Mary Kelly-Quinn

Hybridisation between two cyprinid fishes in a novel habitat: genetics, morphology and life-history traits

BackgroundThe potential role hybridisation in adaptive radiation and the evolution of new lineages has received much recent attention. Hybridisation between roach (Rutilus rutilus L.) and bream (Abramis brama L.) is well documented throughout Europe, however hybrids in Ireland occur at an unprecedented frequency, often exceeding that of both parental species. Utilising an integrated approach, which incorporates geometric morphometrics, life history and molecular genetic analyses we identify the levels and processes of hybridisation present, while also determining the direction of hybridisation, through the analysis of mitochondrial DNA.ResultsThe presence of F2 hybrids was found to be unlikely from the studied populations, although significant levels of backcrossing, involving both parental taxa was observed in some lakes. Hybridisation represents a viable conduit for introgression of genes between roach and bream. The vast majority of hybrids in all populations studied exhibited bream mitochondrial DNA, indicating that bream are maternal in the majority of crosses.ConclusionsThe success of roach × bream hybrids in Ireland is not due to a successful self reproducing lineage. The potential causes of widespread hybridisation between both species, along with the considerations regarding the role of hybridisation in evolution and conservation, are also discussed.

The importance of small waterbodies for biodiversity and ecosystem services: implications for policy makers

Small waterbodies, including ponds and small lakes, low-order streams, ditches and springs, are the most numerous freshwater environments globally, are critical for freshwater biodiversity and are increasingly recognised for their role in ecosystem service delivery. Small waters often represent the best remaining examples of intact freshwater habitats and are the most likely to remain unpolluted, often being a refuge for species which have disappeared from larger, more damaged, waterbodies. Practically all water-related ecosystem services are initially mediated by small waters and some, such as carbon cycling, may be dominated by them. Small waters are exposed to all the threats affecting larger waters, and some experienced only by small waters. Despite this, small waters remain the least investigated part of the water environment and are largely excluded from water management planning. We identify the priorities for research to underpin better protection of small waters and recommend policy actions needed to better integrate small waters into the management of catchments and landscapes. The primary requirements are to identify reliable monitoring programmes for small waters, develop effective measures to protect the biodiversity and ecosystem services they provide and ensure that regulators take full account of this critical part of the water environment.

Evaluating the critical source area concept of phosphorus loss from soils to water-bodies in agricultural catchments

Using data collected from six basins located across two hydrologically contrasting agricultural catchments, this study investigated whether transport metrics alone provide better estimates of storm phosphorus (P) loss from basins than critical source area (CSA) metrics which combine source factors as well. Concentrations and loads of P in quickflow (QF) were measured at basin outlets during four storm events and were compared with dynamic (QF magnitude) and static (extent of highly-connected, poorly-drained soils) transport metrics and a CSA metric (extent of highly-connected, poorly-drained soils with excess plant-available P). Pairwise comparisons between basins with similar CSA risks but contrasting QF magnitudes showed that QF flow-weighted mean TRP (total molybdate-reactive P) concentrations and loads were frequently (at least 11 of 14 comparisons) more than 40% higher in basins with the highest QF magnitudes. Furthermore, static transport metrics reliably discerned relative QF magnitudes between these basins. However, particulate P (PP) concentrations were often (6 of 14 comparisons) higher in basins with the lowest QF magnitudes, most likely due to soil-management activities (e.g. ploughing), in these predominantly arable basins at these times. Pairwise comparisons between basins with contrasting CSA risks and similar QF magnitudes showed that TRP and PP concentrations and loads did not reflect trends in CSA risk or QF magnitude. Static transport metrics did not discern relative QF magnitudes between these basins. In basins with contrasting transport risks, storm TRP concentrations and loads were well differentiated by dynamic or static transport metrics alone, regardless of differences in soil P. In basins with similar transport risks, dynamic transport metrics and P source information additional to soil P may be required to predict relative storm TRP concentrations and loads. Regardless of differences in transport risk, information on land use and management, may be required to predict relative differences in storm PP concentrations between these agricultural basins.

Critical influence of seasonal sampling on the ecological quality assessment of small headwater streams

Variability in the ecological quality assessment of reference sites was tested on small headwater streams in Ireland. Although headwater streams constitute a large portion of the river channel network, they are not routinely monitored for water quality. Various metrics were used including the Irish Q-value and the newly developed Small Streams Risk Score (SSRS), and metrics applied elsewhere in the Atlantic biogeographic region in Europe, including the Biological Monitoring Working Party score (BMWP), the Average Score per Taxon (ASPT), the Ephemeroptera, Plecoptera and Trichoptera taxa (EPT), the Belgium Biotic Index (BBI) and the Danish Stream Fauna Index (DSFI). The AQEM (version 2.5a) assessment software was used to apply some of these metrics. The spring and summer datasets are used to test the performance of biotic metrics with respect to season, and the applicability of their use to assess the ecological quality of wadeable streams. The quality status of most sites assigned by the various metrics was high using the spring invertebrate data, and an apparent considerable deviation in quality status occurred when the summer data was applied. Seasonal differences were noted using all the biotic indices and are attributed to the absence of pollution-sensitive groups in summer. Seasonal variability in the water quality status was particularly evident in acidic streams draining non-calcareous geologies with peaty soils that had relatively lower numbers of taxa. Some indices applied reflect a greater seasonal difference in the quality category assigned. The least amount of variability between seasons was obtained using the ASPT and the SSRS risk assessment system. Results suggest that reference status is reliably reflected in spring when more pollution-sensitive taxa were present, and that a new ecological quality assessment tool is required for application in summer when impacts may be most severe. This highly heterogeneous freshwater habitat seems to have too few taxa present in the summer to reliably determine the ecological quality of the stream using the available indices.

The faunal communities of upland streams in the eastern region of Ireland with reference to afforestation impacts

Macroinvertebrates were sampled from forty-seven sites on upland soft water streams in eastern Ireland. Classification generated four recognisable faunal communities or site groups which differed in biological, physical and chemical character; these patterns were supported by ordination analyses. The environmental gradients which probably influenced water quality were broadly categorised into geology, distance from source or elevation and forestry. Faunal diversity and abundance were reduced in both high altitude and extensively afforested sites compared to moorland sites. Whereas, Plecoptera dominated the fauna at most sites, many taxonomic groups such as the Ephemeroptera and members of the family Elmidae were absent from high altitude and forested areas. The impact of afforestation was most evident at those sites which were located in forest plantations or were on catchments with extensive (>25%) closed canopy (>12 yr) afforestation. Low levels (<25%) of forestry in the absence of acid waters did not lead to impoverishment. This work reveals how plantation forestry in areas receiving only moderately polluted rain can be linked with acid waters and impoverished invertebrate communities.

The potential of integrated constructed wetlands (ICWs) to enhance macroinvertebrate diversity in agricultural landscapes

Integrated Constructed Wetlands (ICWs) constitute an alternative option for the treatment of agricultural wastewater in Ireland. These surface flow systems are formed by interconnected ponds and have the capacity to fit into the landscape and provide habitat for a wide range of biota, including macroinvertebrates that have enormous potential for biodiversity enhancement. For these reasons, five ICW systems were studied. In addition, five natural ponds were investigated to account for the potential of ICW ponds to mimic natural conditions. Nine river sites were also investigated to allow for an evaluation of the catchment biodiversity contribution of the ICW systems. The present study revealed that the last ponds in the chain of these ICW systems are capable of supporting a similar number of taxa as natural ponds. Furthermore, the contribution of the last ponds to the macroinvertebrate diversity at the catchment level was high. ICWs seem to integrate their effluent management and purifying properties with that of biodiversity enhancement and landscape fit. This is the first study to investigate the potential of constructed interconnected ponds, used for wastewater treatment, to enhance biodiversity in agricultural landscapes.

A survey of lakes in the Republic of Ireland: hydrochemical characteristics and acid sensitivity.

Abstract In 1997, as part of a national program to determine and map critical loads, a lake survey was carried out in the Republic of Ireland. In total 200 lakes were sampled, which represents approximately 3.3% of the total lake population. The majority of lakes were situated in remote, high-altitude, acid-sensitive areas along the coastal margins of the country. Lake chemistry was dominated by marine inputs. Approximately 50% of the lakes had DOC > 5 mg L−1 due to the presence of organic soils in a large proportion of the catchments. Nonmarine sulfate concentrations were at background levels (< 20 µeq L−1) in 50% of the lakes. Exceedance of critical load was observed in 7% of the sampled lakes (13 lakes). However, there are uncertainties in the critical load calculations due to the interference of sea salts and organic acids; accurate estimation under such conditions requires long-term lake and deposition chemistry.

A regional examination of episodic acidification response to reduced acidic deposition and the influence of plantation forests in Irish headwater streams

Episodic surface water acidification is common in many regions worldwide; the driving processes are dependent on a variety of physicochemical and climatic characteristics, and acid deposition pressures, which have changed significantly over the last two decades. This study provided a unique opportunity to re-examine the drivers of acidity in an environment of low anthropogenic input. In three geologically distinct acid-sensitive regions of Ireland during 2009-2010, 34 headwater streams were evaluated in peat-dominated catchments draining moorlands without forest, 20-50% (low) forest cover and >50% (high) forest cover. Results indicated episodic acidity/alkalinity loss in headwater streams, despite significant reductions in acid deposition. Both the differences in pH between base and storm-flow (∆pH) and the number of pH events≤5.5 were higher in forested streams. Dissolved organic carbon and inorganic aluminium concentrations were also higher in forested catchments. The primary driver of acidity was strong organic anions, which generally increased with increasing forest cover. Base-cation dilution was also prominent in west and southern regions, while surprisingly chlorine anion acidity from sea-salts had little or no influence on stream acidity. The contributions of excess non-marine sulphate (xSO(4)) and nitrate (NO(3)) to storm-water were low, with no observed increases in xSO(4) with increasing forest cover, although contributions of NO(3) were higher in forested catchments in the east. The results suggest that episodic acidification in Ireland is primarily driven by organic acids. However in peat dominant catchments, plantation forest, climate change and/or reductions in xSO(4) appear to also be having an effect on stream pH from increased DOC, with some forested streams previously unaffected by deposition now showing low pH (<5.5) during storm-flow. As quantified from this study, observed changes in stream acidification in Ireland may provide a better understanding of future chemical responses to declining acid deposition and climate change elsewhere.

Optimising sample volume and replicates using the Bou-Rouch method for the rapid assessment of hyporheic fauna

Despite the widespread use of the Bou-Rouch method in obtaining hyporheic samples in ecological studies, problems persist in comparing data because of differences in volume and number of samples taken in various studies. Towards standardising this method, we conducted a study in the Delour River, Ireland, between March and September 2006. The hyporheic habitat was divided into three lateral zones: the flowing stream (SS); the stream–terrestrial ecotone (EC); and the terrestrial margin (TM). Between 3 and 6 random insertions of the stand pipe were made into the hyporheic habitat at 0.2 m and 0.5 m in each zone. Ten consecutive 1-L samples were pumped at each point to determine an optimum sample volume and replicates needed to estimate taxon richness and abundance. The optimum sample combinations range between 6 and 15 3- to 10-L samples depending on depth and habitat zone. Our results show that both spatial and temporal scales are important factors in considering the optimum combinations of sample volume and number of independent spatial replicates needed to sample stream hyporheos, with the zone closer to the flowing stream requiring many small-volume samples whereas areas further away towards the alluvial groundwater need larger volumes with small numbers of replicates.

Trophic flexibility by roach Rutilus rutilus in novel habitats facilitates rapid growth and invasion success

Stable isotope and gut content analyses, in conjunction with backcalculated length-at-age estimates of growth, were employed to examine the relationship between trophic ecology and growth rate of a successful invader, Rutilus rutilus, in eight lakes in Ireland. The data revealed that R. rutilus was a trophic generalist in Irish lakes. It utilized a greater proportion of pelagic resources in mesotrophic lakes than in eutrophic lakes, potentially due to a greater density of benthic macroinvertebrates in eutrophic systems. The species was characterized by a large dietary and isotopic niche width and high temporal and spatial variations in diet. Growth rates were typical of those found in the native range of the species and were unrelated to either lake productivity or fishs diet. A generalist trophic ecology confers significant advantages on an invasive species, allowing it to exploit a variety of novel resources and fluctuations in prey availability.