Meijie Wang

Investigation on the toxic interaction of toluidine blue with calf thymus DNA

The gene toxic interactions of toluidine blue (TB) with calf thymus DNA (ct-DNA) were examined in vitro with UV-visible absorption spectroscopy, fluorescence spectroscopy, fluorescence polarization and circular dichroism techniques. The experimental results showed that TB interacted with ct-DNA by two binding modes. At low TB concentrations, TB intercalated into the DNA base pairs. At higher TB concentrations, TB was attached to the negatively charged phosphate groups. For the intercalation binding mode and electrostatic binding mode, the binding constants were 1.76 x1 0(6)L mol(-1) and 6.18 x 10(5)L mol(-1) and the number of binding sites was 0.48 and 0.79, respectively. Circular dichroism results showed that the two binding modes had different effects on the ct-DNA conformation. At high dye concentrations, Z-form DNA appears, while at low TB concentrations, a B to A form transition is observed.

Spectroscopic investigation on the toxic interactions of Ni2+ with bovine hemoglobin.

The toxic interaction between Ni(2+) and bovine hemoglobin (BHb) was investigated using fluorescence spectroscopy, synchronous fluorescence spectroscopy, ultraviolet-visible (UV-vis) absorption spectroscopy and circular dichroism spectroscopy (CD) under simulated physiological conditions. The experimental results showed that both dynamic and static quenching occurred simultaneously when Ni(2+) quenched the fluorescence of BHb. The binding site number n, apparent binding constant K(a) and corresponding thermodynamic parameters were measured at different temperatures. There was formation of Ni-BHb complex, but the binding between Ni(2+) and BHb was not strong. The process of the formation of Ni-BHb complex was a spontaneous interaction procedure in which electrostatic interaction played a major role. In addition, UV-vis and CD results showed that the addition of Ni(2+) changed the conformation of BHb.

Spectroscopic investigation on the toxicological interactions of 4-aminoantipyrine with bovine hemoglobin.

The effects of 4-aminoantipyrine (AAP) on bovine hemoglobin (BHb) were investigated by fluorescence spectroscopy, synchronous fluorescence spectroscopy, ultraviolet-visible absorption spectroscopy and circular dichroism spectroscopy (CD) under simulated physiological conditions. The experimental results showed that AAP effectively quenched the intrinsic fluorescence of BHb via static quenching. The number of binding sites, the binding constant Ka, and the thermodynamic parameters (ΔH○, ΔS○ and ΔG○) were measured at two different temperatures. Van der Waals’ interactions and hydrogen bonds were the predominant intermolecular forces in stabilizing the BHb-AAP complex. The experiment results confirmed micro-environmental and conformational changes of BHb in the presence of AAP. The α-helix content decreased, indicating that AAP destroys some of the hydrogen bonding networks in the polypeptide chain.

Study on the toxic interaction of methanol, ethanol and propanol against the bovine hemoglobin (BHb) on molecular level.

The toxic interaction of methanol, ethanol and propanol with bovine hemoglobin (BHb) at protein molecular level was studied by resonance light scattering (RLS), fluorescence, ultraviolet-visible absorption (UV-vis) and circular dichroism (CD) techniques. The experimental results showed that the three alcohols all had toxic effects on BHb and the effects increased along with the increasing alcohol dose. The results of RLS and fluorescence spectroscopy showed that alcohols can denature BHb. They changed the microenvironment of amino acid residues and led to molecular aggregation. The decreasing order of the influence is propanol, ethanol and methanol. The results of UV-vis and CD spectra revealed that alcohols led to conformational changes of BHb, including the loosening of the skeleton structure and the decreasing of α-helix in the second structure. The changes generated by propanol were much larger than those by methanol and ethanol.

Cyclic voltammetry: A new strategy for the evaluation of oxidative damage to bovine insulin

Research on protein oxidative damage may give insight into the nature of protein functions and pathological conditions. In this work, the oxidative damage of bovine insulin on Au electrode was investigated by cyclic voltammetry (CV). The experimental results show that there are two anodic peaks for the oxidative damage of bovine insulin, which arise from the oxidation of the exposed disulfide bond SSCYS7A,CYS7B, forming sulfenic acid RSOH (1.20 V, vs. SCE), sulfinic acid RSO2H and sulfonic acid RSO3H (1.35 V, vs. SCE). These in vitro findings not only demonstrate the applicability of CV in simulating/evaluating the oxidative damage of nonredox proteins but also find two promising candidates (two anodic peaks) for measuring insulin.

A Unique Approach to the Mobile Proton Model: Influence of Charge Distribution on Peptide Fragmentation

The cleavage processes of protonated peptides in mass spectrometry, described in the mobile proton model, are charge-directed and depend on the charge distribution around the cleavage sites. Previous studies experimentally verified the mobile proton model by changing peptide sequences. In this study, oxidation was applied to change the charge distribution of peptides, but the sequence was retained. Tandem mass spectrometry (MS/MS) and quantum chemical calculations at the B3LYP/6-31G(d) level were used to test the validity of the mobile proton model. The results showed prominent differences of peptide fragmentation efficiency caused by the charge distribution produced by various oxidation levels. Fragmentation efficiency curves coupled with the relative intensities of the fragments indicated that the cleavage of the peptide Ala-Arg-Arg-Ala (ARRA) became more and more difficult as O atoms were added. The relative charge ratios between C and N atoms in the amide bonds decreased with the increase of oxidation extent, suggesting that oxidation resulted in protons moving away from the amide bonds. The combined methods proposed here provide a unique approach to substantiate and refine the mobile proton model for peptide fragmentation.

The oxidative products of methionine as site and content biomarkers for peptide oxidation

Biomarkers for peptide/protein oxidation under oxidative stress (OS) hold both incredible application potential as well as significant challenges. In this article, liquid chromatography and mass spectrometry were applied to establish a new method for evaluating the oxidation site and degree of peptide oxidized, with its oxidative product serving as biomarker. In the three model peptides, peptide FMRF (containing a methionine) was prone to undergo oxygen addition under UV/H2O2 oxidization, forming a sulfoxide (FM(O)RF) with a stable chromatographic peak separate from the model peptides. The oxidation content of FMRF, expressed as SFM(O)RF/(SFM(O)RF + SFMRF), is positively correlated with oxidation time. Based on sequence analysis of FM(O)RF, the oxidation mechanism (site and extent) of FMRF under UV/H2O2 oxidization was explicitly clarified. By comparing the specific injury to each model peptide, we found that the oxidative products of Met‐containing peptides are good biomarkers for OS. This research not only expands the range of biomarkers for OS, but also provides an efficient and accurate method for evaluating oxidation damage to peptides and even proteins. Copyright

A new biomarker of protein oxidation degree and site using angiotensin as the target by MS

Hydroxyl radicals generated from Fenton reaction were used to damage the angiotensin. The oxidative damage degree and sites of peptides were measured by HPLC-MS and MS/MS. Experimental results proved that the oxidative damage degree increased with longer reaction time. The results also showed that the side chains of phenylalanine and tyrosine in angiotension can be attacked by hydroxyl radicals to form the oxidative products. A new strategy was established to monitor the oxidative degree and sites of peptides and laid the foundation for protein oxidation. This method can be used to investigate the mechanism of protein oxidative damage caused by oxidative stress which is induced by environmental pollutants and physiological activities. There will also be a wide application in the research of pathogenesis of some disease related to oxidative stress.

The charge ratio between O and N on amide bonds: A new approach to the mobile proton model

The influence of charge distribution on the cleavage of the peptides was investigated by fragmentation efficiency curves and quantum chemical calculations in order to clarify the fragmentation mechanism in this paper. The peptide Arg-Gly-Asp-Cys (RGDC) was oxidized to change the charge distribution, but its main sequence was retained. Under this study, it was illustrated that the fragmentation of the peptide RGDC became easier with each addition of an O atom to the Cys hydrosulfide group and the relative charge ratios between O and N (QO/QN) in the amide bonds had much to do with the cleavage of the peptide RGDC. For each amide bond, the situations coincided with overall conclusion: the increase of the QO/QN values results in a higher fragmentation efficiency and vice versa. The methods which combined fragmentation efficiency curves with the charge distribution of peptides provided a way to refine the mobile proton model for peptide fragmentation and to probe the discrepant fragmentation of peptides in peptide/protein identification.

The relative charge ratio between C and N atoms in amide bond acts as a key factor to determine peptide fragment efficiency in different charge states.

The influence of charge state on the peptide dissociation behavior in tandem mass spectrometry (MS/MS) is worthy of discussion. Comparative studies of singly- and doubly-protonated peptide molecules are performed to explore the effect and mechanism of charge state on peptide fragmentation. In view of the charge-directed cleavage of protonated peptides described in the mobile proton model, radiolytic oxidation was applied to change the charge distribution of peptides but retain the sequence. Experimental studies of collision energy-dependent fragmentation efficiencies coupled with quantum chemical calculations indicated that the cleavage of ARRA and its side-chain oxidation products with oxygen atoms added followed a trend that doubly-protonated peptides fragment more easily than singly-protonated forms, while the oxidation product with the guanidine group deleted showed the opposite trend. By analyzing the charge distribution around the amide bonds, we found that the relative charge ratios between C and N atoms (QC/QN) in the amide bonds provided a reasonable explanation for peptide fragmentation efficiencies. An increase of the QC/QN value of the amide bond means that a peptide fragments more easily, and vice versa. The results described in this paper provide an experimental and calculation strategy for predicting peptide fragmentation efficiency.