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Dive into the research topics where Marcus E. Farmer is active.

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Featured researches published by Marcus E. Farmer.


Angewandte Chemie | 2016

A Simple and Versatile Amide Directing Group for C-H Functionalizations.

Ru-Yi Zhu; Marcus E. Farmer; Yan-Qiao Chen; Jin-Quan Yu

Achieving selective C-H activation at a single and strategic site in the presence of multiple C-H bonds can provide a powerful and generally useful retrosynthetic disconnection. In this context, a directing group serves as a compass to guide the transition metal to C-H bonds by using distance and geometry as powerful recognition parameters to distinguish between proximal and distal C-H bonds. However, the installation and removal of directing groups is a practical drawback. To improve the utility of this approach, one can seek solutions in three directions: 1) Simplifying the directing group, 2) using common functional groups or protecting groups as directing groups, and 3) attaching the directing group to substrates via a transient covalent bond to render the directing group catalytic. This Review describes the rational development of an extremely simple and yet broadly applicable directing group for Pd(II) , Rh(III) , and Ru(II) catalysts, namely the N-methoxy amide (CONHOMe) moiety. Through collective efforts in the community, a wide range of C-H activation transformations using this type of simple directing group have been developed.


Journal of the American Chemical Society | 2016

Ligand-Promoted Meta-C–H Arylation of Anilines, Phenols, and Heterocycles

Peng Wang; Marcus E. Farmer; Xing Huo; Pankaj Jain; Peng-Xiang Shen; Mette Ishoey; James E. Bradner; Steven R. Wisniewski; Martin D. Eastgate; Jin-Quan Yu

Here we report the development of a versatile 3-acetylamino-2-hydroxypyridine class of ligands that promote meta-C-H arylation of anilines, heterocyclic aromatic amines, phenols, and 2-benzyl heterocycles using norbornene as a transient mediator. More than 120 examples are presented, demonstrating this ligand scaffold enables a wide substrate and coupling partner scope. Meta-C-H arylation with heterocyclic aryl iodides as coupling partners is also realized for the first time using this ligand. The utility for this transformation for drug discovery is showcased by allowing the meta-C-H arylation of a lenalidomide derivative. The first steps toward a silver-free protocol for this reaction are also demonstrated.


Journal of the American Chemical Society | 2016

Ligand-Promoted meta-C–H Amination and Alkynylation

Peng Wang; Gen‐Cheng Li; Pankaj Jain; Marcus E. Farmer; Jian He; Peng-Xiang Shen; Jin-Quan Yu

Using a modified norbornene (methyl bicyclo[2.2.1]hept-2-ene-2-carboxylate) as a transient mediator, meta-C-H amination and meta-C-H alkynylation of aniline and phenol substrates have been developed for the first time. Both the identification of a monoprotected 3-amino-2-hydroxypyridine/pyridone-type ligand and the use of a modified norbornene as a mediator are crucial for the realization of these two unprecedented meta-C-H transformations. A variety of substrates are compatible with both meta-C-H amination and meta-C-H alkynylation. Amination and alkynylation of heterocyclic substrates including indole, indoline, and indazole afford the desired products in moderate to high yields.


Journal of the American Chemical Society | 2015

Monoselective o-C-H Functionalizations of Mandelic Acid and α-Phenylglycine.

Navid Dastbaravardeh; Tetsuya Toba; Marcus E. Farmer; Jin-Quan Yu

Pd-catalyzed C–H functionalization of mandelic acid and α-phenylglycine is reported. We have developed different protocols for the arylation, iodination, acetoxylation, and olefination of these substrates based on two different (Pd(II)/Pd(IV) and Pd(II)/Pd(0)) catalytic cycles. Four crucial features of these protocols are advantageous for practical applications. First, the α-hydroxyl and amino groups are protected with simple protecting groups such as acetates (Ac, Piv) and carbamates (Boc, Fmoc), respectively. Second, these protocols do not involve installation and removal of a directing group. Third, monoselectivity is accomplished. Fourth, no epimerization occurs at the vulnerable α-chiral centers.


Journal of the American Chemical Society | 2017

Rh(III)-Catalyzed meta-C–H Olefination Directed by a Nitrile Template

Hua-Jin Xu; Yi Lu; Marcus E. Farmer; Huai-Wei Wang; Dan Zhao; Yan-Shang Kang; Wei-Yin Sun; Jin-Quan Yu

A range of Rh(III)-catalyzed ortho-C-H functionalizations have been developed; however, extension of this reactivity to remote C-H functionalizations through large-ring rhodacyclic intermediates has yet to be demonstrated. Herein we report the first example of the use of a U-shaped nitrile template to direct Rh(III)-catalyzed remote meta-C-H activation via a postulated 12-membered macrocyclic intermediate. Because the ligands used for Rh(III) catalysts are significantly different from those of Pd(II) catalysts, this offers new opportunities for future development of ligand-promoted meta-C-H activation reactions.


Journal of the American Chemical Society | 2017

Ligand-Enabled meta-Selective C–H Arylation of Nosyl-Protected Phenethylamines, Benzylamines, and 2-Aryl Anilines

Qiuping Ding; Shengqing Ye; Guolin Cheng; Peng Wang; Marcus E. Farmer; Jin-Quan Yu

A Pd-catalyzed, meta-selective C-H arylation of nosyl-protected phenethylamines and benzylamines is disclosed using a combination of norbornene and pyridine-based ligands. Subjecting nosyl protected 2-aryl anilines to this protocol led to meta-C-H arylation at the remote aryl ring. A diverse range of aryl iodides are tolerated in this reaction, along with select heteroaryl iodides. Select aryl bromides bearing ortho-coordinating groups can also be utilized as effective coupling partners in this reaction. The use of pyridine ligands has allowed the palladium loading to be reduced to 2.5 mol %. Furthermore, a catalytic amount of 2-norbornene (20 mol %) to mediate this meta-C-H activation process is demonstrated for the first time. Utilization of a common protecting group as the directing group for meta-C-H activation of amines is an important feature of this reaction in terms of practical applications.


Nature | 2017

Ligand-accelerated non-directed C–H functionalization of arenes

Peng Wang; Pritha Verma; Guoqin Xia; Jun Shi; Jennifer X. Qiao; Shiwei Tao; Peter T. W. Cheng; Michael A. Poss; Marcus E. Farmer; Kap-Sun Yeung; Jin-Quan Yu

The directed activation of carbon–hydrogen bonds (C–H) is important in the development of synthetically useful reactions, owing to the proximity-induced reactivity and selectivity that is enabled by coordinating functional groups. Palladium-catalysed non-directed C–H activation could potentially enable further useful reactions, because it can reach more distant sites and be applied to substrates that do not contain appropriate directing groups; however, its development has faced substantial challenges associated with the lack of sufficiently active palladium catalysts. Currently used palladium catalysts are reactive only with electron-rich arenes, unless an excess of arene is used, which limits synthetic applications. Here we report a 2-pyridone ligand that binds to palladium and accelerates non-directed C–H functionalization with arene as the limiting reagent. This protocol is compatible with a broad range of aromatic substrates and we demonstrate direct functionalization of advanced synthetic intermediates, drug molecules and natural products that cannot be used in excessive quantities. We also developed C–H olefination and carboxylation protocols, demonstrating the applicability of our methodology to other transformations. The site selectivity in these transformations is governed by a combination of steric and electronic effects, with the pyridone ligand enhancing the influence of sterics on the selectivity, thus providing complementary selectivity to directed C–H functionalization.


Angewandte Chemie | 2017

Ligand-Promoted meta-C−H Functionalization of Benzylamines

Peng Wang; Marcus E. Farmer; Jin-Quan Yu

Meta-C-H functionalization of benzylamines has been developed using a PdII /transient mediator strategy. Using 2-pyridone ligands and 2-carbomethoxynorbornene (NBE-CO2 Me) as the mediator, arylation, amination, and chlorination of benzylamines are realized. This protocol features a broad substrate scope and is compatible with heterocylic coupling partners. Moreover, the loading of the Pd can be lowered to 2.5 mol % by using the optimal ligand.


Bioorganic & Medicinal Chemistry | 2014

Unlocking nature’s CH bonds

Marcus E. Farmer; Brian N. Laforteza; Jin-Quan Yu

In an idealistic setting, it can be imagined that if every CH bond on an organic molecule could be selectively functionalized, the fields of chemical synthesis and drug discovery would be forever revolutionized. With the purpose of investigating the practicality of this idealistic scenario, our group has endeavored to unlock the potential of natures CH bonds by developing palladium-catalyzed, site selective CH insertions that can be incorporated into both known and new catalytic cycles. To this end, we have developed a number of catalytic transformations that not only provide rapid diversification of simple starting materials and natural products through CH functionalization, but streamline the synthesis of a variety of natural products with biological activity and expand upon methods to access highly valuable enantiopure materials.


Nature | 2015

Organic chemistry: A cure for catalyst poisoning.

Marcus E. Farmer; Phil S. Baran

Compounds that are sensitive to the components of air are difficult to use in chemical reactions, requiring conditions that are tedious to set up. A simple, practical solution to this problem has finally been devised. See Letter p.208 The chemical synthesis of many compounds for applications ranging from materials science to drug discovery rely on components that are sensitive to oxygen and water contained in the atmosphere, and many valuable chemical reagents spoil before they are fully consumed. Stephen Buchwald and colleagues report an encapsulation method that uses paraffin wax to render sensitive compound mixtures stable so that they can be stored on a laboratory bench top. The authors demonstrate this approach in single-use capsules that contain all of the reagents (catalysts, ligands, and bases) necessary for palladium-catalysed carbon–fluorine, carbon–nitrogen, and carbon–carbon bond forming reactions. The strategy described here should be broadly applicable to a wide range of reagents and catalysts, making many more synthetic processes readily available to non-specialist laboratories.

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Jin-Quan Yu

Scripps Research Institute

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Peng Wang

Chinese Academy of Sciences

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Gen‐Cheng Li

Scripps Research Institute

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Hang Shi

Scripps Research Institute

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Pankaj Jain

University of South Florida

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Peng-Xiang Shen

Scripps Research Institute

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Phil S. Baran

Scripps Research Institute

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Ru-Yi Zhu

Scripps Research Institute

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Yan-Qiao Chen

Scripps Research Institute

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