Matthew S. Platz

Riboflavin and UV-Light Based Pathogen Reduction: Extent and Consequence of DNA Damage at the Molecular Level

Abstract We are developing a technology based on the combined application of riboflavin (RB) and light for inactivating pathogens in blood products while retaining the biological functions of the treated cells and proteins. Virus and bacteria reduction measured by tissue culture infectivity or colony formation with UV light alone and in combination with RB yield equivalent results. The effects of RB as a sensitizing agent on DNA in white cells, bacteria and viruses in combination with UV light exposure have been evaluated. UV-mediated DNA degradation in Jurkat T cells and leukocytes in plasma as measured by the FlowTACS assay was significantly increased in the presence of RB. Agarose gel electrophoretic analysis of DNA in Escherichia coli and leukocytes in plasma demonstrated enhanced DNA degradation in the presence of RB. UV light in combination with RB prevented the reactivation of lambda phage compared with samples irradiated in the absence of RB. UV-mediated oxidative damage in calf thymus DNA was also enhanced in the presence of RB. These observations clearly demonstrate that the presence of RB and UV light selectively enhances damage to the guanine bases in DNA. These data also suggest that the type and extent of damage to DNA for virus in the presence of RB and light make it less likely to be repaired by normal repair pathways available in host cells.

Ultrafast UV−Vis and IR Studies of p-Biphenylyl Acetyl and Carbomethoxy Carbenes

The photochemistry of a p-biphenylyl diazo ester (BpCN2CO2CH3) and diazo ketone (BpCN2COCH3) were studied by ultrafast time-resolved UV-vis and IR spectroscopies. The excited states of these diazo compounds were detected and found to decay with lifetimes of less than 300 fs. The diazo ester produces singlet carbene with greater quantum efficiency than the ketone analogue due to competing Wolff rearrangement (WR) in the excited state of the diazo ketone. Carbene BpCCO2CH3 has a singlet-triplet gap that is close to zero in cyclohexane, but the triplet is the ground state. The two spin states are in rapid equilibrium in this solvent relative to reaction with cyclohexane. There is (for a carbene) a slow rate of singlet to triplet intersystem crossing (isc) in this solvent because the orthogonal singlet must rotate to a higher energy orientation prior to isc. In acetonitrile and in dichloromethane BpCCO2CH3 has a singlet ground state. Ketocarbene BpCCOCH3 has a singlet ground state in cyclohexane, in dichloromethane, and in acetonitrile and decays by WR to form a ketene detected by ultrafast IR spectroscopy in these solvents. Ketocarbenes have more stable singlet states, relative to carbene esters, because of the superior conjugation of the filled hybrid orbital of the carbene with the pi system of the carbonyl group, the same factor that makes methyl ketones more acidic than the analogous esters. The rate of WR of BpCCOCH3 is faster in cyclohexane than in dichloromethane and acetonitrile because of intimate solute-solvent interactions between the empty p orbital of the carbene and nonbonding electron pairs of heteroatoms of the solvent. These interactions stabilize the carbene and retard the rate of WR.

INACTIVATION OF LAMBDA PHAGE WITH 658 nm LIGHT USING A DNA BINDING PORPHYRIN SENSITIZER

Exposure of lambda phage to 658 nm light in the presence of 5,10,15,20‐tetrakis‐(1‐methyl‐4‐pyridyl)‐21H,23H‐prphine, tetra‐p‐tosylate leads to complete (< 7 logs) inactivation as measured by the plaque assay. The sensitizer without light and 658 nm photolysis of lambda phage in the absence of sensitizer do not lead to a measurable decrease in viral inactivity. Viral inactivation is not dependent upon the presence of oxygen.

Photochemistry of 2-Naphthoyl Azide. An Ultrafast Time-Resolved UV―Vis and IR Spectroscopic and Computational Study

The photochemistry of 2-naphthoyl azide was studied in various solvents by femtosecond time-resolved transient absorption spectroscopy with IR and UV-vis detection. The experimental findings were interpreted with the aid of computational studies. Using polar and nonpolar solvents, the formation and decay of the first singlet excited state (S(1)) was observed by both time-resolved techniques. Three processes are involved in the decay of the S(1) excited state of 2-naphthoyl azide: intersystem crossing, singlet nitrene formation, and isocyanate formation. The lifetime of the S(1) state decreases significantly as the solvent polarity increases. In all solvents studied, isocyanate formation correlates with the decay of the azide S(1) state. Nitrene formation correlates with the decay of the relaxed S(1) state only upon 350 nm excitation (S(0) → S(1) excitation). When S(n) (n ≥ 2) states are populated upon excitation (λ(ex) = 270 nm), most nitrene formation takes place within a few picoseconds through the hot S(1) and higher singlet excited states (S(n)) of 2-naphthoyl azide. The data correlate with the results of electron density difference calculations that predict nitrene formation from the higher-energy singlet excited states, in addition to the S(1) state. For all of these experiments, no recovery of the ground state was observed up to 3 ns after photolysis, which indicates that both internal conversion and fluorescence have very low efficiencies.

The dynamics of carbene solvation: an ultrafast study of p-biphenylyltrifluoromethylcarbene.

Ultrafast photolysis (lambda(ex) = 308 nm) of p-biphenylyltrifluoromethyl diazomethane (BpCN2CF3) releases singlet p-biphenylyltrifluoromethylcarbene (BpCCF3) which absorbs strongly at 385 nm in cyclohexane, immediately after the 300 fs laser pulse. The initial absorption maximum shifts to longer wavelengths in coordinating solvents (nitrile, ether, and alcohol). In low viscosity coordinating solvents, the initial absorption maximum further red shifts between 2 and 10 ps after the laser pulse. Similar effects are observed upon ultrafast photolysis of 2-fluorenyltrifluoromethyl diazomethane (FlCN2CF3) and therefore cannot be associated with torsional motion around the two phenyl rings of the biphenyl compound. Instead, the effect is attributed to the dynamics of solvation of the singlet carbene. The time constant of solvation in normal alcohols lengthens with solvent viscosity in a linear manner. Furthermore, the time constants of the red shift in methanol-O-d (16 ps), ethanol-O-d (26 ps), 2-propanol-OD (40 ps), and 2,2,2-trifluoroethanol-O-d (14 ps) are longer than those recorded in methanol (9.6 ps, KIE = 1.7), ethanol (14.3 ps, KIE = 1.8), 2-propanol (28 ps, KIE = 1.4), and 2,2,2-trifluoroethanol (4.4 ps, KIE = 3.2), which indicates that the solvent reorganization involves formation of hydrogen bonds. The kinetic data are consistent with motion of the solvent to achieve a specific interaction with the carbene, with the creation of a new hydrogen bond. The solvated carbene reacts with the solvent over tens, hundreds, and thousands of ps, depending upon the solvent.

Polyfluorinated aryl azides as photoaffinity labelling reagents; the room temperature CH insertion reactions of singlet pentafluorophenyl nitrene with alkanes

Abstract Photolysis of pentafluorophenyl azide in alkanes releases singlet pentafluorophenylnitrene which inserts into the CH bond of cyclopentane to produce an adduct in 28% yield.

Kinetics and spectroscopy of substituted phenylnitrenes

Publisher Summary This chapter discusses the progress made in the areas of the direct observation of singlet aryl nitrenes, direct study of the kinetics of singlet nitrene reactions, and high-level quantum chemical calculations of nitrene potential energy surface. Singlet phenylnitrene is detected directly, and its spectrum is analyzed with the aid of modern computational methods. The rate constant of intersystem crossing to the lower-energy triplet state is also measured and is much smaller than the corresponding values observed with aryl carbenes. This is largely the consequence of the open-shell electronic structure of phenylnitrene. The activation parameters to the cyclization of singlet phenylnitrene to benzazirine are in good agreement with modern quantum chemical calculations. The chapter examines the effect of substituents on the spectra and kinetics of singlet aryl nitrenes systematically. Groups that act as strong π donors dramatically accelerate intersystem crossing (ISC). Electron-withdrawing groups also slightly accelerate ISC. Para substituents, such as cyano and phenyl, reduce spin density ortho to the nitrene-bearing carbon and reduce the rate of cyclization to the corresponding benzazirine.

Exploratory photochemistry of iodinated aromatic azides

In contrast to the photolysis of p-toluyl azide, photolysis of ortho- or meta-iodo substituted p-toluyl azide in the presence of nucleophilic trapping agents produced the corresponding triplet nitrene which led to the simple aniline products and not to the dehydroazepine-nucleophile adducts.

Study of concerted and sequential photochemical Wolff Rearrangement by femtosecond UV-vis and IR spectroscopy.

Photoinduced Wolff rearrangements were studied by femtosecond time-resolved UV-vis and IR transient absorption spectroscopy. For BpCN2COCH3 in acetonitrile the IR data indicate the presence of at least two mechanisms of ketene formation. The first process is fast proceeding in either 1BpCN2COCH3*, or in a hot carbene, or in both species, while the second is slow proceeding through the intermediacy of a relaxed carbene. The slow time constant of the ketene formation dynamics obtained by ultrafast IR (700 ps) spectroscopy agrees with the relaxed carbene decay of 800 +/- 100 ps obtained by UV-vis absorption spectroscopy.

Direct observation of a sulfonyl azide excited state and its decay processes by ultrafast time-resolved IR spectroscopy.

The photochemistry of 2-naphthylsulfonyl azide (2-NpSO(2)N(3)) was studied by femtosecond time-resolved infrared (TR-IR) spectroscopy and with quantum chemical calculations. Photolysis of 2-NpSO(2)N(3) with 330 nm light promotes 2-NpSO(2)N(3) to its S(1) state. The S(1) excited state has a prominent azide vibrational band. This is the first direct observation of the S(1) state of a sulfonyl azide, and this vibrational feature allows a mechanistic study of its decay processes. The S(1) state decays to produce the singlet nitrene. Evidence for the formation of the pseudo-Curtius rearrangement product (2-NpNSO(2)) was inconclusive. The singlet sulfonylnitrene (1)(2-NpSO(2)N) is a short-lived species (τ ≈ 700 ± 300 ps in CCl(4)) that decays to the lower-energy and longer-lived triplet nitrene (3)(2-NpSO(2)N). Internal conversion of the S(1) excited state to the ground state S(0) is an efficient deactivation process. Intersystem crossing of the S(1) excited state to the azide triplet state contributes only modestly to deactivation of the S(1) state of 2-NpSO(2)N(3).