Mark W. Schwinghamer

Two novel mastreviruses from chickpea (Cicer arietinum) in Australia

Two novel mastreviruses (genus Mastrevirus; family Geminiviridae), with proposed names chickpea chlorosis virus (CpCV) and chickpea redleaf virus, are described from chickpea (Cicer arietinum) from eastern Australia. The viruses have genomes of 2,582 and 2,605 nucleotides, respectively, and share similar features and organisation with typical dicot-infecting mastreviruses. Two distinct strains of CpCV were suggested by phylogenetic analysis. Additionally, a partial mastrevirus Rep sequence from turnip weed (Rapistrum rugosum) indicated the presence of a distinct strain of Tobacco yellow dwarf virus (TYDV). In phylogenetic analyses, isolates of Bean yellow dwarf virus, Chickpea chlorotic dwarf Pakistan virus and Chickpea chlorotic dwarf Sudan virus from southern and northern Africa and south-central and western Asia clustered separately from these three viruses from Australia. An Australian, eastern Asian, or south-eastern Asian origin for the novel mastreviruses and TYDV is discussed.

Evidence that dicot-infecting mastreviruses are particularly prone to inter-species recombination and have likely been circulating in Australia for longer than in Africa and the Middle East

Viruses of the genus Mastrevirus (family Geminiviridae) are transmitted by leafhoppers and infect either mono- or dicotyledonous plants. Here we have determined the full length sequences of 49 dicot-infecting mastrevirus isolates sampled in Australia, Eritrea, India, Iran, Pakistan, Syria, Turkey and Yemen. Comprehensive analysis of all available dicot-infecting mastrevirus sequences showed the diversity of these viruses in Australia to be greater than in the rest of their known range, consistent with earlier studies, and that, in contrast with the situation in monocot-infecting mastreviruses, detected inter-species recombination events outnumbered intra-species recombination events. Consistent with Australia having the greatest diversity of known dicot-infecting mastreviruses phylogeographic analyses indicating the most plausible scheme for the spread of these viruses to their present locations, suggest that most recent common ancestor of these viruses is likely nearer Australia than it is to the other regions investigated.

Phylodynamic evidence of the migration of turnip mosaic potyvirus from Europe to Australia and New Zealand

Turnip mosaic virus (TuMV) is a potyvirus that is transmitted by aphids and infects a wide range of plant species. We investigated the evolution of this pathogen by collecting 32 isolates of TuMV, mostly from Brassicaceae plants, in Australia and New Zealand. We performed a variety of sequence-based phylogenetic and population genetic analyses of the complete genomic sequences and of three non-recombinogenic regions of those sequences. The substitution rates, divergence times and phylogeographical patterns of the virus populations were estimated. Six inter- and seven intralineage recombination-type patterns were found in the genomes of the Australian and New Zealand isolates, and all were novel. Only one recombination-type pattern has been found in both countries. The Australian and New Zealand populations were genetically different, and were different from the European and Asian populations. Our Bayesian coalescent analyses, based on a combination of novel and published sequence data from three non-recombinogenic protein-encoding regions, showed that TuMV probably started to migrate from Europe to Australia and New Zealand more than 80 years ago, and that distinct populations arose as a result of evolutionary drivers such as recombination. The basal-B2 subpopulation in Australia and New Zealand seems to be older than those of the world-B2 and -B3 populations. To our knowledge, our study presents the first population genetic analysis of TuMV in Australia and New Zealand. We have shown that the time of migration of TuMV correlates well with the establishment of agriculture and migration of Europeans to these countries.

Mastreviruses in chickpea (Cicer arietinum) and other dicotyledonous crops and weeds in Queensland and northern New South Wales, Australia.

Natural infection by mastreviruses was investigated in chickpea (Cicer arietinum) and other dicotyledonous crops and weeds in grain production areas of Queensland and northern New South Wales, Australia, from 2000 to 2005. Altogether, 33 639 plants comprising 31 species and 10 dicot families were screened for infection by a tissue-blot immunoassay that did not distinguish between mastrevirus strains or species. Nine plant species in three families were identified as natural hosts. Chickpea was infected throughout the region although infection incidence did not exceed 5%. Infection was rare in faba bean (Vicia faba), canola (Brassica napus), and mustard (B. juncea) and not detected in field pea (Pisum sativum). Infection of chickpea and turnip weed (Rapistrum rugosum) was confirmed by immunocapture polymerase chain reaction (IC-PCR) with primers generic for dicot-infecting mastreviruses, and also immunosorbent electron microscopy and graft transmission in the case of chickpea. Individual mastreviruses were identified by comparing their IC-PCR amplicons by a combination of methods. Among 42 isolates from 41 chickpea plants, one was typical Tobacco yellow dwarf virus (TYDV) and the others were three recently distinguished strains including two proposed novel species: 34 Chickpea chlorosis virus strain A, six Chickpea chlorosis virus strain B, and one Chickpea redleaf virus. All of 10 isolates from 10 turnip weed plants were TYDV-B, a strain distinct from typical TYDV. The symptoms associated with mastrevirus infection in chickpea included foliar chlorosis or reddening, stunting, and usually phloem browning. The potential for losses in winter and summer grown field crops is discussed.

First report of Tomato spotted wilt virus in chickpea (Cicer arietinum) in Australia.

Tomato spotted wilt virus (genus Tospovirus) is recorded on chickpea (Cicer arietinum) in Australia for the first time. It caused shoot tip symptoms of wilting, necrosis, bunching and chlorosis, followed by premature death of plants.

First record of natural infection of chickpea by Turnip mosaic virus

Turnip mosaic virus (TuMV) was identified in chickpea (Cicer arietinum) plants with tip wilting symptoms in a commercial crop in northern New South Wales, Australia. This is a new disease record for chickpea worldwide as well as for legumes in Australia. Koch’s postulates were satisfied for TuMV as a cause of the tip wilting in chickpea.

Turnip mosaic virus : potential for crop losses in the grain belt of New South Wales, Australia

The potential of Turnip mosaic virus (TuMV) to infect and damage cool season crops in the grain belt of New South Wales, Australia, was investigated by serological tests on 24,689 dicot weed, grain, and forage specimens from 1999 to 2007 and infectivity/pathogenicity tests with six isolates. Natural infection by TuMV was common in Brassicaceae weeds. Infected grain crops included mustard (Brassica juncea), field pea (Pisum sativum), chickpea (Cicer arietinum), and coriander (Coriandrum sativum). Forage (turnip, Brassica rapa) was also infected. None of 9,816 canola (Brassica napus, at least 19 cultivars) or 1,967 faba bean (Vicia faba, three cultivars) plants were infected. Six isolates from weeds, mustard, and chickpea were inoculated on a range of weed and crop species including four B. napus pathotype differential lines. Inoculated Brassicaceae weeds, mustard, field pea cv. ‘Cressy Blue’, coriander, Chinese cabbage (B. rapa), and forage turnip (B. rapa) were usually infected. Field pea cv. Dundale and radishes (Raphanus sativus) were infected infrequently. Symptoms were severe in mustard, forage turnip, chickpea, and field pea. The reportedly susceptible canola cv. ‘Outback’ displayed only variable infectivity and mild symptoms for five isolates and no infectivity for one isolate. Faba bean, field pea cv. ‘Excell’, and two B. napus differentials appeared to be non-hosts. The results suggest that TuMV strains naturalised in Brassicaceae weeds in NSW in 1999–2007 could damage mustard, field pea, and forage turnip, but not canola or faba bean. These NSW strains appeared to be distinct from strains that damage canola in Europe, North America, and Asia.

Three aphid vectors of faba bean (Vicia faba) viruses in northern New South Wales and occurrence of Acyrthosiphon pisum-transmitted isolates of Soybean dwarf virus.

Aphid-transmitted virus diseases are a constraint on production of faba bean (Vicia faba) and other cool season grain legumes in northern New South Wales (NSW), Australia. A field study in 2004 identified potentially important aphid vectors of viruses that infect faba bean. Individual alatae were trapped on vertical nets in four field situations and placed immediately on bioassay plants (faba bean seedlings) to identify viruses transmitted in persistent and non-persistent manners. Viruses were identified by nine virus-specific tissue blot immunoassays (TBIAs). Out of a total of 447 individual alatae comprising 14 species, 10 individuals comprising three aphid species transmitted a virus: five Acyrthosiphon pisum (two that transmitted Bean leafroll virus, two Bean yellow mosaic virus, and one Soybean dwarf virus, SbDV), four Aphis craccivora (all Beet western yellows virus, BWYV), and one Myzus persicae (BWYV). No transmissions were detected for the other 11 aphid species, including the faba bean colonising species Acyrthosiphon kondoi, although virus-like symptoms were observed in some cases. None of the alatae transmitted Subterranean clover stunt virus, Alfalfa mosaic virus, Cucumber mosaic virus, Pea seed-borne mosaic virus, or Turnip mosaic virus. In separate tests in which acquisition fed apterae were used to inoculate faba bean, A. pisum was able to transmit four additional isolates of SbDV from chickpea or subterranean clover from Queensland, Tasmania, and NSW. The potential importance of A. pisum, A. craccivora, and M. persicae as vectors is discussed. Of these, A. pisum appears the most likely to cause crop losses in faba bean based on propensity as a vector, numbers trapped, efficient colonisation, and severity of virus isolates transmitted.