Markus Wiesner

Tripeptides as Efficient Asymmetric Catalysts for 1,4-Addition Reactions of Aldehydes to Nitroolefins–A Rational Approach†

Peptides have become increasingly popular as asymmetric catalysts for a range of reactions. Features such as facile synthesis, modularity, and often high selectivity and activity render peptidic catalysts attractive alternatives to metal-based catalysts and other organocatalysts. One of the largest challenges in the development of peptidic catalysts is the prediction and incorporation of desirable catalytic properties into a given peptide. This is already a challenge for small rigid organocatalysts, but even more so for short peptidic catalysts bearing many more degrees of rotational freedom. As a result, combinatorial chemistry has proven to be a valuable tool for the identification of peptidic catalysts. In this study we used insight gained from conformational analysis to guide the development of tripeptides as efficient asymmetric catalysts for conjugate addition reactions of aldehydes to nitroolefins. Recently, we introduced the peptide H-Pro-Pro-AspNH2 (1) as a catalyst for direct asymmetric aldol

Peptide Catalyzed Asymmetric Conjugate Addition Reactions of Aldehydes to Nitroethylene—A Convenient Entry into γ2-Amino Acids

The peptide H-D-Pro-Pro-Glu-NH2 is a highly effective catalyst for conjugate addition reactions between aldehydes and nitroethylene. Only 1 mol % of H-d-Pro-Pro-Glu-NH2 and a 1.5-fold excess of aldehyde with respect to nitroethylene suffice to obtain gamma-nitroaldehydes and, after reduction, monosubstituted gamma-nitroalcohols in excellent yields and optical purities. The products can be readily converted into gamma2-amino acids, thereby opening an effective direct entry into this important class of compounds.

Enamine Catalysis with Low Catalyst Loadings - High Efficiency via Kinetic Studies

Kinetic studies on enamine catalysis provided insight into the rate determining step(s) of peptide catalyzed conjugate addition reactions between aldehydes and nitroolefins. They demonstrate that not enamine formation but both the reaction of the enamine with the electrophile and hydrolysis of the resulting imine are rate limiting. These results allowed for reducing the catalyst loading by a factor of 10 to as little as 0.1 mol %. This is the lowest catalyst loading that has been achieved so far in enamine catalysis with low molecular weight catalysts for a broad range of substrates.

Tripeptides of the type H-D-Pro-Pro-Xaa-NH2 as catalysts for asymmetric 1,4-addition reactions : structural requirements for high catalytic efficiency

Analysis of the structural and functional requirements within the asymmetric peptidic catalyst H-D-Pro-Pro-Asp-NH(2) led to the development of the closely related peptide H-D-Pro-Pro-Glu-NH(2) as an even more efficient catalyst for asymmetric conjugate addition reactions of aldehydes to nitroolefins. In the presence of as little as 1 mol % of H-D-Pro-Pro-Glu-NH(2), a broad range of aldehydes and nitroolefins react readily with each other. The resulting gamma-nitroaldehydes were obtained in excellent yields and stereoselectivities at room temperature. Within the structure of the peptidic catalysts, the D-Pro-Pro motif is the major contributor to the high stereoselectivities. The C-terminal amide and the spacer to the carboxylic acid in the side-chain of the C-terminal amino acid are responsible for the fine-tuning of the stereoselectivity. The peptidic catalysts not only allow for highly effective asymmetric catalysis under mild conditions, but also function in the absence of additives.

Separating stereoisomers of di‐, tri‐, and tetrapeptides using capillary electrophoresis with contactless conductivity detection

The separation and detection of small oligopeptides in CE with contactless conductivity detection were demonstrated. A strongly acidic separation buffer (0.5 M acetic acid) was employed in order to render the species cationic. Separation of the stereoisomers was achieved in typically 10-15 min by using either dimethyl-beta-CD (DM-beta-CD), (+)-(18-crown-6)-2,3,11,12-tetracarboxylic acid (18C(6)H(4)), a combination of the two substances, or of histidine, as buffer additives. Calibration curves were determined for isomers of Gly-Asp and H-Pro-Asp-NH(2), in the range of 0.05-0.5 mM and 0.1-1 mM, respectively, and were found to be linear. LODs were determined to be in the order of 1.0 microM. The determination of isomeric impurities down to about 1% was found possible. Species showing good separation could also be successfully determined on an electrophoretic lab-on-chip device, with analysis times of a few minutes.

Effects of internal and external carboxylic acids on the reaction pathway of organocatalytic 1,4-addition reactions between aldehydes and nitroolefins

Kinetic and NMR spectroscopic studies revealed that the reaction pathway of conjugate addition reactions between aldehydes and nitroolefins depends on the presence or absence of a suitably positioned carboxylic acid group within the catalyst. The intermediate nitronate is trapped intramolecularly either by protonation (in the presence of a well positioned intramolecular carboxylic acid) or by C–C bond formation to a cyclobutane intermediate (in the absence of an intramolecular proton donor). These differences in the reaction pathway are reflected in different rate limiting steps of the reaction. The studies demonstrated that the preferred reaction pathway and thereby the rate limiting steps of the reaction can be influenced by additives of different acidity or the position of an intramolecular carboxylic acid group within the catalyst.

Porphyrin-DNA: A Supramolecular Scaffold for Functional Molecules on the Nanometre Scale

We are pursuing the aim to use DNA as a supramolecular scaffold for the creation of electronically functional molecules on the nanometre scale. Here, we give a review on our results on porphyrin modified nucleotides used for this purpose. A general synthetic route to porphyrin-nucleotides has been devised, and the building blocks can be incorporated into oligonucleotides using standard solid phase synthesis methods. Up to 11 porphyrins were incorporated into DNA, reaching a length of approximately 4 nm in the array. The spectroscopic data are consistent with a porphyrin induced secondary structure stabilisation in the single strands.

Tetranucleotides as a scaffold for diporphyrin arrays

The incorporation of porphyrin-substituted nucleosides into tetranucleotides using phosphoramidite chemistry on solid support is reported. Both diphenyl and tetraphenyl porphyrin nucleosides were used as building blocks. This method allows the synthesis of chiral homo- and heteroporphyrinic arrays, where the composition and thus the physical properties of the array can be modulated simply by reprogramming the DNA synthesizer. The porphyrin arrays are initially isolated in the free-base form. Remetallation to give the zinc-porphyrins can be achieved using standard procedures in solution. The UV-vis spectra of the arrays are reproducible by a superposition of the absorbance spectra of the individual porphyrins, indicating an undisturbed electronic ground state of the porphyrins in the arrays. The same is true for the steady-state emission spectra of the homoporphyrinic arrays, which are not influenced by the presence of the nucleotide strand. In the mixed porphyrin arrays, large differences in the excited-state properties compared to an equimolar mixture of the building blocks are observed by means that the emission of the diphenyl porphyrin moiety is quenched to a large extent, and the overall emission is dominated by the tetraphenyl porphyrin. The covalent connection of the porphyrins via the DNA-derived backbone therefore substantially alters the excited-state and energy-transfer properties of mixed porphyrin systems. The circular dichroism (CD) spectra show induced negative cotton effects in the region of the porphyrin B-band absorption, which is due to the attachment of the chromophores to the chiral oligonucleotide backbone. Addition of a complementary tetra-adenosine did not alter any of the spectroscopic properties, neither in chloroform nor in acetonitrile solutions. Therefore, it can be concluded that no duplex is formed, which is corroborated by 1H NMR spectroscopy.

Conformational Properties of a Peptidic Catalyst: Insights from NMR Spectroscopic Studies

Peptides have become valuable as catalysts for a variety of different reactions, but little is known about the conformational properties of peptidic catalysts. We investigated the conformation of the peptide H-dPro-Pro-Glu-NH2, a highly reactive and stereoselective catalyst for conjugate addition reactions, and the corresponding enamine intermediate in solution by NMR spectroscopy and computational methods. The combination of nuclear Overhauser effects (NOEs), residual dipolar couplings (RDCs), J-couplings, and temperature coefficients revealed that the tripeptide adopts a single predominant conformation in its ground state. The structure is a type I β-turn, which gains stabilization from three hydrogen bonds that are cooperatively formed between all functional groups (secondary amine, carboxylic acid, amides) within the tripeptide. In contrast, the conformation of the enamine intermediate is significantly more flexible. The conformational ensemble of the enamine is still dominated by the β-turn, but the backbone and the side chain of the glutamic acid residue are more dynamic. The key to the switch between rigidity and flexibility of the peptidic catalyst is the CO2H group in the side chain of the glutamic acid residue, which acts as a lid that can open and close. As a result, the peptidic catalyst is able to adapt to the structural requirements of the intermediates and transition states of the catalytic cycle. These insights might explain the robustness and high reactivity of the peptidic catalyst, which exceeds that of other secondary amine-based organocatalysts. The data suggest that a balance between rigidity and flexibility, which is reminiscent of the dynamic nature of enzymes, is beneficial for peptidic catalysts and other synthetic catalysts.