Marjatta Raudaskoski

Genome sequence of the model mushroom Schizophyllum commune

Much remains to be learned about the biology of mushroom-forming fungi, which are an important source of food, secondary metabolites and industrial enzymes. The wood-degrading fungus Schizophyllum commune is both a genetically tractable model for studying mushroom development and a likely source of enzymes capable of efficient degradation of lignocellulosic biomass. Comparative analyses of its 38.5-megabase genome, which encodes 13,210 predicted genes, reveal the speciess unique wood-degrading machinery. One-third of the 471 genes predicted to encode transcription factors are differentially expressed during sexual development of S. commune. Whereas inactivation of one of these, fst4, prevented mushroom formation, inactivation of another, fst3, resulted in more, albeit smaller, mushrooms than in the wild-type fungus. Antisense transcripts may also have a role in the formation of fruiting bodies. Better insight into the mechanisms underlying mushroom formation should affect commercial production of mushrooms and their industrial use for producing enzymes and pharmaceuticals.

Basidiomycete mating type genes and pheromone signaling.

ABSTRACT The genome sequences of the basidiomycete Agaricomycetes species Coprinopsis cinerea, Laccaria bicolor, Schizophyllum commune, Phanerochaete chrysosporium, and Postia placenta, as well as of Cryptococcus neoformans and Ustilago maydis, are now publicly available. Out of these fungi, C. cinerea, S. commune, and U. maydis, together with the budding yeast Saccharomyces cerevisiae, have been investigated for years genetically and molecularly for signaling in sexual reproduction. The comparison of the structure and organization of mating type genes in fungal genomes reveals an amazing conservation of genes regulating the sexual reproduction throughout the fungal kingdom. In agaricomycetes, two mating type loci, A, coding for homeodomain type transcription factors, and B, encoding a pheromone/receptor system, regulate the four typical mating interactions of tetrapolar species. Evidence for both A and B mating type genes can also be identified in basidiomycetes with bipolar systems, where only two mating interactions are seen. In some of these fungi, the B locus has lost its self/nonself discrimination ability and thus its specificity while retaining the other regulatory functions in development. In silico analyses now also permit the identification of putative components of the pheromone-dependent signaling pathways. Induction of these signaling cascades leads to development of dikaryotic mycelia, fruiting body formation, and meiotic spore production. In pheromone-dependent signaling, the role of heterotrimeric G proteins, components of a mitogen-activated protein kinase (MAPK) cascade, and cyclic AMP-dependent pathways can now be defined. Additionally, the pheromone-dependent signaling through monomeric, small GTPases potentially involved in creating the polarized cytoskeleton for reciprocal nuclear exchange and migration during mating is predicted.

Occurence of microtubules and microfilaments, and origin of septa in dikaryotic hyphae ofSchizophyllum commune

SummaryIn an electron microscopic study on the dikaryotic hyphae ofSchizophyllum commune, microtubules were observed during the nuclear division, and close to the non-dividing nuclei of apical cells and older cells. Microtubules of the spindle were connected with semicircular bodies at nuclear poles. Microfilaments were detected in the distal part of the apical cells. Vesicles similar to those in the tips of the hyphae occured also at the sites of septa formation. The occurrence of microtubules and the structure of semicircular bodies are compared with those in other basidiomycetes. It is suggested that vesicles are involved in the primary growth of the septal cross wall.

Effect of aeration and light on fruit body induction in Schizophyllum commune

When dikaryotic mycelium of Schizophyllum commune was cultivated on complete medium for 3 days at 25 °C in the dark and then transferred to continuous light at the same temperature, fruit body differentiation took place in 24 h. The first clear sign of differentiation, seen between 8–12 h in the light, was a uniform front of synchronously growing hyphae, which later became the inner border of the fruit body. The outer border was formed between 12 and 20 h. A significant shortening in the length of the cells was observed in the mycelium producing fruit bodies. The comparison of cell length in cultures growing in light and dark, with and without aeration, indicated that the primary factor controlling cell length was aeration and then light. A pattern of intensified hyphal branching, including growth of clamp connexions into branches, that was observed only in the cultures grown in light was also interpreted as a light-induced response.

Ras GTPase-Activating Protein Gap1 of the Homobasidiomycete Schizophyllum commune Regulates Hyphal Growth Orientation and Sexual Development

ABSTRACT The white rot fungus Schizophyllum commune is used for the analysis of mating and sexual development in homobasidiomycete fungi. In this study, we isolated the gene gap1 encoding a GTPase-activating protein for Ras. Disruption of gap1 should therefore lead to strains accumulating Ras in its activated, GTP-bound state and to constitutive Ras signaling. Haploid Δgap1 monokaryons of different mating types did not show alterations in mating behavior in the four different mating interactions possible in fungi expressing a tetrapolar mating type system. Instead, the growth rate in Δgap1 monokaryons was reduced by ca. 25% and ca. 50% in homozygous Δgap1/Δgap1 dikaryons. Monokaryons, as well as homozygous dikaryons, carrying the disrupted gap1 alleles exhibited a disorientated growth pattern. Dikaryons showed a strong phenotype during clamp formation since hook cells failed to fuse with the peg beside them. Instead, the dikaryotic character of the hyphae was rescued by fusion of the hooks with nearby developing branches. Δgap1/Δgap1 dikaryons formed increased numbers of fruitbody primordia, whereas the amount of fruitbodies was not raised. Mature fruitbodies formed no or abnormal gills. No production of spores could be observed. The results suggest Ras involvement in growth, clamp formation, and fruitbody development.

Light and electron microscope study of unilateral mating between a secondary mutant and a wild-type strain ofSchizophyllum commune

SummaryAfter hyphal fusions between the secondary mutant and wild-type strains ofSchizophyllum commune some of the fused hyphae show several nuclei per cell and dissolved septa. These hyphae are designated migration hyphae because they are evidently the main routes of nuclear exchange between the two strains. On the wild-type side of the mating the nuclei spread gradually from the main part of the migration hyphae into the side branches, which develop into an extensive network with many anastomoses. The first cells with pseudoclamps or clamp connections are observed in this network.On the mutant side of the mating the branching is less developed and the number of anastomoses is smaller. The cross walls of the septa are poorly dissolved, and nuclear aggregations occur in the hyphae. No development of clamp connections or pseudoclamps is observed. It is suggested that the unilateral mating response of the secondary mutant strain might possibly be caused by the failure of the septa in the mutant hyphae to dissolve, which inhibits the distribution of the nuclei into the side branches of migration hyphae.

Interaction with mycorrhiza helper bacterium Streptomyces sp. AcH 505 modifies organisation of actin cytoskeleton in the ectomycorrhizal fungus Amanita muscaria (fly agaric)

The actin cytoskeleton (AC) of fungal hyphae is a major determinant of hyphal shape and morphogenesis, implicated in controlling tip structure and secretory vesicle delivery. Hyphal growth of the ectomycorrhizal fungus Amanita muscaria and symbiosis formation with spruce are promoted by the mycorrhiza helper bacterium Streptomyces sp. AcH 505 (AcH 505). To investigate structural requirements of growth promotion, the effect of AcH 505 on A. muscaria hyphal morphology, AC and actin gene expression were studied. Hyphal diameter and mycelial density decreased during dual culture (DC), and indirect immunofluorescence microscopy revealed that the dense and polarised actin cap in hyphal tips of axenic A. muscaria changes to a loosened and dispersed structure in DC. Supplementation of growth medium with cell-free bacterial supernatant confirmed that reduction in hyphal diameter and AC changes occurred at the same stage of growth. Transcript levels of both actin genes isolated from A. muscaria remained unaltered, indicating that AC changes are regulated by reorganisation of the existing actin pool. In conclusion, the AC reorganisation appears to result in altered hyphal morphology and faster apical extension. The thus improved spreading of hyphae and increased probability to encounter plant roots highlights a mechanism behind the mycorrhiza helper effect.

Transcriptome and Functional Analysis of Mating in the Basidiomycete Schizophyllum commune

ABSTRACT In this study, we undertook a functional characterization and transcriptome analysis that enabled a comprehensive study of the mating type loci of the mushroom Schizophyllum commune. Induced expression of both the bar2 receptor and the bap2(2) pheromone gene within 6 to 12 h after mates contact was demonstrated by quantitative real-time PCR. Similar temporal expression patterns were confirmed for the allelic bbr1 receptor and bbp1 pheromone-encoding genes by Northern hybridization. Interestingly, the fusion of clamp connections to the subterminal cell was delayed in mating interactions in which one of the compatible partners expressed the bar2 receptor with a truncated C terminus. This developmental delay allowed the visualization of a green fluorescent protein (Gfp)-labeled truncated receptor at the cell periphery, consistent with a localization in the plasma membrane of unfused pseudoclamps. This finding does not support hypotheses envisioning a receptor localization to the nuclear membrane facilitating recognition between the two different nuclei present in each dikaryotic cell. Rather, Gfp fluorescence observed in such pseudoclamps indicated a role of receptor-pheromone interaction in clamp fusion. Transcriptome changes associated with mating interactions were analyzed in order to identify a role for pheromone-receptor interactions. We detected a total of 89 genes that were transcriptionally regulated in a mating type locus A-dependent manner, employing a cutoff of 5-fold changes in transcript abundance. Upregulation in cell cycle-related genes and downregulation of genes involved in metabolism were seen with this set of experiments. In contrast, mating type locus B-dependent transcriptome changes were observed in 208 genes, with a specific impact on genes related to cell wall and membrane metabolism, stress response, and the redox status of the cell.

Scanning electron microscope study of fruit body differentiation in Schizophyllum commune

A scanning electron microscope study of Schizophyllum commune indicated that early stages of fruit body differentiation involve formation of hyphal strands and parallel growth of hyphae. The hymenium also develops early. Of these morphological changes the parallel growth of hyphae was interpreted as induced by light, strand formation by light and aeration, and differentiation of the hymenium by the prevailing nutritional conditions. In spite of the early differentiation of the hymenium, the production of basidiospores was delayed by a layer of slime covering the ventral surface until the growth of the gills. Slime also appeared to function as a controlling factor in several other phases of growth and differentiation.

Occurrence of microtubules in the hyphae of Schizophyllum commune during intercellular nuclear migration

SummaryDuring the intercellular nuclear migration of the basidiomycete Schizophyllum commune cytoplasmic microtubules were frequently observed scattered in the hyphae around interphase nuclei and connected with a semiglobular structure at the poles of mitotic and postmitotic nuclei. Thus it seems possible that microtubules, which have been demonstrated to participate in the intracellular nuclear movements in the dikaryotic hyphae of the basidiomycetes, are also involved in the intercellular nuclear movements of these fungi. During hyphal fusion microtubules close to an interphase nucleus were connected with electron-dense structures. It is suggested that these structures are centers for the assembly of microtubules necessary for nuclear movements not associated with nuclear divisions.