Matthew D. Sweeney
University of California, Berkeley
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Featured researches published by Matthew D. Sweeney.
Journal of Biological Chemistry | 2006
Susan E. Crown; Yonghao Yu; Matthew D. Sweeney; Julie A. Leary; Tracy M. Handel
Despite the wide range of sequence diversity among chemokines, their tertiary structures are remarkably similar. Furthermore, many chemokines form dimers or higher order oligomers, but all characterized oligomeric structures are based primarily on two dimerization motifs represented by CC-chemokine or CXC-chemokine dimer interfaces. These observations raise the possibility that some chemokines could form unique hetero-oligomers using the same oligomerization motifs. Such interactions could modulate the overall signaling response of the receptors, thereby providing a general mechanism for regulating chemokine function. For some chemokines, homo-oligomerization has also been shown to be coupled to glycosaminoglycan (GAG)-binding. However, the effect of GAG binding on chemokine hetero-oligomerization has not yet been demonstrated. In this report, we characterized the heterodimerization of the CCR2 ligands MCP-1 (CCL2), MCP-2 (CCL8), MCP-3 (CCL7), MCP-4 (CCL13), and eotaxin (CCL11), as well as the effects of GAG binding, using electrospray ionization Fourier transform ion cyclotron resonance (ESI-FTICR) mass spectrometry. Strong heterodimerization was observed between CCL2 and CCL8 at the expense of homodimer formation. Using NMR, we showed that the heterodimer is predominant in solution and forms a specific CC chemokine-like dimer. By contrast, only moderate heterodimer formation was observed between CCL2·CCL13, CCL2·CCL11 and CCL8·CCL13, and no heterodimerization was observed when any other CCR2 ligand was added to CCL7. To investigate the effect of a highly sulfated GAG on the formation of heterodimers, each chemokine pair was mixed with the heparin pentasaccharide, Arixtra, and assayed by ESI-FTICR mass spectrometry. Although no CCL8·CCL11 heterodimer was observed in the absence of GAG, abundant ions corresponding to the ternary complex, CCL8·CCL11·Arixtra, were observed upon addition of Arixtra. Heterodimerization between CCL2 and CCL11 was also enhanced in the presence of Arixtra. In summary, these results indicate that some CCR2 ligands can form stable heterodimers in preference to homodimers and that these interactions, like those of homo-oligomers, can be influenced by some GAGs.
Journal of Biological Chemistry | 2007
Matthew R. Schenauer; Yonghao Yu; Matthew D. Sweeney; Julie A. Leary
Chemokines participate in well documented interactions with glycosaminoglycans (GAGs). Although many chemokine amino acid residues involved in binding have been identified, much less is known about the bound regions of GAG. Heparan sulfate (HS) is the predominant cell surface GAG, and its heterogeneous nature offers proteins a variety of structural motifs with which to interact. In the present study, we describe the interactions of three CC chemokines, MCP-1/CCL2, MCP-2/CCL8, and MCP-3/CCL7, with HS-derived oligosaccharides. To this end, we generated and characterized a complex HS octasaccharide library containing 17 different octasaccharide compositions based on acetyl and sulfate group content. Electrospray ionization mass spectrometry was used to detect chemokine-HS octasaccharide complexes in the bound state, and an affinity purification protocol was used to select and identify chemokine-binding octasaccharides from the complex mixture. The results indicate that HS octasaccharide sulfation is the foremost requirement for chemokine binding. However, within octasaccharides of constant charge density, acetylation is also observed to augment binding, suggesting that there may be as yet undiscovered specificity in the chemokine-HS interaction.
Journal of the American Society for Mass Spectrometry | 2006
Yonghao Yu; Matthew D. Sweeney; Ola M. Saad; Julie A. Leary
Chemokines play a critical role in inducing chemotaxis, extravasation, and activation of leukocytes both in routine immunosurveillance and autoimmune diseases. Traditionally, to disrupt chemokine function, strategies have focused on blockage of its interaction with the receptor. Recently, it has been demonstrated that binding to glycosaminoglycans (GAGs) is also required for the in vivo activity of many chemokines. Thus, interference with the GAG-binding of chemokines may offer an alternative, valid, anti-inflammatory strategy. However, the potential of using small polyanions to inhibit the interactions between chemokines and cell surface GAGs has not been fully explored. In this study, a mass spectrometry based filtration trapping assay was utilized to study the interactions between two CCR 2 ligands (MCP-1/CCL2 and MCP-3/CCL7) and a series of low molecular weight, polyanionic molecules. Findings were confirmed by using a hydrophobic trapping assay. The results indicated that Arixtra (fondaparinux sodium), sucrose octasulfate, and suramin were specific binders of the chemokines, while cyclodextrin sulfate, although the most highly sulfated molecule among the ones investigated, showed no binding. The binding stoichiometry of the small molecule ligand was determined from the measured molecular weight of the noncovalent complex. Furthermore, the dissociation constant between MCP-3 and Arixtra was determined by using electrospray ionization Fourier transform ion cyclotron resonance (ESI FT-ICR) mass spectrometry, which compared favorably with the result of the isothermal titration calorimetry (ITC) assay. The relative binding affinity of these ligands to MCP-3 was also determined using a competitive filtration trapping assay.
Annual Review of Biochemistry | 2005
Tracy M. Handel; Zoë Johnson; Susan E. Crown; Elaine K. Lau; Matthew D. Sweeney; Amanda E. I. Proudfoot
Journal of Biological Chemistry | 2005
Yonghao Yu; Matthew D. Sweeney; Ola M. Saad; Susan E. Crown; Tracy M. Handel; Julie A. Leary
Annual Review of Biochemistry | 2005
Tracy M. Handel; Zelpha B. Johnson; Susan E. Crown; Elizabeth T. Lau; Matthew D. Sweeney; Amanda E. I. Proudfoot
The FASEB Journal | 2006
Julie A. Leary; Yonghao Yu; Ola M. Saad; Matthew D. Sweeney
The FASEB Journal | 2006
Yonghao Yu; Susan E. Crown; Matthew D. Sweeney; Tracy M. Handel; Julie A. Leary
Journal of the American Society for Mass Spectrometry | 2006
Yonghao Yu; Matthew D. Sweeney; Ola M. Saad; Susan E. Crown; Tracy M. Handel; Julie A. Leary
Journal of Biological Chemistry | 2005
Yonghao Yu; Matthew D. Sweeney; Ola M. Saad; Susan E. Crown; Andro R. Hsu; Tracy M. Handel; Julie A. Leary