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Dive into the research topics where Mark Farrell is active.

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Featured researches published by Mark Farrell.


Bioresource Technology | 2009

Critical evaluation of municipal solid waste composting and potential compost markets

Mark Farrell; Davey L. Jones

Mechanical biological treatment (MBT) of mixed waste streams is becoming increasingly popular as a method for treating municipal solid waste (MSW). Whilst this process can separate many recyclates from mixed waste, the resultant organic residue can contain high levels of heavy metals and physical and biological contaminants. This review assesses the potential end uses and sustainable markets for this organic residue. Critical evaluation reveals that the best option for using this organic resource is in land remediation and restoration schemes. For example, application of MSW-derived composts at acidic heavy metal contaminated sites has ameliorated soil pollution with minimal risk. We conclude that although MSW-derived composts are of low value, they still represent a valuable resource particularly for use in post-industrial environments. A holistic view should be taken when regulating the use of such composts, taking into account the specific situation of application and the environmental pitfalls of alternative disposal routes.


Science of The Total Environment | 2013

Microbial utilisation Of biochar-derived carbon

Mark Farrell; Thomas K. Kuhn; Lynne M. Macdonald; Todd Maddern; Daniel V. Murphy; Phillip A. Hall; Bhupinder Pal Singh; Karen Baumann; Evelyn S. Krull; Jeff Baldock

Whilst largely considered an inert material, biochar has been documented to contain a small yet significant fraction of microbially available labile organic carbon (C). Biochar addition to soil has also been reported to alter soil microbial community structure, and to both stimulate and retard the decomposition of native soil organic matter (SOM). We conducted a short-term incubation experiment using two (13)C-labelled biochars produced from wheat or eucalypt shoots, which were incorporated in an aridic arenosol to examine the fate of the labile fraction of biochar-C through the microbial community. This was achieved using compound specific isotopic analysis (CSIA) of phospholipid fatty acids (PLFAs). A proportion of the biologically-available fraction of both biochars was rapidly (within three days) utilised by gram positive bacteria. There was a sharp peak in CO2 evolution shortly after biochar addition, resulting from rapid turnover of labile C components in biochars and through positive priming of native SOM. Our results demonstrate that this CO2 evolution was at least partially microbially mediated, and that biochar application to soil can cause significant and rapid changes in the soil microbial community; likely due to addition of labile C and increases in soil pH.


PLOS ONE | 2011

Acquisition and assimilation of nitrogen as peptide-bound and D-enantiomers of amino acids by wheat.

Paul W. Hill; Richard S. Quilliam; Thomas H. DeLuca; John Farrar; Mark Farrell; Paula Roberts; Kevin K. Newsham; David W. Hopkins; Richard D. Bardgett; Davey L. Jones

Nitrogen is a key regulator of primary productivity in many terrestrial ecosystems. Historically, only inorganic N (NH4 + and NO3 -) and L-amino acids have been considered to be important to the N nutrition of terrestrial plants. However, amino acids are also present in soil as small peptides and in D-enantiomeric form. We compared the uptake and assimilation of N as free amino acid and short homopeptide in both L- and D-enantiomeric forms. Sterile roots of wheat (Triticum aestivum L.) plants were exposed to solutions containing either 14C-labelled L-alanine, D-alanine, L-trialanine or D-trialanine at a concentration likely to be found in soil solution (10 µM). Over 5 h, plants took up L-alanine, D-alanine and L-trialanine at rates of 0.9±0.3, 0.3±0.06 and 0.3±0.04 µmol g−1 root DW h−1, respectively. The rate of N uptake as L-trialanine was the same as that as L-alanine. Plants lost ca.60% of amino acid C taken up in respiration, regardless of the enantiomeric form, but more (ca.80%) of the L-trialanine C than amino acid C was respired. When supplied in solutions of mixed N form, N uptake as D-alanine was ca.5-fold faster than as NO3 -, but slower than as L-alanine, L-trialanine and NH4 +. Plants showed a limited capacity to take up D-trialanine (0.04±0.03 µmol g−1 root DW h−1), but did not appear to be able to metabolise it. We conclude that wheat is able to utilise L-peptide and D-amino acid N at rates comparable to those of N forms of acknowledged importance, namely L-amino acids and inorganic N. This is true even when solutes are supplied at realistic soil concentrations and when other forms of N are available. We suggest that it may be necessary to reconsider which forms of soil N are important in the terrestrial N cycle.


Environmental Pollution | 2010

Migration of heavy metals in soil as influenced by compost amendments

Mark Farrell; William T. Perkins; P. Hobbs; Gareth W. Griffith; Davey L. Jones

Soils contaminated with heavy metals can pose a major risk to freshwaters and food chains. In this study, the success of organic and inorganic intervention strategies to alleviate toxicity in a highly acidic soil heavily contaminated with As, Cu, Pb, and Zn was evaluated over 112 d in a mesocosm trial. Amelioration of metal toxicity was assessed by measuring changes in soil solution chemistry, metal leaching, plant growth, and foliar metal accumulation. Either green waste- or MSW-derived composts increased plant yield and rooting depth, reduced plant metal uptake, and raised the pH and nutrient status of the soil. We conclude that composts are well suited for promoting the re-vegetation of contaminated sites; however, care must be taken to ensure that very short-term leaching pulses of heavy metals induced by compost amendment are not of sufficient magnitude to cause contamination of the wider environment.


Bioresource Technology | 2009

Heavy metal contamination of a mixed waste compost: metal speciation and fate.

Mark Farrell; Davey L. Jones

The aims of this study were to assess changes in heavy metal availability in two contrasting feedstocks during aerobic composting, and the availability of said metals in the finished composts. A high C-to-N ratio mixed biodegradable municipal solid waste (MSW) feedstock was successfully composted on its own and in combination with green waste. Changes in heavy metal speciation throughout the composting process were studied using the modified BCR sequential extraction protocol. It was found that total Cu, Pb and Zn concentrations increased over time due to the progressive mineralization of the compost feedstock. Metals were fractionated differently within the two feedstocks, although only Cu showed significant redistribution (mostly to the oxidisable fraction) over the 5 month composting period. The MSW-derived composts performed comparably with other commercially-available composts in a series of plant growth trials. Plant metal accumulation was not influenced by the heavy metals present in the MSW-derived compost implying that they are not plant available. It is recommended that these relatively low value/quality composts may be used for remediation of acidic heavy metal contaminated sites.


Environmental Microbiology | 2015

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

Alexandre B. de Menezes; Miranda Prendergast-Miller; Alan E. Richardson; Peter J. Toscas; Mark Farrell; Lynne M. Macdonald; Geoff Baker; Tim Wark; Peter H. Thrall

Network and multivariate statistical analyses were performed to determine interactions between bacterial and fungal community terminal restriction length polymorphisms as well as soil properties in paired woodland and pasture sites. Canonical correspondence analysis (CCA) revealed that shifts in woodland community composition correlated with soil dissolved organic carbon, while changes in pasture community composition correlated with moisture, nitrogen and phosphorus. Weighted correlation network analysis detected two distinct microbial modules per land use. Bacterial and fungal ribotypes did not group separately, rather all modules comprised of both bacterial and fungal ribotypes. Woodland modules had a similar fungal : bacterial ribotype ratio, while in the pasture, one module was fungal dominated. There was no correspondence between pasture and woodland modules in their ribotype composition. The modules had different relationships to soil variables, and these contrasts were not detected without the use of network analysis. This study demonstrated that fungi and bacteria, components of the soil microbial communities usually treated as separate functional groups as in a CCA approach, were co-correlated and formed distinct associations in these adjacent habitats. Understanding these distinct modular associations may shed more light on their niche space in the soil environment, and allow a more realistic description of soil microbial ecology and function.


Waste Management | 2010

Food waste composting: Its use as a peat replacement

Mark Farrell; Davey L. Jones

We successfully co-composted catering waste with green waste and shredded paper to yield two high-nitrogen composts for use in horticulture. Sunflowers (Helianthus annuus L.) were grown in various mixtures of the compost and a commercially available peat-based compost to assess the efficacy of catering waste-based composts for peat replacement. Height, head diameter, seed mass and above-ground biomass were measured, with all mixtures giving a significant increase in yield or size over the commercially available peat-free control compost. We conclude that differences in physical structure governed sunflower growth over substrate chemistry, and none of the compost mixtures were nutrient deficient. We recommend that catering waste co-compost can be substituted to at least 75% within Sphagnum-based traditional growing media, providing a viable replacement for a large proportion of peat used as a growth medium in the horticulture industry. Our catering waste compost yielded similar seed head, seed mass and above-ground biomass values to 100% peat-based compost in all food waste compost blends tested in this study.


Journal of Hazardous Materials | 2013

Difficulties in using soil-based methods to assess plant availability of potentially toxic elements in biochars and their feedstocks

Mark Farrell; Glen Rangott; Evelyn S. Krull

The use of biochars in agriculture to improve soil function and carbon sequestration is expected to increase into the future. We aimed to identify the most suitable chemical extractants for the risk assessment of potentially toxic element (PTE) availability in biochars produced from a range of feedstocks, and to investigate the changes in PTE extractability that occur as a result of feedstock pyrolysis using five common extraction methods. We evaluated these methods with regard to their ability to predict PTE phytoavailability in four different biochars against metal uptake by wheat. No single extractant significantly correlated well with ≥ 4 PTEs from the 10 examined, highlighting that the availability and binding mechanism of individual PTEs differed by biochar type. Commonly used PTE extraction methods need to be reviewed for use with biochars, and that some biochars may be able to stabilise PTEs, reducing risks of contamination upon land application.


FEMS Microbiology Ecology | 2010

Microbial diversity and activity are increased by compost amendment of metal-contaminated soil

Mark Farrell; Gareth W. Griffith; P. Hobbs; William T. Perkins; Davey L. Jones

Unlike organic pollutants, heavy metals cannot be degraded and can constitute a persistent environmental hazard. Here, we investigated the success of different remediation strategies in promoting microbial diversity and function with depth in an acidic soil heavily contaminated with Cu, Pb and Zn. Remediation involved the incorporation of either a high- or a low-quality compost or inorganic fertilizer into the topsoil and monitoring of microbial activity and diversity with soil depth over a 4-month period. While changes in topsoil microbial activity were expected, the possible effects on the subsurface microbial community due to the downward movement of metals, nutrients and/or soluble organic matter have not been examined previously. The results showed that both compost additions, especially the low-quality compost, resulted in significantly increased bacterial and fungal diversity (as assessed by terminal restriction fragment length polymorphism) and activity compared with the inorganic and control treatments in the topsoil. Although phospholipid fatty acid profiling indicated that compost addition had promoted enhanced microbial diversity in the subsoil, no concomitant increase in subsoil microbial activity was observed, suggesting that amelioration of the heavy metals remained localized in the topsoil. We conclude that although composts can successfully immobilize heavy metals and promote ecosystem diversity/function, surface incorporation had little remedial effect below the surface layer over the course of our short-term trial.


Journal of Colloid and Interface Science | 2014

Influence of mineral characteristics on the retention of low molecular weight organic compounds: a batch sorption-desorption and ATR-FTIR study.

Sabina Yeasmin; Balwant Singh; Rai S. Kookana; Mark Farrell; Donald L. Sparks; Cliff T. Johnston

Batch experiments were conducted to evaluate the sorption-desorption behaviour of (14)C-labelled carboxylic acids (citric and oxalic) and amino acids (glutamic, alanine, phenylalanine and lysine) on pure minerals (kaolinite, illite, montmorillonite, ferrihydrite and goethite). The sorption experiments were complemented by ATR-FTIR spectroscopy to gain possible mechanistic insight into the organic acids-mineral interactions. In terms of charge, the organic solutes ranged from strongly negative (i.e., citric) to positively charged solutes (i.e., lysine); similarly the mineral phases also ranged from positively to negatively charged surfaces. In general, sorption of anionic carboxylic and glutamic acids was higher compared to the other compounds (except lysine). Cationic lysine showed a stronger affinity to permanently charged phyllosilicates than Fe oxides. The sorption of alanine and phenylalanine was consistently low for all minerals, with relatively higher sorption and lower desorption of phenylalanine than alanine. Overall, the role of carboxylic functional groups for the sorption and retention of these carboxylic and amino acids on Fe oxides (and kaolinite) and of amino group on 2:1 phyllosilicates was noticeable. Mineral properties (surface chemistry, specific surface area), chemistry of the organic compounds (pKa value, functional groups) and the equilibrium pH of the system together controlled the differences in sorption-desorption patterns. The results of this study aid to understand the effects of mineralogical and chemical factors that affect naturally occurring low molecular weight organic compounds sorption under field conditions.

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Lynne M. Macdonald

Commonwealth Scientific and Industrial Research Organisation

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Jeff Baldock

Commonwealth Scientific and Industrial Research Organisation

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Alexandre B. de Menezes

Commonwealth Scientific and Industrial Research Organisation

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Miranda Prendergast-Miller

Commonwealth Scientific and Industrial Research Organisation

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Alan E. Richardson

Commonwealth Scientific and Industrial Research Organisation

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