Marta Heroldová

Detection of shrew-borne hantavirus in Eurasian pygmy shrew (Sorex minutus) in Central Europe

Recently, it was found that not only rodents but also shrews are reservoir hosts of hantaviruses. In Central Europe, only Seewis virus, associated with the Eurasian common shrew (Sorex araneus), has been recognized until now. In the present report, tissue samples from shrews belonging to Crocidurinae and Soricinae subfamilies, trapped in Czech Republic, Germany, and Slovakia, were screened for the presence of novel hantaviruses. Three new hantavirus partial L-segment sequences were obtained from pygmy shrews (Sorex minutus) trapped in Czech Republic and Germany. Complete nucleocapsid protein- and glycoprotein precursor-coding S- and M-segment sequences were then determined for the newly recognized hantavirus strains, CZ/Beskydy/412/2010/Sm, CZ/Drahany/420/2010/Sm, and DE/Dürrbach/1912/2009/Sm. Phylogenetic analyses showed that they represent strains of Asikkala virus (ASIV), a novel hantavirus also found in pygmy shrews from Finland. Our study reveals a broad geographic distribution of ASIV across Europe and indicates pygmy shrew as the primary reservoir host. Future studies will have to determine the pathogenic relevance of ASIV.

Age variation in a fluctuating population of the common vole

We analysed variation in age in a fluctuating population of the common vole (Microtus arvalis) in southern Moravia, Czech Republic, to test the assumption of the senescence hypothesis that the age of voles increases with increasing population density. Between 1996 and 1998, we monitored the demographic changes by snap-trapping and live-trapping in a field population passing through the increase, peak and decline phase of the population cycle. We used the eye lens mass method to determine the age of snap-trapped animals and those that died in live-traps. The average age of winter males was clearly higher after the peak phase breeding season than before it. No such phase-dependent shift in age, however, was observed in the female component. Male age continued to increase from autumn to spring over the pre-peak winter, and the highest age was in spring of the peak phase year. However, after the peak phase breeding season the highest age was achieved in winter, with the decline phase males during the next spring tending to be younger. The average age of females in spring populations was always lower than in winter populations. The average age of voles from live-traps was always higher than voles from snap-traps, particularly in winter and spring populations, suggesting the presence of senescent animals. Although the density-dependent changes in age are consistent with those observed for other voles, they provide only weak evidence that population cycles in the common vole are accompanied by pronounced shifts in individual age, particularly in female voles.

Conspicuous demographic and individual changes in a population of the common vole in a set-aside alfalfa field

The termination of agricultural production in intensively managed fields leads to the succession of weed communities and to changes in the vegetation cover and food supply for animals. We studied a population of the common vole on a regularly managed alfalfa field in southern Moravia (Czech Republic) during two and a half consecutive years. When the field was set aside, the vegetation cover transformed significantly and we studied the same vole population for the next three years. Multi-annual variation in population size disappeared; maximal abundances decreased, and mean body size tended to be lower in the weed-filled habitat. We observed conspicuous seasonal patterns in the proportion of breeding females, sex ratio and in litter size variation; however these patterns did not depend on the field management regime. The set-aside field had a strong effect on vole population dynamics; however, other well-designed studies are needed to distinguish between the possible causal processes (immigration, natality or survival) of the observed changes.

Distribution of the common hamster in the Czech Republic after 2000: retreating to optimum lowland habitats

Abstract. Abundances of the common hamster in western Europe declined dramatically over the last 30 years. Recently, severe restrictions in distribution range have also been reported from central European countries. Here we update knowledge of the hamster distribution range in the Czech Republic based on information from six independent sources: (1) monitoring programme for the common vole carried out by State Phytosanitary Administration, (2) monitoring carried out directly by us, (3) questionnaire data from farming companies, (4) questionnaire data from district museums, (5) data from a public server BioLib for mapping species distribution, and (6) observations from nonrelated research activities and persons taking interest in hamsters. The comparison of locations detected after 2000 with those from the last survey > 30 years ago suggests that the range is severely reduced with hamsters retreating to the optimum lowland habitats along large rivers. These results suggest that the demographic mechanisms causing population decline in western populations operate in central Europe as well.

Tula virus in populations of small terrestrial mammals in a rural landscape.

Over 5 years (2000-2004), populations of small mammals from a rural landscape in southern Moravia (Czech Republic) were investigated for the presence of Tula virus (TULV) antigen using the ELISA set Hantagnost. In total, 1566 individuals from 10 species were examined. The prevalence in the common vole (Microtus arvalis Pallas 1778), the main reservoir of TULV, was 10% (n = 871). The prevalence of TULV antigen increases with its population numbers. The highest number of TULV antigen-positive common voles was found in set-aside plots and winter crops, such as rape and winter wheat. All these habitats are important for common vole overwintering. Older and heavier individuals were more often hantavirus antigen positive. From the other small mammal species, 186 pygmy field mice (Apodemus uralensis Pallas, 1811) were examined, of which 3 were positive, which represents the first hantavirus antigen positive record for this species, and of 195 wood mice (Apodemus sylvaticus Linnaeus, 1758) only 1 was positive. The remaining five rodent species (Apodemus flavicollis Melchior, 1834, Mus musculus Linnaeus, 1758, Micromys minutus Pallas, 1771, Myodes glareolus Schreber, 1780, Microtus subterraneus de Sélys-Longchamps, 1836) and two Soricomorpha (Sorex araneus Linnaeus, 1758, Sorex minutus Linnaeus, 1766) were hantavirus antigen negative.

Rodent Damage to Natural and Replanted Mountain Forest Regeneration

Impact of small rodents on mountain forest regeneration was studied in National Nature Reserve in the Beskydy Mountains (Czech Republic). A considerable amount of bark damage was found on young trees (20%) in spring after the peak abundance of field voles (Microtus agrestis) in combination with long winter with heavy snowfall. In contrast, little damage to young trees was noted under high densities of bank voles (Myodes glareolus) with a lower snow cover the following winter. The bark of deciduous trees was more attractive to voles (22% damaged) than conifers (8%). Young trees growing in open and grassy localities suffered more damage from voles than those under canopy of forest stands (χ 2 = 44.04, P < 0.001). Natural regeneration in Nature Reserve was less damaged compared to planted trees (χ 2 = 55.89, P < 0.001). The main factors influencing the impact of rodent species on tree regeneration were open, grassy habitat conditions, higher abundance of vole species, tree species preferences- and snow-cover condition. Under these conditions, the impact of rodents on forest regeneration can be predicted. Foresters should prefer natural regeneration to the artificial plantings.

The dynamics of nitrogenous substances in rodent diet in a forest environment

Abstract We examined the changes in the amount of nitrogenous substances in 1497 stomachs of four small forest rodent species [yellow-necked mouse (Apodemus flavicollis), wood mouse (Apodemus sylvaticus), bank vole (Clethrionomys glareolus), and common vole (Microtus arvalis)] using near-infrared reflectance spectroscopy (NIRS). The amount of nitrogenous substances varied from 9.31% to 65.39% of dry matter. Significant differences were observed between species, with both Apodemus species displaying higher variability and higher mean nitrogenous substance content in the diet compared with M. arvalis. Results for C. glareolus were intermediate for both variability and mean value. In general, concentrations of nitrogenous substances were higher in the diet of juveniles. Differences in diet composition (or ratio of nitrogenous substance) in different biotopes were only demonstrated for C. glareolus. Moreover, C. glareolus diet varied within the same biotope over different years. Clethrionomys glareolus was the only species to display differences in diet between males and females, with males having higher nitrogen concentrations. These findings are in agreement with the C. glareolus broad dietary niche. This study confirmed the suitability of NIRS for determining nitrogenous substance content in the diet of small rodent species.

Wild rodents and shrews are natural hosts of Staphylococcus aureus

Laboratory mice are the most commonly used animal model for Staphylococcus aureus infection studies. We have previously shown that laboratory mice from global vendors are frequently colonized with S. aureus. Laboratory mice originate from wild house mice. Hence, we investigated whether wild rodents, including house mice, as well as shrews are naturally colonized with S. aureus and whether S. aureus adapts to the wild animal host. 295 animals of ten different species were caught in different locations over four years (2012-2015) in Germany, France and the Czech Republic. 45 animals were positive for S. aureus (15.3%). Three animals were co-colonized with two different isolates, resulting in 48 S. aureus isolates in total. Positive animals were found in Germany and the Czech Republic in each studied year. The S. aureus isolates belonged to ten different spa types, which grouped into six lineages (clonal complex (CC) 49, CC88, CC130, CC1956, sequence type (ST) 890, ST3033). CC49 isolates were most abundant (17/48, 35.4%), followed by CC1956 (14/48, 29.2%) and ST890 (9/48, 18.8%). The wild animal isolates lacked certain properties that are common among human isolates, e.g., a phage-encoded immune evasion cluster, superantigen genes on mobile genetic elements and antibiotic resistance genes, which suggests long-term adaptation to the wild animal host. One CC130 isolate contained the mecC gene, implying wild rodents might be both reservoir and vector for methicillin-resistant . In conclusion, we demonstrated that wild rodents and shrews are naturally colonized with S. aureus, and that those S. aureus isolates show signs of host adaptation.

Phylogenetic analysis of Puumala virus strains from Central Europe highlights the need for a full-genome perspective on hantavirus evolution

Puumala virus (PUUV), carried by bank voles (Myodes glareolus), is the medically most important hantavirus in Central and Western Europe. In this study, a total of 523 bank voles (408 from Germany, 72 from Slovakia, and 43 from Czech Republic) collected between the years 2007–2012 were analyzed for the presence of hantavirus RNA. Partial PUUV genome segment sequences were obtained from 51 voles. Phylogenetic analyses of all three genome segments showed that the newfound strains cluster with other Central and Western European PUUV strains. The new sequences from Šumava (Bohemian Forest), Czech Republic, are most closely related to the strains from the neighboring Bavarian Forest, a known hantavirus disease outbreak region. Interestingly, the Slovak strains clustered with the sequences from Bohemian and Bavarian Forests only in the M but not S segment analyses. This well-supported topological incongruence suggests a segment reassortment event or, as we analyzed only partial sequences, homologous recombination. Our data highlight the necessity of sequencing all three hantavirus genome segments and of a broader bank vole screening not only in recognized endemic foci but also in regions with no reported human hantavirus disease cases.

Comparison of three methods to evaluate wild boar diet

Abstract. Wild boar diet composition highly reflects the management of the species as well as the level of its damaging effect. For this reason we tried to prove similarity and reliability of three methods of wild boar diet analysis to find out their suitability in practical use. Gastrointestinal tracts of 27 wild boar specimens were sampled, with the stomach and faecal contents of each individual being analysed and compared. Stomach and faeces analyses were done by identification of food items under microscope and measuring their quantity volumetrically. The third method, so called “veterinary”, was the simplest one lying in the visual estimation of diet items percentage content diluted and spread in water on a tray. The similarity evaluation by qualitative and quantitative indices and additionally the generalised additive model confirmed that it is possible to identify all major food items which indicate the main diet strategy using all three analysis methods. All three tested methods were relevant in terms of basic features of quantitative and qualitative dietary assessment. The simple “veterinary” method, based on pure estimation, was proved to be suitable for field studies.