Mark A. Nanny

Characterization and comparison of hydrophobic neutral and hydrophobic acid dissolved organic carbon isolated from three municipal landfill leachates.

The acid-precipitated (AP) and acid-soluble (AS) fractions of the combined hydrophobic neutral and hydrophobic acid dissolved organic carbon (DOC) were isolated from leachate collected from three municipal landfills of different age and redox conditions. The AP and the AS combined hydrophobic neutral and hydrophobic acid DOC comprised 6-15% and 51-66%, respectively, of the leachate nonpurgable organic carbon. Elemental analysis, infra-red spectroscopy, 13C CP-MAS nuclear magnetic resonance spectroscopy and dipolar dephasing experiments, and thermochemolysis gas chromatography/mass spectrometry results showed that the AP and AS fractions of hydrophobic neutral and hydrophobic acid DOC are highly aliphatic, with linear and branching moieties, and less oxidized than most terrestrial and aquatic humic substances. Very little, if any, polysaccharide or cellulose, lignin, or cutin components comprise these fractions. It is hypothesized that a majority of the organic carbon in these fractions originates highly branched, cyclic aliphatic organic compounds.

Metabolism of Benzoate, Cyclohex-1-ene Carboxylate, and Cyclohexane Carboxylate by “Syntrophus aciditrophicus” Strain SB in Syntrophic Association with H2-Using Microorganisms

ABSTRACT The metabolism of benzoate, cyclohex-1-ene carboxylate, and cyclohexane carboxylate by “Syntrophus aciditrophicus” in cocultures with hydrogen-using microorganisms was studied. Cyclohexane carboxylate, cyclohex-1-ene carboxylate, pimelate, and glutarate (or their coenzyme A [CoA] derivatives) transiently accumulated during growth with benzoate. Identification was based on comparison of retention times and mass spectra of trimethylsilyl derivatives to the retention times and mass spectra of authentic chemical standards. 13C nuclear magnetic resonance spectroscopy confirmed that cyclohexane carboxylate and cyclohex-1-ene carboxylate were produced from [ring-13C6]benzoate. None of the metabolites mentioned above was detected in non-substrate-amended or heat-killed controls. Cyclohexane carboxylic acid accumulated to a concentration of 260 μM, accounting for about 18% of the initial benzoate added. This compound was not detected in culture extracts ofRhodopseudomonas palustris grown phototrophically orThauera aromatica grown under nitrate-reducing conditions. Cocultures of “S. aciditrophicus” andMethanospirillum hungatei readily metabolized cyclohexane carboxylate and cyclohex-1-ene carboxylate at a rate slightly faster than the rate of benzoate metabolism. In addition to cyclohexane carboxylate, pimelate, and glutarate, 2-hydroxycyclohexane carboxylate was detected in trace amounts in cocultures grown with cyclohex-1-ene carboxylate. Cyclohex-1-ene carboxylate, pimelate, and glutarate were detected in cocultures grown with cyclohexane carboxylate at levels similar to those found in benzoate-grown cocultures. Cell extracts of “S. aciditrophicus” grown in a coculture withDesulfovibrio sp. strain G11 with benzoate or in a pure culture with crotonate contained the following enzyme activities: an ATP-dependent benzoyl-CoA ligase, cyclohex-1-ene carboxyl-CoA hydratase, and 2-hydroxycyclohexane carboxyl-CoA dehydrogenase, as well as pimelyl-CoA dehydrogenase, glutaryl-CoA dehydrogenase, and the enzymes required for conversion of crotonyl-CoA to acetate. 2-Ketocyclohexane carboxyl-CoA hydrolase activity was detected in cell extracts of “S. aciditrophicus”-Desulfovibrio sp. strain G11 benzoate-grown cocultures but not in crotonate-grown pure cultures of “S. aciditrophicus”. These results are consistent with the hypothesis that ring reduction during syntrophic benzoate metabolism involves a four- or six-electron reduction step and that once cyclohex-1-ene carboxyl-CoA is made, it is metabolized in a manner similar to that in R. palustris.

Cyclohexane Carboxylate and Benzoate Formation from Crotonate in Syntrophus aciditrophicus

ABSTRACT The anaerobic, syntrophic bacterium Syntrophus aciditrophicus grown in pure culture produced 1.4 ± 0.24 mol of acetate and 0.16 ± 0.02 mol of cyclohexane carboxylate per mole of crotonate metabolized. [U-13C]crotonate was metabolized to [1,2-13C]acetate and [1,2,3,4,5,7-13C]cyclohexane carboxylate. Cultures grown with unlabeled crotonate and [13C]sodium bicarbonate formed [6-13C]cyclohexane carboxylate. Trimethylsilyl (TMS) derivatives of cyclohexane carboxylate, cyclohex-1-ene carboxylate, benzoate, pimelate, glutarate, 3-hydroxybutyrate, and acetoacetate were detected as intermediates by comparison of retention times and mass spectral profiles to authentic standards. With [U-13C]crotonate, the m/z-15 ion of TMS-derivatized glutarate, 3-hydroxybutyrate, and acetoacetate each increased by +4 mass units, and the m/z-15 ion of TMS-derivatized pimelate, cyclohex-1-ene carboxylate, benzoate, and cyclohexane carboxylate each increased by +6 mass units. With [13C]sodium bicarbonate and unlabeled crotonate, the m/z-15 ion of TMS derivatives of glutarate, pimelate, cyclohex-1-ene carboxylate, benzoate, and cyclohexane carboxylate each increased by +1 mass unit, suggesting that carboxylation occurred after the synthesis of a four-carbon intermediate. With [1,2-13C]acetate and unlabeled crotonate, the m/z-15 ion of TMS-derivatized 3-hydroxybutyrate, acetoacetate, and glutarate each increased by +0, +2, and +4 mass units, respectively, and the m/z-15 ion of TMS-derivatized pimelate, cyclohex-1-ene carboxylate, benzoate, cyclohexane carboxylate, and 2-hydroxycyclohexane carboxylate each increased by +0, +2, +4, and +6 mass units. The data are consistent with a pathway for cyclohexane carboxylate formation involving the condensation of two-carbon units derived from crotonate degradation with CO2 addition, rather than the use of the intact four-carbon skeleton of crotonate.

Stable Isotopic Studies of n-Alkane Metabolism by a Sulfate-Reducing Bacterial Enrichment Culture

ABSTRACT Gas chromatography-mass spectrometry and nuclear magnetic resonance spectroscopy were used to study the metabolism of deuterated n-alkanes (C6 to C12) and 1-13C-labeled n-hexane by a highly enriched sulfate-reducing bacterial culture. All substrates were activated via fumarate addition to form the corresponding alkylsuccinic acid derivatives as transient metabolites. Formation of d14-hexylsuccinic acid in cell extracts from exogenously added, fully deuterated n-hexane confirmed that this reaction was the initial step in anaerobic alkane metabolism. Analysis of resting cell suspensions amended with 1-13C-labeled n-hexane confirmed that addition of the fumarate occurred at the C-2 carbon of the parent substrate. Subsequent metabolism of hexylsuccinic acid resulted in the formation of 4-methyloctanoic acid, and 3-hydroxy-4-methyloctanoic acid was tentatively identified. We also found that 13C nuclei from 1-13C-labeled n-hexane became incorporated into the succinyl portion of the initial metabolite in a manner that indicated that 13C-labeled fumarate was formed and recycled during alkane metabolism. Collectively, the findings obtained with a sulfate-reducing culture using isotopically labeled alkanes augment and support the previously proposed pathway (H. Wilkes, R. Rabus, T. Fischer, A. Armstroff, A. Behrends, and F. Widdel, Arch. Microbiol. 177:235-243, 2002) for metabolism of deuterated n-hexane by a denitrifying bacterium.

Characterization of soluble unreactive phosphorus using 31P nuclear magnetic resonance spectroscopy

Abstract 31 P-NMR spectra of soluble unreactive phosphorus (SUP) were obtained over a year from a small mid-western lake (Crystal Lake). Lake water samples were concentrated with ultrafiltration (UF) and reverse osmosis membranes (RO). These membranes were also used to fractionate the SUP according to molecular weight. A sample from the Mississippi River was also analyzed with 31 P-NMR. Diester and monoester phosphates, phosphonates, tri- and/or tetrapolyphosphates, and orthophosphate were detected in these samples. Use of the lanthanide shift reagent (LSR) praseodymium ethlylenediamine tetraacetate, alkaline bromination degradation procedures, and adjustment of sample pH in conjunction with 31 P-NMR spectroscopy provided additional information regarding the SUP. It was found that the SUP pool exists as a variety of organic phosphorus compounds which vary with respect to their apparent molecular size. Secondly, 31 P-NMR data from Crystal Lake demonstrate that the SUP composition varies as a function of season and/or general lake conditions. Thirdly, comparison of Crystal Lake and Mississippi River spectral data shows that the SUP composition differs between distinct hydrological sites. 31 P-NMR spectral data, in conjunction with other information such as LSR data, pH adjustment data, and alkaline bromination data, also illustrate that a portion of the SUP may become incorporated into an aggregate that forms during UF/RO concentration procedures.

Photocatalytic oxidation of aqueous ammonia in model gray waters.

This study investigated the TiO2 photocatalytic degradation of aqueous ammonia (NH4+/NH3) in the presence of surfactants and monosaccharides at pH approximately 10.1. Initial rates of NH4+/NH3 photocatalytic degradation decreased by approximately 50-90% in the presence of anionic, cationic, and nonionic surfactants and monosaccharides. Through correlation analysis, we concluded that scavenging of hydroxyl radical (.OH) by the products of surfactant/monosaccharide photocatalytic degradation, including carbonate and formate, could explain approximately 80% of the variance in initial rates of NH4+/NH3 removal in our system. Addition of a supplemental .OH source (H2O2) enhanced the rate of NH4+/NH3 degradation in the presence of the surfactant Brij 23 lauryl ether (Brij 35), further supporting the idea that .OH scavenging is the mechanism by which surfactants and monosaccharides decreased initial rates of NH4+/NH3 photocatalytic degradation. Despite slowed rates of NH4+/NH3 degradation, both surfactants/monosaccharides and NH4+/NH3 were removed by TiO2 photocatalysis, indicating that this process can effectively remove both carbonaceous and nitrogenous biochemical oxygen demand from gray water.

Deuterium NMR characterization of noncovalent interactions between monoaromatic compounds and fulvic acids

Abstract Deuterium nuclear magnetic resonance spectroscopy ( 2 H-NMR) spin–lattice relaxation ( T 1 ) experiments were used to measure noncovalent interactions between deuterated monoaromatic compounds (phenol- d 5 , pyridine- d 5 , benzene- d 6 ) and fulvic acids isolated from the Suwannee River and Big Soda Lake. Noncovalent interactions, in aqueous solution, were examined as a function of monoaromatic hydrocarbon functional groups, fulvic acid concentration and identity, and solution pH. Phenol did not exhibit noncovalent interactions with either fulvic acid at any pH. Pyridine, in a pH range from 3 to 8, interacted with Suwannee River fulvic acid, forming a bond involving the lone pair of electrons on nitrogen. Conversely, no interactions were observed between pyridine and Big Soda Lake fulvic acid; the difference in noncovalent interactions is attributed to the structural and chemical differences of the two fulvic acids. The translational and rotational molecular motion of benzene increased in the presence of both fulvic acids, indicating that in aqueous solution, fulvic acids solubilize benzene rather than forming discrete bonds as with pyridine. The results of this study demonstrate that monoaromatic functional groups, solution pH, and identity and concentration of fulvic acid can influence the type and degree of noncovalent interactions with dissolved organic matter.

Teachers in an Interdisciplinary Learning Community: Engaging, Integrating, and Strengthening K-12 Education

This study examines the inputs (processes and strategies) and outputs (perceptions, skill development, classroom transfer, disciplinary integration, social networking, and community development) of a yearlong, interdisciplinary teacher learning and development experience. Eleven secondary math and science teachers partnered with an interdisciplinary team of university engineering mentors in a yearlong engineering education and project implementation program. It consisted of a 6-week on-site resident professional development and collaboration experience, with an ongoing support and follow-up including digital systems. Mixed-method, multisource data indicate that teachers engaged with motivations combining personal, intrinsic interest and classroom integration goals. They formed and sustained an active community of learning and practice that supported their success, on-site and through classroom integration, thereby promoting innovations. Teachers reported positive perceptions throughout the program and demonstrated significant, productive trajectories of change-over-time. Teachers learned and transferred task-specific engineering and scientific skills, as well as more general inquiry-based pedagogical strategies to their secondary classrooms.

Use of benzoate as an electron acceptor by Syntrophus aciditrophicus grown in pure culture with crotonate

In methanogenic environments, the main fate of benzoate is its oxidization to acetate, H(2) and CO(2) by syntrophic associations of hydrogen-producing benzoate degraders and hydrogen-using methanogens. Here, we report the use of benzoate as an electron acceptor. Pure cultures of S. aciditrophicus simultaneously degraded crotonate and benzoate when both substrates were present. The growth rate was 0.007 h(-1) with crotonate and benzoate present compared with 0.025 h(-1) with crotonate alone. After 8 days of incubation, 4.12 +/- 0.50 mM of cyclohexane carboxylate and 8.40 +/- 0.61 mM of acetate were formed and 4.0 +/- 0.04 mM of benzoate and 4.8 +/- 0.5 mM of crotonate were consumed. The molar growth yield was 22.7 +/- 2.1 g (dry wt) of cells per mol of crotonate compared with about 14.0 +/- 0.1 g (dry wt) of cells per mol of crotonate when S. aciditrophicus was grown with crotonate alone. Cultures grown with [ring-(13)C]-benzoate and unlabelled crotonate initially formed [ring-(13)C]-labelled cyclohexane carboxylate. No (13)C-labelled acetate was detected. In addition to cyclohexane carboxylate, (13)C-labelled cyclohex-1-ene carboxylate was detected as an intermediate. Once almost all of the benzoate was gone, carbon isotopic analyses showed that cyclohexane carboxylate was formed from both labelled and non-labelled metabolites. Glutarate and pimelate were also detected at this time and carbon isotopic analyses showed that each was made from a mixture labelled and non-labelled metabolites. The increase in molar growth yield with crotonate and benzoate and the formation of [ring-(13)C]-cyclohexane carboxylate from [ring-(13)C]-benzoate in the presence of crotonate are consistent with benzoate serving as an electron acceptor.

Chapter 10 Anaerobic hydrocarbon biodegradation and the prospects for microbial enhanced energy production

Publisher Summary There is a biotechnological link between oil and natural gas that is the product of the relatively recent recognition that many hydrocarbons are susceptible to anaerobic biodegradation and can be converted into methane and carbon dioxide. Unlike the well-documented patterns of aerobic oil biodegradation, anaerobic hydrocarbon metabolism was dismissed as ecologically insignificant. This chapter reviews evidence for anaerobic hydrocarbon biodegradation and provide an overview of some of the more generalizing metabolic features. It explores whether these reactions can be predicted, identifies some of the implications for the ability of anaerobes to convert hydrocarbons into methane, and thereby, generates useful energy. There is ample evidence that anaerobic microbial processes occur under reservoir conditions. There is even evidence, albeit indirect, that such processes occur in situ . The most widely used indicator for biological methanogenesis comes from the carbon isotopic abundance signature of the methane in natural gas deposits. The chapter ends with a discussion on microbial enhanced energy recovery and carbon dioxide.