María Sofía Urbieta

Draft Genome Sequence of the Novel Thermoacidophilic Archaeon Acidianus copahuensis Strain ALE1, Isolated from the Copahue Volcanic Area in Neuquén, Argentina

ABSTRACT Acidianus copahuensis is a recently characterized thermoacidophilic archaeon isolated from the Copahue volcanic area in Argentina. Here, we present its draft genome sequence, in which we found genes involved in key metabolic pathways for developing under Copahues extreme environmental conditions, such as sulfur and iron oxidation, carbon fixation, and metal tolerance.

Effects of Physiochemical Factors on Prokaryotic Biodiversity in Malaysian Circumneutral Hot Springs

Malaysia has a great number of hot springs, especially along the flank of the Banjaran Titiwangsa mountain range. Biological studies of the Malaysian hot springs are rare because of the lack of comprehensive information on their microbial communities. In this study, we report a cultivation-independent census to describe microbial communities in six hot springs. The Ulu Slim (US), Sungai Klah (SK), Dusun Tua (DT), Sungai Serai (SS), Semenyih (SE), and Ayer Hangat (AH) hot springs exhibit circumneutral pH with temperatures ranging from 43°C to 90°C. Genomic DNA was extracted from environmental samples and the V3–V4 hypervariable regions of 16S rRNA genes were amplified, sequenced, and analyzed. High-throughput sequencing analysis showed that microbial richness was high in all samples as indicated by the detection of 6,334–26,244 operational taxonomy units. In total, 59, 61, 72, 73, 65, and 52 bacterial phyla were identified in the US, SK, DT, SS, SE, and AH hot springs, respectively. Generally, Firmicutes and Proteobacteria dominated the bacterial communities in all hot springs. Archaeal communities mainly consisted of Crenarchaeota, Euryarchaeota, and Parvarchaeota. In beta diversity analysis, the hot spring microbial memberships were clustered primarily on the basis of temperature and salinity. Canonical correlation analysis to assess the relationship between the microbial communities and physicochemical variables revealed that diversity patterns were best explained by a combination of physicochemical variables, rather than by individual abiotic variables such as temperature and salinity.

Copahue Geothermal System: A Volcanic Environment with Rich Extreme Prokaryotic Biodiversity

The Copahue geothermal system is a natural extreme environment located at the northern end of the Cordillera de los Andes in Neuquén province in Argentina. The geochemistry and consequently the biodiversity of the area are dominated by the activity of the Copahue volcano. The main characteristic of Copahue is the extreme acidity of its aquatic environments; ponds and hot springs of moderate and high temperature as well as Río Agrio. In spite of being an apparently hostile location, the prokaryotic biodiversity detected by molecular ecology techniques as well as cultivation shows a rich and diverse environment dominated by acidophilic, sulphur oxidising bacteria or archaea, depending on the conditions of the particular niche studied. In microbial biofilms, found in the borders of the ponds where thermal activity is less intense, the species found are completely different, with a high presence of cyanobacteria and other photosynthetic species. Our results, collected during more than 10 years of work in Copahue, have enabled us to outline geomicrobiological models for the different environments found in the ponds and Río Agrio. Besides, Copahue seems to be the habitat of novel, not yet characterised autochthonous species, especially in the domain Archaea.

Recovery of Zinc during the Pre-Treatment of a Refractory Gold-Bearing Ore

Mesophilic bacteria were enriched from samples collected from acid mine drainages in La Carolina (San Luis, Argentina). Two enrichments, E1 and E2, showed suitable rates for iron or sulphur oxidation, respectively. Both enrichments were characterized by FISH analysis. They were mainly composed by Leptospirillum ferrooxidans and Acidithiobacillus ferrooxidans respectively. Studies with both, mixed and individual enrichments, showed biooxidation (measured as iron solubilisation) of a refractory gold-bearing pyrite ore from Hualilán (San Juan, Argentina). Pyrite and sphalerite were the main mineral species in the ore with 7% w/w and 8% w/w of iron and zinc and approximately 25 ppm of gold. Leaching experiments (2% w/v ore, 1.8 initial pH, 180 rpm and 30°C) were carried out with the addition of different alternative energy sources (6.67 g/L sulphur powder, 1 g/L ferrous iron, 0.02% w/v yeast extract). Redox potential, pH, ferrous iron concentration and total Fe and Zn were measured regularly. A 100% of iron leaching (after 28 days in the best experimental condition) was observed in some of the cultures. In other systems high zinc release was obtained (100% of dissolution after 28 days in the best experimental condition). Our results strongly suggest that under the correct operating conditions, biooxidation pre-treatment can be used to recover zinc as a subproduct of gold extraction from refractory ore.

Extremophilic Patagonian Microorganisms Working in Biomining

The microorganisms known as extremophiles have become a powerful tool in the field of biotechnology. Among them, acidophilic and thermophilic microorganisms capable of oxidizing iron(II) or sulfur compounds are very important in ore-processing operations as they are able to enhance the dissolution of sulfide ores. The aim of this chapter is to describe the physiological and phylogenetic characteristics of the main acidophilic species and communities found in geothermal and mining environments in Neuquen Province, Patagonia Argentina, and the advances done by our research group in their application to biomining and bioremediation of heavy metals. Additionally, the chapter includes the description of a novel thermoacidophilic archaeon from the genus Acidianus (Acidianus copahuensis) autochthonous of the Copahue geothermal area isolated and characterized by our research group.

Assessment of Microbial Patagonian Communities for Using in Heavy Metal Bioremediation

Assessing microbial communities in extreme environments allows the search for novel extremophilic microorganisms that can be of use in the development or improvement of biotechnological processes. Most microbial communities developed in such harsh environments have different heavy metal resistance strategies of importance in some technological applications as biomining but also in the bioremediation of metal-polluted environments. In this chapter we describe the microbial diversity of an acidic, volcanic geothermal environment in Northern Patagonia of Argentina: the Copahue geothermal system, containing different geothermal manifestations with temperatures up to 90 °C and pH values from 2 to 7 under aerobic and anaerobic conditions, provoking an enormous biodiversity. In addition, we report some heavy metal applications of those communities, focusing mainly in the bioprecipitation of heavy metals using sulfate-reducing microorganisms.

How Flexible are the Prokaryote Consortia in the Extreme Habitat of the Copahue Geothermal System

Microbial consortia taken from an extreme environment were grown at different temperature and enrichment media. The consortia response to environmental changes was evaluated in order to investigate their metabolic flexibility. The molecular technique, DGGE (denaturing gel gradient electrophoresis) was carried out to evaluate the biodiversity. The results show that each consortium was able to grow according to the available resources, demonstrating their flexibility. A selective development was detected when growing conditions were similar to those found in the natural environment even though some species were able to grown even in conditions far away from those present in the sampling sites.

Cyanobacteria and Photosynthetic Species as Part of the Microbial Community Structure of Biofilms in Copahue Geothermal Springs (Neuquén, Argentina)

Copahue is a geothermal field located in the Northwest corner of Neuquén province in Argentina. It is dominated by the still active Copahue volcano. In the area there are many acidic pools, hot springs and solfataras with different temperature and pH conditions that influence their microbial diversity. On the surrounding rocks and the borders of the pools, where water movements and thermal activity are less intense, many biofilms can be found. They have different aspects and structure, and they present less extreme temperature and pH conditions than the ponds and hot springs. Biofilms are a different ecological niche and they have different microbial community structure. In this study carried out by molecular ecology techniques, mainly 16S and 18S rRNA sequencing, we report a strong presence of cyanobacterias, cloroflexi and eukaryotes, not detected in previous biodiversity studies done on water samples. Almost no acidophilic bacteria were found, with the exception of members of genus Thiomonas, also found in the acidic pools. Archaea were detected only in one of the biofilms and the structure of that community seems to be similar to those found in water samples, with many uncultured species mainly related to order Sulfolobales. The aim of this study is to assess microbial community diversity in the biofilms present in this acidic geothermal area, with particular emphasis on detection of cyanobacterias and eukaryotes with potential biotechnological applications like production of alternative energy sources, synthesis and accumulation of biomolecules with antiviral or antibiotic activities or potential ability to bioremediate contaminated areas.