Mark C. Hart

Photolysis of iron–siderophore chelates promotes bacterial–algal mutualism

Marine microalgae support world fisheries production and influence climate through various mechanisms. They are also responsible for harmful blooms that adversely impact coastal ecosystems and economies. Optimal growth and survival of many bloom-forming microalgae, including climatically important dinoflagellates and coccolithophores, requires the close association of specific bacterial species, but the reasons for these associations are unknown. Here, we report that several clades of Marinobacter ubiquitously found in close association with dinoflagellates and coccolithophores produce an unusual lower-affinity dicitrate siderophore, vibrioferrin (VF). Fe-VF chelates undergo photolysis at rates that are 10–20 times higher than siderophores produced by free-living marine bacteria, and unlike the latter, the VF photoproduct has no measurable affinity for iron. While both an algal-associated bacterium and a representative dinoflagellate partner, Scrippsiella trochoidea, used iron from Fe-VF chelates in the dark, in situ photolysis of the chelates in the presence of attenuated sunlight increased bacterial iron uptake by 70% and algal uptake by >20-fold. These results suggest that the bacteria promote algal assimilation of iron by facilitating photochemical redox cycling of this critical nutrient. Also, binary culture experiments and genomic evidence suggest that the algal cells release organic molecules that are used by the bacteria for growth. Such mutualistic sharing of iron and fixed carbon has important implications toward our understanding of the close beneficial interactions between marine bacteria and phytoplankton, and the effect of these interactions on algal blooms and climate.

Evaluation of redox indicators and the use of digital scanners and spectrophotometer for quantification of microbial growth in microplates

The growth indicators 2,3,5-triphenyltetrazolium chloride (TTC), 2-[4-iodophenyl]-3-[4-dinitrophenyl]-5-phenyltetrazolium chloride (INT), 2,3-bis[2-methoxy-4-nitro-5-sulfophenyl]-2H-tetrazolium-5-carboxanilide inner salt (XTT), 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT), and resazurin were tested for their ability to indicate bacterial growth/growth inhibition. Two reading devices were evaluated and compared, a microplate spectrophotometer and a digital flatbed scanner. The bacteria used in the study were cultivated in 96-wells microplates and readings were made after 24 h. The scanned pictures were analysed with a software developed in-house to generate numerical values. It was found that resazurin was difficult to use since it shifts between three colours. MTT and TTC had a high correlation between the spectrophotometer data and the data from the scanned images. The reproducibility was similar for both reading devices. In no case was there a need to resuspend the pellets before reading. Both the XTT and INT showed lower correlations. It is concluded that bacterial growth/growth inhibition can be easily and reproducibly measured from microplate cultivations with a flatbed scanner or with a microplate spectrophotometer.

Mitochondrial DNA reveals multiple Northern Hemisphere introductions of Caprella mutica (Crustacea, Amphipoda)

Caprella mutica (Crustacea, Amphipoda) has been widely introduced to non‐native regions in the last 40 years. Its native habitat is sub‐boreal northeast Asia, but in the Northern Hemisphere, it is now found on both coasts of North America, and North Atlantic coastlines of Europe. Direct sequencing of mitochondrial DNA (cytochrome c oxidase subunit I gene) was used to compare genetic variation in native and non‐native populations of C. mutica. These data were used to investigate the invasion history of C. mutica and to test potential source populations in Japan. High diversity (31 haplotypes from 49 individuals), but no phylogeographical structure, was identified in four populations in the putative native range. In contrast, non‐native populations showed reduced genetic diversity (7 haplotypes from 249 individuals) and informative phylogeographical structure. Grouping of C. mutica populations into native, east Pacific, and Atlantic groups explained the most among‐region variation (59%). This indicates independent introduction pathways for C. mutica to the Pacific and Atlantic coasts of North America. Two dominant haplotypes were identified in eastern and western Atlantic coastal populations, indicating several dispersal routes within the Atlantic. The analysis indicated that several introductions from multiple sources were likely to be responsible for the observed global distribution of C. mutica, but the pathways were least well defined among the Atlantic populations. The four sampled populations of C. mutica in Japan could not be identified as the direct source of the non‐native populations examined in this study. The high diversity within the Japan populations indicates that the native range needs to be assessed at a far greater scale, both within and among populations, to accurately assess the source of the global spread of C. mutica.

Microplate-based microbial assay for risk assessment and (eco)toxic fingerprinting of chemicals

Abstract We have developed a multi-species microbial assay, MARA, for assessing the (eco)toxic risks of chemical compounds and for the determination of their toxic fingerprints. The main advantages with MARA are (1) the simultaneous testing on several microbial strains; (2) the concept of toxic fingerprinting; (3) the simple and inexpensive handling and reading of the test. The toxic activity is measured in parallel on 11 different micro-organisms lyophilised in a microplate. A concentration gradient of the chemical to be tested is added and growth is indicated through the reduction of tetrazolium red (TTC). The microplates are read by a common flatbed scanner or a microplate spectrophotometer. The array of the 11 different inhibition values constitute a toxic fingerprint, characteristic for each type of chemical compound, and it is shown that the assay can distinguish between 12 standard chemicals. Both the reproducibility (CV≈20%) and the sensitivity are similar to other toxicity tests based on micro-organisms.

Bacterial Diversity Associated with the Coccolithophorid Algae Emiliania huxleyi and Coccolithus pelagicus f. braarudii

Coccolithophores are unicellular calcifying marine phytoplankton that can form large and conspicuous blooms in the oceans and make significant contributions to oceanic carbon cycling and atmospheric CO2 regulation. Despite their importance, the bacterial diversity associated with these algae has not been explored for ecological or biotechnological reasons. Bacterial membership of Emiliania huxleyi and Coccolithus pelagicus f. braarudii cultures was assessed using cultivation and cultivation-independent methods. The communities were species rich compared to other phytoplankton cultures. Community analysis identified specific taxa which cooccur in all cultures (Marinobacter and Marivita). Hydrocarbon-degrading bacteria were found in all cultures. The presence of Acidobacteria, Acidimicrobidae, Schlegelella, and Thermomonas was unprecedented but were potentially explained by calcification associated with coccolith production. One strain of Acidobacteria was cultivated and is closely related to a marine Acidobacteria isolated from a sponge. From this assessment of the bacterial diversity of coccolithophores, a number of biotechnological opportunities are evident, from bioprospecting for novel taxa such as Acidobacteria to helping understand the relationship between obligate hydrocarbonoclastic bacteria occurrence with phytoplankton and to revealing bacterial taxa that have a specific association with algae and may be suitable candidates as a means to improve the efficiency of mass algal cultivation.

Coupling of dimethylsulfide oxidation to biomass production by a marine flavobacterium

ABSTRACT Dimethylsulfide (DMS) is an important climatically active gas. In the sea, DMS is produced primarily by microbial metabolism of the compatible solute dimethylsulfoniopropionate. Laboratory growth of Bacteroidetes with DMS resulted in its oxidation to dimethyl sulfoxide but only in the presence of glucose. We hypothesized that electrons liberated from sulfur oxidation were used to augment biomass production.

Erratum to “Microplate-based microbial assay for risk assessment and (eco)toxic fingerprinting of chemicals” [Analytica Chimica Acta 485 (2002) 121–130]

Erratum to “Microplate-based microbial assay for risk assessment and (eco)toxic fingerprinting of chemicals” [Analytica Chimica Acta 485 (2002) 121–130] Jenny Gabrielson a,∗, Inger Kuhn a, Patricia Colque-Navarro a, Mark Hart b, Aina Iversen a, Douglas McKenzie c, Roland Mollby a a Microbiology and Tumorbiology Centre, Karolinska Institutet, Box 280, 171 77 Stockholm, Sweden b Dunstaffnage Marine Laboratory, Oban, Argyll, Scotland PA 37 1QA, UK c Integrin Advanced Biosystems, Marine Resource Centre, Barcaldine, Oban, Argyll, Scotland PA 37 1SE, UK