María De La Fuente

Increased reservoir ages and poorly ventilated deep waters inferred in the glacial Eastern Equatorial Pacific

Consistent evidence for a poorly ventilated deep Pacific Ocean that could have released its radiocarbon-depleted carbon stock to the atmosphere during the last deglaciation has long been sought. Such evidence remains lacking, in part due to a paucity of surface reservoir age reconstructions required for accurate deep-ocean ventilation age estimates. Here we combine new radiocarbon data from the Eastern Equatorial Pacific (EEP) with chronostratigraphic calendar age constraints to estimate shallow sub-surface reservoir age variability, and thus provide estimates of deep-ocean ventilation ages. Both shallow- and deep-water ventilation ages drop across the last deglaciation, consistent with similar reconstructions from the South Pacific and Southern Ocean. The observed regional fingerprint linking the Southern Ocean and the EEP is consistent with a dominant southern source for EEP thermocline waters and suggests relatively invariant ocean interior transport pathways but significantly reduced air–sea gas exchange in the glacial southern high latitudes.

Marker-based linkage map of Andean common bean (Phaseolus vulgaris L.) and mapping of QTLs underlying popping ability traits

BackgroundNuña bean is a type of ancient common bean (Phaseolus vulgaris L.) native to the Andean region of South America, whose seeds possess the unusual property of popping. The nutritional features of popped seeds make them a healthy low fat and high protein snack. However, flowering of nuña bean only takes place under short-day photoperiod conditions, which means a difficulty to extend production to areas where such conditions do not prevail. Therefore, breeding programs of adaptation traits will facilitate the diversification of the bean crops and the development of new varieties with enhanced healthy properties. Although the popping trait has been profusely studied in maize (popcorn), little is known about the biology and genetic basis of the popping ability in common bean. To obtain insights into the genetics of popping ability related traits of nuña bean, a comprehensive quantitative trait loci (QTL) analysis was performed to detect single-locus and epistatic QTLs responsible for the phenotypic variance observed in these traits.ResultsA mapping population of 185 recombinant inbred lines (RILs) derived from a cross between two Andean common bean genotypes was evaluated for three popping related traits, popping dimension index (PDI), expansion coefficient (EC), and percentage of unpopped seeds (PUS), in five different environmental conditions. The genetic map constructed included 193 loci across 12 linkage groups (LGs), covering a genetic distance of 822.1 cM, with an average of 4.3 cM per marker. Individual and multi-environment QTL analyses detected a total of nineteen single-locus QTLs, highlighting among them the co-localized QTLs for the three popping ability traits placed on LGs 3, 5, 6, and 7, which together explained 24.9, 14.5, and 25.3% of the phenotypic variance for PDI, EC, and PUS, respectively. Interestingly, epistatic interactions among QTLs have been detected, which could have a key role in the genetic control of popping.ConclusionsThe QTLs here reported constitute useful tools for marker assisted selection breeding programs aimed at improving nuña bean cultivars, as well as for extending our knowledge of the genetic determinants and genotype x environment interaction involved in the popping ability traits of this bean crop.

Variation for nodulation and plant yield of common bean genotypes and environmental effects on the genotype expression

Common bean symbiotic nitrogen fixation provides an ecological and economical alternative to increase bean production but it depends on soil fertility and climate conditions. The objectives of this work were to characterize common bean genotypes for their ability to establish symbiosis under controlled conditions and to study the effect of the environment on the expression of those genotypes. The experiment under controlled conditions was conducted in a greenhouse with 158 genotypes that represented the major dry bean market classes. The field experiment was carried out in six environments with 64 genotypes that were previously selected for their contrasting nodulation ability and/or root development under the controlled conditions experiment. Nodulation, plant, and grain yield data of the bean genotypes were measured in both experiments. There was a significant high variability in plant development responses among the studied genotypes associated with the rhizobial strain inoculated under controlled conditions. Two nodulation phenotypes were observed among the genotypes tested: the big-nodules phenotype (BNO) associated with almost 63% fewer nodules and 58% higher proportion of nodule biomass in the below-ground compartment than the small-nodules phenotype (SNO) with less developed aerial parts. Genotype plus genotype × environment (GGE) biplot model analysis enabled identification of the highest-yielding genotypes for the different environments. The soil chemical factors of these environments were associated with the nodule number or the biomass of the common bean genotypes. Genotypes with a BNO phenotype showed a good plant response, indicating that this phenotype may be more beneficial for plant growth and seed yield in environmental conditions that may limit nodule development. The amplitude of the genotypic variability found in this work confirms the potential for rhizobial symbiosis of adapted bean genotypes, which could constitute a preferential material for initial breeding of symbiotically active lines. The data also indicate the potential of bean breeding to identify environments containing effective strains of rhizobia essential for sustainable agriculture, improving productivity, and maintaining environmental quality.

Protein markers and seed size variation in common bean segregating populations.

Selection and random genetic drift are the two main forces affecting allele frequencies in common bean breeding programs. Therefore, knowledge on allele frequency changes attributable to these forces is of fundamental importance for breeders. The changes in frequencies of alleles of biochemical markers were examined in F2 to F7 populations derived from crosses between cultivated Mesoamerican and Andean common bean accessions (Phaseolus vulgaris L.). Biochemical markers included the seed proteins phaseolin, lectin and other seed polypeptides, and six isozymes. The Schaffer’s test detected a high significant linear trend of the 63% of the polymorphic loci studied, meaning that directional selection was acting on those loci. Associations between seed size traits, phaseolin seed-storage protein and isozyme markers were detected based on the comparisons of the progeny genotypic means. In the interracial populations the intermediate form PhaH/T, b6, and Rbcs98 alleles had a positive effect on seed size. In the inter-gene pool populations, a higher transmission of Mesoamerican alleles in all loci was showed, although the Andean alleles PhaT, Skdh100, Rbcs98, and Diap100 showed positive effects on seed weight. Our results suggest that phaseolin and other seed proteins markers are linked to loci affecting seed size. These markers have good potential for improving the results of the selection and should be considered as a strategy for germplasm enhancement and to avoid the reduced performance of the inter-gene pool populations.

Assessing the influence of biogeographical region and phylogenetic history on chemical defences and herbivory in Quercus species

Biogeographical factors and phylogenetic history are key determinants of inter-specific variation in plant defences. However, few studies have conducted broad-scale geographical comparisons of plant defences while controlling for phylogenetic relationships, and, in doing so, none have separated constitutive from induced defences. This gap has limited our understanding of how historical or large-scale processes mediate biogeographical patterns in plant defences since these may be contingent upon shared evolutionary history and phylogenetic constraints. We conducted a phylogenetically-controlled experiment testing for differences in constitutive leaf chemical defences and their inducibility between Palearctic and Nearctic oak species (Quercus, total 18 species). We induced defences in one-year old plants by inflicting damage by gypsy moth larvae (Lymantria dispar), estimated the amount of leaf area consumed, and quantified various groups of phenolic compounds. There was no detectable phylogenetic signal for constitutive or induced levels of most defensive traits except for constitutive condensed tannins, as well as no phylogenetic signal in leaf herbivory. We did, however, find marked differences in defence levels between oak species from each region: Palearctic species had higher levels of constitutive condensed tannins, but less constitutive lignins and less constitutive and induced hydrolysable tannins compared with Nearctic species. Additionally, Palearctic species had lower levels of leaf damage compared with Nearctic species. These differences in leaf damage, lignins and hydrolysable (but not condensed) tannins were lost after accounting for phylogeny, suggesting that geographical structuring of phylogenetic relationships mediated biogeographical differences in defences and herbivore resistance. Together, these findings suggest that historical processes and large-scale drivers have shaped differences in allocation to constitutive defences (and in turn resistance) between Palearctic and Nearctic oaks. Moreover, although evidence of phylogenetic conservatism in the studied traits is rather weak, shared evolutionary history appears to mediate some of these biogeographical patterns in allocation to chemical defences.

Interspecific variation in leaf functional and defensive traits in oak species and its underlying climatic drivers

Plants exhibit a diverse set of functional traits and ecological strategies which reflect an adaptation process to the biotic and abiotic components of the environment. The Plant Economic Spectrum organizes these traits along a continuum from conservative to acquisitive resource use strategies and shows how the abiotic environment governs a species’ position along the continuum. However, this framework does not typically account for leaf traits associated with herbivore resistance, despite fundamental metabolic links (and therefore co-variance) between resource use traits and defensive traits. Here we analyzed a suite of leaf traits associated with either resource use (specific leaf area [SLA], nutrients and water content) or defenses (phenolic compounds) for saplings of 11 species of oaks (Quercus spp.), and further investigated whether climatic variables underlie patterns of trait interspecific variation. An ordination of leaf traits revealed the primary axis of trait variation to be leaf economic spectrum traits associated with resource use (SLA, nitrogen, water content) in conjunction with a defensive trait (condensed tannins). Secondary and tertiary axes of trait variation were mainly associated with other defensive traits (lignins, flavonoids, and hydrolysable tannins). Within the primary axis we found a trade-off between resource use traits and both water content and condensed tannins; species with high SLA and leaf N values invested less in condensed tannins and viceversa. Moreover, temperature and precipitation mediated the trait space occupied by species, such that species distributed in warmer and drier climates had less leaf N, lower SLA, and more defenses (condensed tannins, lignins and flavonoids), whereas opposite values were observed for species distributed in colder and wetter climates. These results emphasize the role of abiotic controls over all-inclusive axes of trait variation and contribute to a more complete understanding of interspecific variation in plant functional strategies.