. The microbes, applied within dairy‐farm effluent, were washed into the strips by surface runoff generated at rates of 4–13 litres/min using a water sprinkler system. The effluent and surface and subsurface outflows at the lower end of each plot were sampled for microbial analysis. Flow rate influenced the timing of peak microbial concentration in outflow and the recovery of both microbes. Under high flow, recovery rates varied from 15–100%, and hence entrapment was often minimal. Under the slowest rate of water application, entrapment was much greater (≥95%), at least over the 40 min of water application. During large runoff events, and where preferential flowpaths occur, buffer strips need to exceed 5 m in length in order to markedly reduce the delivery of faecal microbes to waterways. Of those microbes trapped in the grass strips under fast flow rates, some were remobilised and washed out following a subsequent runoff event, 5 days later. On occasion, a considerable volume of flow was observed to bypass beneath the subsurface collecting troughs, probably reducing the effectiveness of the buffer strips.

Regionalizing Potential for Microbial Bypass Flow through New Zealand Soils

Microbial breakthrough curves of 12 soils, generated by the application of dairy shed effluent followed by continuous artificial rainfall for one pore volume at 5 mm h(-1) onto large undisturbed soil cores, have been ranked as high, medium, or low potential for microbial bypass flow. The ranking is based on the position of the peak in the breakthrough curve. Knowledge of soil properties that affect microbial transport through soil gained from the microbial breakthrough curves was linked to soil classes, or to their accessory properties, of the New Zealand Soil Classification. Spatial depiction of the ratings has been achieved via the national 1:50,000 scale soil map. Soils with a drainage impediment or those with well developed soil structure have a high potential for microbial bypass flow, whereas soils from tephra and Recent Soils with less developed, porous, soil structure have a low potential for microbial bypass flow. The risk rankings should be considered as maxima because management may change some rankings.

Subsidence Rates of Drained Agricultural Peatlands in New Zealand and the Relationship with Time since Drainage

The drainage and conversion of peatlands to productive agro-ecosystems leads to ongoing surface subsidence because of densification (shrinkage and consolidation) and oxidation of the peat substrate. Knowing the ra0te of this surface subsidence is important for future land-use planning, carbon accounting, and economic analysis of drainage and pumping costs. We measured subsidence rates over the past decade at 119 sites across three large, agriculturally managed peatlands in the Waikato region, New Zealand. The average contemporary (2000s-2012) subsidence rate for Waikato peatlands was 19 ± 2 mm yr (± SE) and was significantly less ( = 0.01) than the historic rate of 26 ± 1 mm yr between the 1920s and 2000s. A reduction in the rate of subsidence through time was attributed to the transition from rapid initial consolidation and shrinkage to slower, long-term, ongoing oxidation. These subsidence rates agree well with a literature synthesis of temperate zone subsidence rates reported for similar lengths of time since drainage. A strong nonlinear relationship was found between temperate zone subsidence rates and time since initial peatland drainage: Subsidence (mm yr) = 226 × (years since drained) ( = 0.88). This relationship suggests that time since drainage exerts strong control over the rate of peatland subsidence and that ongoing peatland subsidence rates can be predicted to gradually decline with time in the absence of major land disturbance.

Microbial and chemical tracer movement through Granular, Ultic, and Recent Soils

Abstract The ability of New Zealand soils to renovate dairy‐shed effluent following application to land is being evaluated. We investigated the pattern of transport of faecal coliforms, a host‐specific Salmonella bacteriophage and a non‐reactive chemical tracer (Br–), when applied to large, intact lysimeter soil cores (460 mm dia. × 520–700 mm high) of three contrasting soils. The soils were imperfectly drained Ultic and Granular Soils and a well‐drained Recent Soil. A depth of 25 mm of dairy‐shed effluent containing faecal coliforms and spiked with bacteriophage and Br− was applied to the soil at a rate of 5 mm h−1 followed by up to 1 pore volume of simulated rainfall applied at 5 mm h−1. This application rate is generally much slower than the soils saturated hydraulic conductivity except in the Ultic Soil where saturated hydraulic conductivity is slower. Resulting leachates, collected continuously, were analysed for the microbial and bromide tracers. The phage tracer moved rapidly through all soils, peaking early in the leachates and then tailing off in a pattern indicative of bypass flow. Faecal coliforms also moved rapidly through the Ultic and Granular Soils but numbers were much lower or not detectable in leachate from the Recent Soil. In contrast, bromide moved uniformly through Granular and Recent Soils but peaked early at about 0.5–0.8 pore volume. The microbial data suggest the soil structure in the Ultic and Granular Soils makes them vulnerable to leaching of microbes into shallow water bodies.

Soils of western Wright Valley, Antarctica

Abstract Western Wright Valley, from Wright Upper Glacier to the western end of the Dais, can be divided into three broad geomorphic regions: the elevated Labyrinth, the narrow Dais which is connected to the Labyrinth, and the North and South forks which are bifurcated by the Dais. Soil associations of Typic Haplorthels/Haploturbels with ice-cemented permafrost at < 70cm are most common in each of these geomorphic regions. Amongst the Haplo Great Groups are patches of Salic and Typic Anhyorthels with ice-cemented permafrost at > 70 cm. They are developed in situ in strongly weathered drift with very low surface boulder frequency and occur on the upper erosion surface of the Labyrinth and on the Dais. Typic Anhyorthels also occur at lower elevation on sinuous and patchy Wright Upper III drift within the forks. Salic Aquorthels exist only in the South Fork marginal to Don Juan Pond, whereas Salic Haplorthels occur in low areas of both South and North forks where any water table is> 50 cm. Most soils within the study area have an alkaline pH dominated by Na+ and Cl- ions. The low salt accumulation within Haplorthels/Haploturbels may be due to limited depth of soil development and possibly leaching.

Soil type influences the leaching of microbial indicators under natural rainfall following application of dairy shed effluent

The ability of soil to function as a barrier between microbial pathogens in wastes and groundwater following application of animal wastes is dependent on soil structure. We irrigated soil lysimeters with dairy shed effluent at intervals of 3–4 months and monitored microbial indicators (somatic coliphage, faecal enterococci, Escherichia coli) in soil core leachates for 1 year. The lysimeters were maintained in a lysimeter facility under natural soil temperature and moisture regimes. Microbial indicators were rapidly transported to depth in well-structured Netherton clay loam soil. Peak concentrations of E. coli and somatic coliphage were detected immediately following dairy shed effluent application to Netherton clay loam soil, and E. coli continued to leach from the soil following rainfall. In contrast, microbial indicators were rarely detected in leachates from fine-structured Manawatu sandy loam soil. Potential for leaching was dependent on soil moisture conditions in Manawatu soil but not Netherton soil, where leaching occurred regardless. Dye studies confirmed that E. coli can be transported to depth by flow through continuous macropores in Netherton soils. However, in the main E. coli was retained in topsoil of Netherton and Manawatu soil.

Microbial biomass and community structure changes along a soil development chronosequence near Lake Wellman, southern Victoria Land

Abstract Four pedons on each of four drift sheets in the Lake Wellman area of the Darwin Mountains were sampled for chemical and microbial analyses. The four drifts, Hatherton, Britannia, Danum, and Isca, ranged from early Holocene (10 ka) to mid-Quaternary (c. 900 ka). The soil properties of weathering stage, salt stage, and depths of staining, visible salts, ghosts, and coherence increase with drift age. The landforms contain primarily high-centred polygons with windblown snow in the troughs. The soils are dominantly complexes of Typic Haplorthels and Typic Haploturbels. The soils were dry and alkaline with low levels of organic carbon, nitrogen and phosphorus. Electrical conductivity was high accompanied by high levels of water soluble anions and cations (especially calcium and sulphate in older soils). Soil microbial biomass, measured as phospholipid fatty acids, and numbers of culturable heterotrophic microbes, were low, with highest levels detected in less developed soils from the Hatherton drift. The microbial community structure of the Hatherton soil also differed from that of the Britannia, Danum and Isca soils. Ordination revealed the soil microbial community structure was influenced by soil development and organic carbon.