Marcel Schwieder

The EnMAP-Box—A Toolbox and Application Programming Interface for EnMAP Data Processing

The EnMAP-Box is a toolbox that is developed for the processing and analysis of data acquired by the German spaceborne imaging spectrometer EnMAP (Environmental Mapping and Analysis Program). It is developed with two aims in mind in order to guarantee full usage of future EnMAP data, i.e., (1) extending the EnMAP user community and (2) providing access to recent approaches for imaging spectroscopy data processing. The software is freely available and offers a range of tools and applications for the processing of spectral imagery, including classical processing tools for imaging spectroscopy data as well as powerful machine learning approaches or interfaces for the integration of methods available in scripting languages. A special developer version includes the full open source code, an application programming interface and an application wizard for easy integration and documentation of new developments. This paper gives an overview of the EnMAP-Box for users and developers, explains typical workflows along an application example and exemplifies the concept for making it a frequently used and constantly extended platform for imaging spectroscopy applications.

Estimating Fractional Shrub Cover Using Simulated EnMAP Data: A Comparison of Three Machine Learning Regression Techniques

Anthropogenic interventions in natural and semi-natural ecosystems often lead to substantial changes in their functioning and may ultimately threaten ecosystem service provision. It is, therefore, necessary to monitor these changes in order to understand their impacts and to support management decisions that help ensuring sustainability. Remote sensing has proven to be a valuable tool for these purposes, and especially hyperspectral sensors are expected to provide valuable data for quantitative characterization of land change processes. In this study, simulated EnMAP data were used for mapping shrub cover fractions along a gradient of shrub encroachment, in a study region in southern Portugal. We compared three machine learning regression techniques: Support Vector Regression (SVR); Random Forest Regression (RF); and Partial Least Squares Regression (PLSR). Additionally, we compared the influence of training sample size on the prediction performance. All techniques showed reasonably good results when trained with large samples, while SVR always outperformed the other algorithms. The best model was applied to produce a fractional shrub cover map for the whole study area. The predicted patterns revealed a gradient of shrub cover between regions affected by special agricultural management schemes for nature protection and areas without land use incentives. Our results highlight the value of EnMAP data in combination with machine learning regression techniques for monitoring gradual land change processes.

Using Class Probabilities to Map Gradual Transitions in Shrub Vegetation from Simulated EnMAP Data

Monitoring natural ecosystems and ecosystem transitions is crucial for a better understanding of land change processes. By providing synoptic views in space and time, remote sensing data have proven to be valuable sources for such purposes. With the forthcoming Environmental Mapping and Analysis Program (EnMAP), frequent and area-wide mapping of natural environments by means of high quality hyperspectral data becomes possible. However, the amplified spectral mixing due to the sensor’s ground sampling distance of 30 m on the one hand and the patterns of natural landscapes in the form of gradual transitions between different land cover types on the other require special attention. Based on simulated EnMAP data, this study focuses on mapping shrub vegetation along a landscape gradient of shrub encroachment in a semi-arid, natural environment in Portugal. We demonstrate how probability outputs from a support vector classification (SVC) model can be used to extend a hard classification by information on shrub cover fractions. This results in a more realistic representation of gradual transitions in shrub vegetation maps. We suggest a new, adapted approach for SVC parameter selection: During the grid search, parameter pairs are evaluated with regard to the prediction of synthetically mixed test data, representing shrub to non-shrub transitions, instead of the hard classification of original, discrete test data. Validation with an unbiased, equalized random sampling shows that the resulting shrub-class probabilities from adapted SVC more accurately represent shrub cover fractions (mean absolute error/root mean squared error of 16.3%/23.2%) compared to standard SVC (17.1%/29.5%). Simultaneously, the discrete classification output was considerably improved by incorporating synthetic mixtures into parameter selection (averaged F1 accuracies increased from 72.4% to 81.3%). Based on our findings, the integration of synthetic mixtures into SVC parameterization allows the use of SVC for sub-pixel cover fraction estimation and, this way, can be recommended for deriving improved qualitative and quantitative descriptions of gradual transitions in shrub vegetation. The approach is therefore of high relevance for mapping natural ecosystems from future EnMAP data.

Monitoring Natural Ecosystem and Ecological Gradients: Perspectives with EnMAP

In times of global environmental change, the sustainability of human–environment systems is only possible through a better understanding of ecosystem processes. An assessment of anthropogenic environmental impacts depends upon monitoring natural ecosystems. These systems are intrinsically complex and dynamic, and are characterized by ecological gradients. Remote sensing data repeatedly collected in a systematic manner are suitable for describing such gradual changes over time and landscape gradients, e.g., through information on the vegetation’s phenology. Specifically, imaging spectroscopy is capable of describing ecosystem processes, such as primary productivity or leaf water content of vegetation. Future spaceborne imaging spectroscopy missions like the Environmental Mapping and Analysis Program (EnMAP) will repeatedly acquire high-quality data of the Earth’s surface, and will thus be extremely useful for describing natural ecosystems and the services they provide. In this conceptual paper, we present some of the preparatory research of the EnMAP Scientific Advisory Group (EnSAG) on natural ecosystems and ecosystem transitions. Through two case studies we illustrate the usage of spectral indices derived from multi-date imaging spectroscopy data at EnMAP scale, for mapping vegetation gradients. We thus demonstrate the benefit of future EnMAP data for monitoring ecological gradients and natural ecosystems.

Mapping beta diversity from space: sparse Generalised Dissimilarity Modelling (SGDM) for analysing high-dimensional data

Summary 1. Spatial patterns of community composition turnover (beta diversity) may be mapped through generalised dissimilarity modelling (GDM). While remote sensing data are adequate to describe these patterns, the often high-dimensional nature of these data poses some analytical challenges, potentially resulting in loss of generality. This may hinder the use of such data for mapping and monitoring beta-diversity patterns. 2. This study presents Sparse Generalised Dissimilarity Modelling (SGDM), a methodological framework designed to improve the use of high-dimensional data to predict community turnover with GDM. SGDM consists of a two-stage approach, by first transforming the environmental data with a sparse canonical correlation analysis (SCCA), aimed at dealing with high-dimensional data sets, and secondly fitting the transformed data with GDM. The SCCA penalisation parameters are chosen according to a grid search procedure in order to optimise the predictive performance of a GDM fit on the resulting components. The proposed method was illustrated on a case study with a clear environmental gradient of shrub encroachment following cropland abandonment, and subsequent turnover in the bird communities. Bird community data, collected on 115 plots located along the described gradient, were used to fit composition dissimilarity as a function of several remote sensing data sets, including a time series of Landsat data as well as simulated EnMAP hyperspectral data. 3. The proposed approach always outperformed GDM models when fit on high-dimensional data sets. Its usage on low-dimensional data was not consistently advantageous. Models using high-dimensional data, on the other hand, always outperformed those using low-dimensional data, such as single-date multispectral imagery. 4. This approach improved the direct use of high-dimensional remote sensing data, such as time-series or hyperspectral imagery, for community dissimilarity modelling, resulting in better performing models. The good performance of models using high-dimensional data sets further highlights the relevance of dense time series and data coming from new and forthcoming satellite sensors for ecological applications such as mapping species beta diversity.