Mauricio Parra-Quijano

Ecogeographical land characterization maps as a tool for assessing plant adaptation and their implications in agrobiodiversity studies

Information on plant adaptation can be very useful in agrobiodiversity studies. Ecogeographical land characterization (ELC) maps constitute a new tool in this direction with great potential. To assess the usefulness of this approach, an ELC map of Spain was created through multivariate methods. Its performance to characterize plant habitat preferences was compared with existing ecological regions and land cover maps. Collecting sites and seed weight from eight plant species were used to test the ELC map. Categories from each map were assigned to accessions using collecting sites. Chi-square tests were applied to test if category frequency distributions for each species followed a distribution proportional to the relative frequency of categories in each map. The tests found significant differences in the eight species studied. Thus, Bonferroni confidence intervals (BCI) classified categories from maps in preferred, neutral or avoided habitats. Seed weight was used as a proxy for plant adaptation. Comparison between observed and expected ranking of BCI and quartile classes in terms of seed weight means, and GLM and post-hoc tests carried out to test the effect of these classes upon seed weight showed consistently better results for the ELC map. Species results and applications of ecogeographic maps in plant genetic resources conservation are discussed.

Improving representativeness of genebank collections through species distribution models, gap analysis and ecogeographical maps

An efficient germplasm collecting method was evaluated using six Lupinus species and the Spanish Lupinus collection as a study case. This method includes the application of geographic information systems, ecogeographical land characterization maps, species distribution models and gap analysis to identify prioritized collecting sites. To evaluate the efficiency of this collecting method, field collecting expeditions were carried out focusing on prioritized sites and the results of these collections were analyzed. Prioritized sites were identified using spatial and ecogeographical gaps, and potential species richness maps. The spatial gaps corresponded to populations non-included in the collection but recorded by other information sources while ecogeographical gaps corresponded to spatial gaps that were located in ecogeographical categories (obtained from the ecogeographical map) that were scarcely represented in the collection. A potential Lupinus species richness map was obtained by adding the information of single maps of Lupinus species distribution models. Subsequently, prioritized sites were obtained in ecogeographical gaps with high potential species richness values. Collecting expeditions were made in Spain in 2006, 2007 and 2008. Results showed that using the efficient germplasm collecting methodology was highly positive not only from a quantitative viewpoint (between 7.8 and 11% increase) but also in qualitative terms, focusing collection efforts in ecogeographical categories with low or null representation in the Spanish Lupinus collection (41% of the new accessions). Phenotypic differences related to adaptation to environment were observed in the field between the populations that grow in low or null represented categories and those that grow in highly represented categories.

An exploration of wild Brassica oleracea L. germplasm in Northern Spain

An intense exploration of the Spanish Cantabrian coast for the presence or absence of wild Brassica oleracea L., yielded 24 new localities to be added to the 21 previously known. Of the resulting 45 localities, 22 correspond to Asturias, 11 to Cantabria and 12 to the Basque Country. Data on the habitat requirements of this plant have been annotated, the conservation status of each population has been estimated and seed samples have been collected for long-term preservation. As a whole, wild B. oleracea is not threatened in Northern Spain, but some populations and/or sub-populations are at risk either because of their small size or some detectable human impact.

National inventory and prioritization of crop wild relatives in Spain

Crop wild relatives (CWR) have recently received significant attention due to their value as plant genetic resources and their contribution to world food security. We present a prioritized checklist of CWR in Spain in which the criteria of crossability with crops of economic importance, endemicity and threat status have been taken into account. First, we selected a list of genera corresponding to the most relevant crops for Spain and at the international level. These crops were classified into use categories (Food, Forage & Fodder, Ornamental, and Industrial & Other uses) depending on their main use. The wild plant species native to Spain belonging to these genera were then listed. After evaluation by national experts in plant breeding, the resulting checklist contained 929 species. Further selection based on crossability, endemicity and threat status led to the generation of the Prioritized Spanish Checklist of crop wild relatives containing 578 species. Thirty-two percent of these species belong to the Forage & Fodder use category, 28% to the Ornamental category, 24% to the Food category and 16% to the Industrial & Other uses category. Thirty-five percent of the prioritized species are endemic to Spain, and over one-fourth are classified under some category of threat according to the International Union for Conservation of Nature. Endemicity and threat status rates in the Prioritized Spanish Checklist of CWR were higher than those found in the prioritized CWR inventories of other countries. A ex situ assessment reporting number of accessions showed that 70% of the prioritized Spanish CWR have accessions preserved in genebanks.

Diversity of Ullucus tuberosus (Basellaceae) in the Colombian Andes and notes on ulluco domestication based on morphological and molecular data

Ullucus tuberosus (common name ‘ulluco’) is a popular tuber crop of Andean highlands. Until now attention has been focused on ulluco from Bolivia, Peru and Ecuador, but little is known about its diversity in Colombia. Thirty-six accessions of cultivated ulluco preserved in the Gene Bank of the Universidad Nacional de Colombia were studied to assess the genetic diversity and spatial genetic structure of Colombian ulluco. We used morphological characters, molecular markers (total proteins, isozymes and RAPDs) and ploidy level. High morphological variability, especially for tuber shape and colour characters, was found. Eight accessions from north-east Colombian Andes showed some typical character-states of wild ulluco, suggesting that they could be partially domesticated forms. Genetic analysis using RAPD markers indicated that these accessions were very similar to other cultivated ullucos belonging to the same region. The regional structure observed in isozyme and RAPD dendrograms was confirmed by AMOVA results (52.6% among-region variation) and the spatial correlogram, showing the presence of two gene pools of ulluco in Colombia. Our results and the accumulated data suggest that ulluco was introduced to Colombia at least two times. Initially, semi-domesticated forms would have come from the central Andes to north-east Colombian Andes, where the native inhabitants would have completed the domestication process. Again, fully domesticated ullucos might have been introduced to south-west Colombian Andes.

Identification of ecogeographical gaps in the Spanish Aegilops collections with potential tolerance to drought and salinity

Drought, one of the most important abiotic stress factors limiting biomass, significantly reduces crop productivity. Salinization also affects the productivity of both irrigated and rain-fed wheat crops. Species of genus Aegilops can be considered crop wild relatives (CWR) of wheat and have been widely used as gene sources in wheat breeding, especially in providing resistance to pests and diseases. Five species (Ae. biuncialis, Ae. geniculata, Ae. neglecta, Ae. triuncialis and Ae. ventricosa) are included in the Spanish National Inventory of CWRs. This study aimed to identify ecogeographic gaps in the Spanish Network on Plant Genetic Resources for Food and Agriculture (PGRFA) with potential tolerance to drought and salinity. Data on the Spanish populations of the target species collected and conserved in genebanks of the Spanish Network on PGRFA and data on other population occurrences in Spain were compiled and assessed for their geo-referencing quality. The records with the best geo-referencing quality values were used to identify the ecogeographical variables that might be important for Aegilops distribution in Spain. These variables were then used to produce ecogeographic land characterization maps for each species, allowing us to identify populations from low and non-represented ecogeographical categories in ex situ collections. Predictive characterization strategy was used to identify 45 Aegilops populations in these ecogeographical gaps with potential tolerance to drought and salinity conditions. Further efforts are being made to collect and evaluate these populations.