Marie-belle Saab

Peptides for functionalization of InP semiconductors.

The challenge is to achieve high specificity in molecular sensing by proper functionalization of micro/nano-structured semiconductors by peptides that reveal specific recognition for these structures. Here we report on surface modification of the InP semiconductors by adhesion peptides produced by the phage display technique. An M13 bacteriophage library has been used to screen 10(10) different peptides against the InP(001) and the InP(111) surfaces to finally isolate specific peptides for each orientation of the InP. MALDI-TOF/TOF mass spectrometry has been employed to study real affinity of the peptide towards the InP surfaces. The peptides serve for controlled placement of biotin onto InP to bind then streptavidin. Our Atomic Force Microscopy study revealed a total surface coverage of molecules when the InP surface was functionalized by its specific biotinylated peptide (YAIKGPSHFRPS). Finally, fluorescence microscopy has been employed to demonstrate the preferential attachment of the peptide onto a micro-patterned InP surface. Use of substrate specific peptides could present an alternative solution for the problems encountered in the actually existing sensing methods and molecular self-assembly due to the unwanted unspecific interactions.

Phages recognizing the Indium Nitride semiconductor surface via their peptides

Considerable advances in materials science are expected via the use of selected or designed peptides to recognize material, control their growth, or to assemble them into elaborate novel devices. Identifying specific peptides for a number of technologically useful materials has been the challenge of many research groups in recent years. This can be accomplished by using affinity‐based bio‐panning methods such as phage display technologies. In this work, a combinatorial library including billions of clones of genetically engineered M13 bacteriophage was used to select peptides that could recognize improved indium nitride (InN) semiconductor (SC) material. Several rounds of biopanning were necessary to select the phage with the higher affinity from the low variant library. The DNA of this specific phage was extracted and sequenced to set up the related specific adherent peptide. Atomic force microscopy (AFM) is used to demonstrate the real affinity of a selected phage for the InN surface. Due to the possibility of its functionalization with biomolecules and its important physical properties, InN is a promising candidate for developing affinity‐based optical and electrical biosensors and/or for biomimetic applications. Copyright

Optical chirality of bacteriorhodopsin films via second harmonic Maker's fringes measurements

We experimentally investigated second harmonic generation from an oriented multilayer film of bacteriorhodopsin protein, deposited onto a charged surface. The generated signal is obtained as a function of incidence angle, at different polarization state of both fundamental and generated beams. We show that the measurements, together with the analytical curves, allow to retrieve the nonvanishing elements of the nonlinear optical tensor, including the ones introduced by optical chirality.

Assembly of Purple Membranes on Polyelectrolyte Films

The membrane protein bacteriorhodopsin in its native membrane bound form (purple membrane) was adsorbed and incorporated into polyelectrolyte multilayered films, and adsorption was in situ monitored by optical waveguide light-mode spectroscopy. The formation of a single layer or a double layer of purple membranes was observed when adsorbed on negatively or positively charged surfaces, respectively. The purple membrane patches adsorbed on the polyelectrolyte multilayers were also evidenced by atomic force microscopy images. The driving forces of the adsorption process were evaluated by varying the ionic strength of the solution as well as the purple membrane concentration. At high purple membrane concentration, interpenetrating polyelectrolyte loops might provide new binding sites for the adsorption of a second layer of purple membranes, whereas at lower concentrations only a single layer is formed. Negative surfaces do not promote a second protein layer adsorption. Driving forces other than just electrostatic ones, such as hydrophobic forces, should play a role in the polyelectrolyte/purple membrane layering. The subtle interplay of all these factors determines the formation of the polyelectrolyte/purple membrane matrix with a presumably high degree of orientation for the incorporated purple membranes, with their cytoplasmic, or extracellular side toward the bulk on negatively or positively charged polyelectrolyte, respectively. The structural stability of bacteriorhodopsin during adsorption onto the surface and incorporation into the polyelectrolyte multilayers was investigated by Fourier transform infrared spectroscopy in attenuated total reflection mode. Adsorption and incorporation of purple membranes within polyelectrolyte multilayers does not disturb the conformational majority of membrane-embedded alpha-helix structures of the protein, but may slightly alter the structure of the extramembraneous segments or their interaction with the environment. This high stability is different from the lower stability of the predominantly beta-sheet structures of numerous globular proteins when adsorbed onto surfaces.

Sensing by Means of Nonlinear Optics with Functionalized GaAs/AlGaAs Photonic Crystals

We report on specific functionalization of GaAs/AlGaAs photonic structures for molecular sensing via the optical second harmonic generation signal in the visible range exhibited by these nanostructures. Functionalization has been achieved by peptides selected by the phage display technology, revealing specific recognition for semiconducting surfaces. These small peptides when biotinylated serve for controlled placement of biotin onto the substrate to capture then streptavidin. Functionalization (with biotinylated peptide) and molecular recognition (of streptavidin) events both result in enhancing the nonlinear optical response of the samples. Adsorption and infiltration of biomolecules into the GaAs/AlGaAs photonic structure were monitored by atomic force and scanning electron microscopy combined with Energy Dispersive X-ray spectroscopy. We demonstrate that once functionalized with specific peptides, photonic structures could be used as miniature biosensors down to femtomolar detection sensitivity, by monitoring changes in the second harmonic signal when molecules are captured. Our results prove the outstanding sensitivity of the nonlinear approach in biosensing with photonic crystal waveguides as compared to linear absorption techniques on the same samples. The present work is expected to pioneer development of a new class of extremely small affinity-based biosensors with high sensitivity and demonstrates that photonic structures support device functionality that includes strongly confined and localized nonlinear radiation emission and detection processes.

SVSVGMKPSPRP: a broad range adhesion peptide

Abstract Background: A combinatorial phage display approach was previously used to evolve a 12-mer peptide (SVSVGMKPSPRP) with the highest affinity for different semiconductor surfaces. The discovery of the multiple occurrences of the SVSVGMKPSPRP sequence in an all-against-all basic local alignment search tool search of PepBank sequences was unexpected, and a Google search using the peptide sequence recovered 58 results concerning 12 patents and 16 scientific publications. The number of patent and articles indicates that the peptide is perhaps a broad range adhesion peptide. Methods: To evaluate peptide properties, we conducted a study to investigate peptide adhesion on different inorganic substrates by mass spectrometry and atomic force microscopy for gold, carbon nanotubes, cobalt, chrome alloy, titanium, and titanium alloy substrates. Results: Our results showed that the peptide has a great potential as a linker to functionalize metallic surfaces if specificity is not a key factor. This peptide is not specific to a particular metal surface, but it is a good linker for the functionalization of a wide range of metallic materials. Conclusion: The fact that this peptide has the potential to adsorb on a large set of inorganic surfaces suggests novel promising directions for further investigation. Affinity determination of SVSVGMKPSPRP peptide would be an important issue for eventual commercial uses.