Marina Fomina

Biosorption: current perspectives on concept, definition and application

Biosorption is a physico-chemical and metabolically-independent process based on a variety of mechanisms including absorption, adsorption, ion exchange, surface complexation and precipitation. Biosorption processes are highly important in the environment and conventional biotreatment processes. As a branch of biotechnology, biosorption has been aimed at the removal or recovery of organic and inorganic substances from solution by biological material which can include living or dead microorganisms and their components, seaweeds, plant materials, industrial and agricultural wastes and natural residues. For decades biosorption has been heralded as a promising cost-effective clean-up biotechnology. Despite significant progress in our understanding of this complex phenomenon and a dramatic increase in publications in this research area, commercialization of biosorption technologies has been limited so far. This article summarizes existing knowledge on various aspects of the fundamentals and applications of biosorption and critically reviews the obstacles to commercial success and future perspectives.

Fungal involvement in bioweathering and biotransformation of rocks and minerals

Abstract In the Earth’s lithosphere, fungi are of fundamental importance as decomposer organisms, animal and plant pathogens and symbionts (e.g. lichens and mycorrhizas), being ubiquitous in sub-aerial and subsoil environments. The ability of fungi to interact with minerals, metals, metalloids and organic compounds through biomechanical and biochemical processes, makes them ideally suited as biological weathering agents of rock and building stone. They also play a fundamental role in biogeochemical cycling of nutrients, (e.g. C, N, P and S) and metals (e.g. Na, Mg, Ca, Mn, Fe, Cu, Zn, Co and Ni) essential for the growth of living organisms in the biosphere. In addition they play an integral role in the mobilization and immobilization of non-essential metals (e.g. Cs, Al, Cd, Hg and Pb). Most studies on mineral-microbe interactions and microbial involvement in geological processes have concentrated on bacteria and archaea (Prokaryota): fungi (Eukaryota) have, to a certain extent, been neglected. This article addresses the role of fungi in geomicrobiological processes, emphasizing their deteriorative potential on rock, building stone and mineral surfaces and involvement in the formation of secondary mycogenic minerals. Such roles of fungi are also of importance for the global carbon reservoir and have potential biotechnological applications, e.g. in the bioremediation of xenobiotic-, metal- and/or radionuclide-contaminated soils and wastes, and metal/radionuclide recovery.

Zinc Phosphate and Pyromorphite Solubilization by Soil Plant-Symbiotic Fungi

Acidolysis, complexolysis and metal accumulation were involved in solubilization of zinc phosphate and pyromorphite by a selection of soil fungi representing ericoid and ectomycorrhizal plant symbionts and an endophytic/entomopathogenic fungus, Beauveria caledonica. Zinc phosphate was much more readily solubilized than pyromorphite. According to the relationship between metal mobilization and pH, acidolysis (protonation) was found to be the major mechanism of both zinc phosphate and pyromorphite dissolution for most of the fungi examined. In general, the more metal tolerant fungal strains yielded more biomass, acidified the medium more and dissolved more of the metal mineral than less tolerant strains. However, B. caledonica 4 excreted a substantial amount of oxalic acid (∼ 0.8 mM) in the presence of pyromorphite that coincided with a dramatic increase in lead mobilization providing a clear example of complexolysis. Organic acid excretion by fungi was inter- and intraspecific and was strongly influenced by the presence of the toxic metal minerals. When grown on zinc phosphate or pyromorphite, Hymenoscyphus ericae DGC3(UZ) accumulated the lowest metal concentration, but Thelephora terrestris accumulated the highest metal concentration in the biomass. The ability to accumulate water-soluble lead species, representing mainly cytosolic and vacuolar pools, seemed to be connected with pyromorphite-solubilizing ability. B. caledonica 4, which demonstrated the highest ability to dissolve pyromorphite, accumulated the highest water-soluble fraction and total lead concentration in the mycelium. Generally, isolates with a higher zinc-tolerance accumulated significantly less total zinc from zinc phosphate (including the sum of water-soluble and NaCl-extractable zinc) than non-tolerant strains.

Rock-Building Fungi

Fungi are a major component of the biota in soils and mineral substrates occurring over a wide range of geographical and climatic zones, and are often dominant when compared to other organisms, including bacteria. Due to their filamentous growth habit and ability to excrete organic acids, protons and other metabolites, fungi are perfectly suited as biological weathering agents of natural rocks, minerals, including those used in building materials. Small tunnels discovered inside weatherable minerals in soil were hypothesized to be formed by mineral-solubilizing activities of ectomycorrhizal fungi. Using scanning electron microscopy techniques to visualise in situ fungal weathering of rock, patina formation and secondary mineral precipitation we provide an additional explanation for the occurrence of fungal tunnels inside minerals using carbonates and oxalates as examples. Our findings highlight fungal potential for mineral transformations and their ability to precipitate secondary mycogenic minerals within rock substrata.

Uranium and Fungi

Free-living and symbiotic fungi can interact with, and transform certain uranium species, while general metabolic activities such as decomposition of organic substances and dissolution of rocks and minerals may result in products that indirectly react with uranium. Excretion of organic acids is an important property of many fungi which can result in U-complex formation and U-ore dissolution for example, while fungal biomass can act as an efficient U biosorbent and surface/matrix for U crystallization and biomineralization. Secondary products of organic matter decomposition and mineral dissolution may result in secondary U-complex and U-mineral formation. It is not fully established whether fungi are capable of U(VI) reductive immobilization. Fungal interactions with uranium are relevant to the biogeochemistry of uranium, but also to the applied area of bioremediation. While U biosorption seems not to have a commercial future, some fungal activities may have relevance to contaminated terrestrial habitats. The dependence of almost all land plants on symbiotic mycorrhizal fungi, and the fact that mycorrhizal fungi are capable of uranium transformations may make fungal biogeochemical activity of importance in phyto- or other bioremediation strategies for soils polluted with various forms of uranium.

Zinc Phosphate Transformations by the Paxillus involutus/Pine Ectomycorrhizal Association

In this research, we investigate zinc phosphate transformations by Paxillus involutus/pine ectomycorrhizas using zinc-resistant and zinc-sensitive strains of the ectomycorrhizal fungus under high- and low-phosphorus conditions to further understand fungal roles in the transformation of toxic metal minerals in the mycorrhizosphere. Mesocosm experiments with ectomycorrhizas were performed under sterile conditions with zinc phosphate localized in cellophane bags: zinc and phosphorus mobilization and uptake by the ectomycorrhizal biomass were analyzed. In the presence of a phosphorus source, an ectomycorrhizal association with a zinc-resistant strain accumulated the least zinc compared to a zinc-sensitive ectomycorrhizal association and non-mycorrhizal plants. Under low-phosphorus conditions, mycorrhizal seedlings infected with the zinc-resistant strain increased the dissolution of zinc phosphate and zinc accumulation by the plant. Extended X-ray absorption fine structure analysis of both mycorrhizal and nonmycorrhizal roots showed octahedral coordination of zinc by oxygen-containing ligands such as carboxylates or phosphate. We conclude that zinc phosphate solubilization and zinc and phosphorus uptake by the association depend on ectomycorrhizal infection, strain of the mycobiont, and the phosphorus status of the matrix.

Fungal Deterioration of Barrier Concrete used in Nuclear Waste Disposal

Fungal biogeochemical activity over a long-term scale may have negative environmental consequences for the management of barrier materials used in nuclear waste disposal. Fungal deterioration of barrier concrete was studied in microcosms simulating a heterogeneous environment with an external source of nutrients for the fungi. Fungi successfully colonized barrier concrete, generally avoiding granite aggregates, and biochemically (by excretion of protons and ligands) and biomechanically deteriorated the concrete. Fungi dissolved the cement matrix leaching structural elements and accumulating them within the fungal biofilm and associated microenvironment. Oxalate-excreting Aspergillus niger formed abundant calcium oxalate crystals on the concrete and encrusting fungal hyphae.

Influence of clay minerals on the morphology of fungal pellets

The objective of this study was to assess the influence of clay minerals on the morphology of mycelial pellets produced under submerged conditions as a prelude to the development of biomineral sorbents for toxic metals. The macro- and microscopic morphology of fungal pellets of melanin-containing microfungi Cladosporium cladosporioides, C. herbarum and Humicola grisea grown in liquid clay-containing medium was studied using scanning electron microscopy. It was found that the inclusion of clay minerals (bentonite, palygorskite and kaolinite) in the liquid medium influenced size, shape and structure of the mycelial pellets produced. In general, a reduction of pellet size, an increase in the length of surface hyphae of the pellets (except for H. grisea ), and a reduction in exopolymer production were observed with increasing clay mineral concentrations up to 5 % (w/v). For C. herbarum , an increasing concentration of bentonite changed the normal pelleted growth form to diffuse star-like growth, which was also observed for C. cladosporioides in the presence of kaolinite. The presence of bentonite and kaolinite in the medium for H. grisea and palygorskyte for C. cladosporioides led to the formation of numerous bulbous hyphae in pellets. However, bentonite decreased such bulbous growth in C. herbarum compared to control pellets which grew as bulbous mycelium. The dynamics of C. cladosporioides growth and pellet formation in the presence of bentonite (0.5% (w/v)) was investigated. It was found that the clay particles were involved in the formation of pellet structure at all stages of fungal growth. The porosity of a growing pellet (evaluated as the ratio of surface hyphae length to pellet radius) increased during early growth (17–24 h) and then decreased up to the stationary phase. A general model of the structure of a fungal pellet grown in clay-containing medium is proposed. The pellets consist of three main layers: a central core, with densely packed mycelium aggregated with solid clay minerals or a matrix of clay/polysaccharides; a middle layer with looser mycelium mixed with clay mineral flakes; and an outer, or ‘hairy’ zone, with loose hyphae surrounded by clay mineral flakes. The relevance of these studies to fungal growth and morphology, and to the development of biomineral sorbents for metal removal is discussed.

Development and optimization of an 18S rRNA-based oligonucleotide microarray for the fungal order Eurotiales.

Aims:  For identification of members of the fungal order Eurotiales, an 18S rRNA gene‐based oligonucleotide microarray was developed and optimized.

F-RISA fungal clones as potential bioindicators of organic and metal contamination in soil

Aims:  This work has examined the effects of a polycyclic aromatic hydrocarbon and selected toxic metals on fungal populations in a soil microcosm.