Md. Rashidul Islam

Compost tea as soil drench: an alternative approach to control bacterial wilt in brinjal

An experiment was conducted in the field laboratory, Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh, to evaluate the efficacy of compost tea and poultry litter extract along with their economic feasibility of their usage in controlling bacterial wilt of brinjal under natural incidence condition. A significant variation was observed among the treatments on the incidence and severity of bacterial wilt in brinjal. The results showed that the lowest wilt incidence was recorded in T2 (Compost tea as soil drenching), T5 (Poultry litter as soil application) and T6 (IPM Lab Biopesticide as soil application) while the highest wilt incidence was recorded in control treatment in both counting periods. Similar trend regarding the performance of these treatments was observed on the bacterial wilt severity of brinjal. The effects of compost tea and poultry litter extract on the growth and yield parameters of eggplant were observed to be significant. The results revealed that plant height, number of branches per plant, number of fruits per plant and fruit yield per ha were recorded as maximum in T2 (Compost tea as soil drenching), followed by T5 (Poultry litter as soil application) and T6 (IPM Lab Biopesticide as soil application), while the minimum plant height, number of branches per plant, number of fruits per plant and fruit yield were recorded in control treatment (T1). The other treatments showed significant effect in increasing all the growth and yield parameters of brinjal as compared to control. Benefit cost analyses (BCR) showed that T6 (IPM Lab Biopesticide as soil application) resulted in the highest BCR (99.21) as compared to control, followed by T7 (BAU-Biofungicide as foliar spray) and T2 (Compost tea as soil drenching) with BCR 35.7 and 19.5, respectively. The results indicated that an investment of Tk. 1.00 may lead to a profit up to Tk. 99.21 by soil application of IPM Lab Biopesticide which gave the maximum profit in the present study. T7 (BAU-Biofungicide as foliar spray) followed T2 (Compost tea as soil drenching) where the investment Tk. 1.00 returned a profit of Tk. 35.70 and Tk. 19.5, respectively. Soil drenching of compost tea showed comparatively lower BCR but the highest percent increase of gross margin was obtained when compost tea was applied as soil drench (T2). Therefore, it may be concluded that soil drenching of compost tea may be an alternative approach to control bacterial wilt of brinjal along with other possible organic amendments.

Analyses of genetic diversity of bacterial blight pathogen, Xanthomonas oryzae pv. oryzae using IS1112 in Bangladesh

Bacterial blight (BB) is caused by Xanthomonas oryzae pv. oryzae (Xoo), a most destructive disease of rice, mostly in Asia, including Bangladesh. Altogether 96 isolates of Xoo were collected from 19 rice-growing districts of Bangladesh in both the rain-fed and irrigated seasons of 2014 to assess their pathotypic and genetic variation. Pathotypic analyses were carried out on a set of 12 Near Isogenic Lines (NILs) of rice containing a single resistance gene and two check varieties IR24 and TN1 by the leaf clipping inoculation method. A total of 24 pathotypes were identified based on their virulence patterns on the NILs tested. Among these, pathotypes VII, XII and XIV, considered as major, containing a maximum number of isolates (9.38% each), are frequently distributed in seven northern to mid-eastern districts of Bangladesh. The most virulent pathotype I was recorded in the Habiganj and Brahmanbaria districts. The molecular analysis of variability among the isolates was carried out through PCR analysis using multi-locus primers Jel1 and Jel2 (based on the repetitive element IS1112 in the Xoo genome). Using the genotypic data, a dendrogram was constructed with 17 clusters along with 17 molecular haplotypes at the 65% similarity index. Cluster I was composed of 46 isolates considered as major, whereas clusters X, XI, XII and XVII were represented by a single isolate. A phenogram was constructed based on virulence to interpret the relationship between the pathotypes and the molecular haplotypes. At the 50% similarity level, among 10 clusters, cluster I, considered as major, consisted of a maximum of 10 pathotypes out of 24. In case of haplotypes, a maximum of 7 haplotypes were obtained from pathotype XII, whereas pathotypes IX, X, XV, XXII and XXIV were represented by a single haplotype. However, the present study revealed that different isolates belonging to the same pathotypes belonged to different haplotypes. Conversely, genetically similar haplotypes were also detected from different pathotypes collected from separate districts. This relationship appeared due to a high degree of DNA polymorphism among strains within many pathotypes existing in Bangladesh.

Pathotypic variation of Xanthomonas oryzae pv. oryzae in Bangladesh

Bacterial Blight (BB) caused by Xanthomonas oryzae pv. oryzae (Xoo), a destructive disease of rice. Altogether, 96 isolates of Xoo were collected from 19 rice growing districts of Bangladesh in irrigated and rainfed seasons during 2014 to assess pathotypic variation. Pathotypic analyses on a set of 12 Near Isogenic Lines (NILs) of rice containing resistance genes viz. Xa1, Xa2, Xa3, Xa4, Xa5, Xa7, Xa8, Xa10, Xa11, Xa13, Xa14 and Xa21 and two check varieties IR24 and TN1 by leaf clip-inoculation technique. A total of 24 pathotypes were identified based on their virulence patterns on NILs tested. Among these, pathotypes VII, XII, and XIV considered as major, containing maximum number of isolates, (9.38% each) frequently distributed in North to Mid-Eastern districts of Bangladesh. Most virulent pathotype I recorded from Habiganj and Brahmanbaria. This pathotypic variation explained the pathogenic relatedness of X. oryzae pv. oryzae populations from diverse geographic areas in Bangladesh.

Genetic diversity of the bacterial wilt pathogen Ralstonia solanacearum using a RAPD marker

Bacterial wilt caused by Ralstonia solanacearum is a destructive disease of many economically important crop species. A significant variation in wilt incidence and severity in eggplant and potato was observed among the growing areas surveyed. R. solanacearum isolates obtained both from eggplant and potato belong to biovar III, while isolates from eggplant belong to race 1 and isolates obtained from potato belong to race 3. Random amplified polymorphic DNA (RAPD) technique was used as a tool for assessing genetic variation and relationship among seven isolate groups of R. solanacearum viz., RsB-1, RsB-2, RsB-3, RsP-1, RsP-2, RsP-3 and RsP-4, consisting in a total of 28 isolates. Out of the RAPD markers used, amplification with four decamer primers produced 70 bands with sizes ranging from 100 to 1400 bp. Out of 70 bands, 68 bands (97.06%) were polymorphic and two bands (2.94%) were monomorphic amongst the seven R. solanacearum isolates group. The Unweighted Pair Group Method of Arithmetic Means (UPGMA) dendrogram constructed from Neis genetic distance produced two main clusters of the seven isolates of R. solanacearum. The isolates RsB-1, RsB-2, RsB-3 and R-4 grouped in cluster І, while RsP-2, RsP-3 and RsP-4 grouped in cluster ІІ. The highest intra-variety similarity index (Si) was found in RsB-1 isolate (86.35%) and the lowest one in RsP-2 (56.59%). The results indicated that relatively higher and lower levels of genetic variation were found in RsP-3 and RsB-3, respectively. The coefficient of gene differentiation (G(st)) was 0.5487, reflecting the existence of a high level of genetic variations among seven isolates of R. solanacearum. Comparatively higher genetic distance (0.4293) and lower genetic identity (0.6510) were observed between RsB-2 and RsP-4 combinations. The lowest genetic distance (0.0357) and highest genetic identity (0.9650) were found in RsB-1 vs. RsB-2 pair. Thus, RAPD offers a potentially simple, rapid and reliable method to evaluate genetic diversity analysis in R. solanacearum.

Survival and transmission of Xanthomonas oryzae pv. oryzae in rice seeds

Xanthomonas oryzae pv. oryzae is a major pathogen of rice that causes bacterial leaf blight (BLB) disease and is a great threat to rice production worldwide. Transmission of X. oryzae pv. oryzae from seed to seed is remain in enigma. In this study, seed transmission was investigated to detect and identified X. oryzae pv. oryzae in rice seeds of BR11 collected from the naturally BLB infected field and the transmission of X. oryzae pv. oryzae from seed to plant to seed during November, 2014 to November, 2015 at Seed Pathology Centre, Bangladesh Agricultural University, Mymensingh. The results indicated the survival ability of X. oryzae pv. oryzae for one season to another for at least 10 months but the survivability of the bacterium decreased with the increasing of storage time. The transmission of X. oryzae pv. oryzae was carried out through transplanting of the seedlings raised from the infected seeds. X. oryzae pv. oryzae was then detected in the seeds harvested from the infected plants raised from the seedlings produced from the previously harvested BLB infected seeds. These results clearly indicated the transmission of X. oryzae pv. oryzae from seed to plant to seed carryover at least from one season to another.