Melanie L. Lancaster

Limited ecological connectivity of an arboreal marsupial across a forest/plantation landscape despite apparent resilience to fragmentation

Demographic and genetic replenishment of populations through the exchange of individuals is essential for their persistence. Habitat loss and fragmentation can reduce the permeability of landscapes, hinder dispersal and compromise the genetic integrity of populations over time. We examined ecological connectivity in an arboreal marsupial, the common ringtail possum (Pseudocheirus peregrinus) in fragmented forests of southeastern Australia. This species is potentially robust to fragmentation based on its presence in degraded landscapes and known use of plantations for foraging and nesting. Using 312 individuals screened at 15 microsatellites, we measured dispersal and gene flow across seven native Eucalyptus forest remnants surrounded by exotic Pinus radiata plantations and three sites within a large continuous forest. The permeability of the pine matrix to dispersing possums was significantly lower than that of the native forest. Small, isolated patches exhibited signatures of genetic drift, having lower heterozygosity and allelic richness than possums in large patches. Most (87%) possums were born in their sampled patch or dispersed only short distances into neighbouring remnants. The continuous forest was identified as an important source of immigrants only for proximate patches (within 2.5 km), thus emphasizing for the common ringtail possum and more specialized arboreal mammals the need to conserve large, proximate forest remnants. Our findings highlight the importance of using genetic tools to understand the long‐term biological consequences of fragmentation for effective management.

Fur seals at Macquarie Island: post-sealing colonisation, trends in abundance and hybridisation of three species

Commercial sealers exterminated the original fur seal population at Macquarie Island in the early 1800s. The first breeding record since the sealing era was not reported until March 1955. Three species of fur seal now occur at Macquarie Island, the Antarctic (Arctocephalus gazella), subantarctic (A. tropicalis) and New Zealand (A. forsteri) fur seal. Census data from 54 breeding seasons in the period 1954–2007 were used to estimate population status and growth for each species. Between the 1950s and 1970s, annual increases in pup production for the species aggregate were low. Between 1986 and 2007, pup production of Antarctic fur seals increased by about 8.8% per year and subantarctic fur seals by 6.8% per year. The New Zealand fur seal, although the most numerous fur seal species on Macquarie Island, has yet to establish a breeding population, due to the absence of reproductively mature females. Hybridisation among species is significant, but appears to be declining. The slow establishment and growth of fur seal populations on Macquarie Island appears to have been affected by its distance from major population centres and hence low immigration rates, asynchronous colonisation times of males and females of each species, and extensive hybridisation.

Australian fur seals establish haulout sites and a breeding colony in South Australia

Australian fur seals (Arctocephalus pusillus doriferus) breed on Bass Strait islands in Victoria and Tasmania. They have been recorded in South Australia (SA) for many years as non-breeding visitors and on Kangaroo Island frequently since 1988, mostly in breeding colonies of the New Zealand fur seal (A. forsteri) which is the most numerous pinniped in SA. Australian fur seals have displaced New Zealand fur seals from sections of the Cape Gantheaume colony on Kangaroo Island. North Casuarina Island produced 29 Australian fur seal pups in February 2008. Australian fur seal pups were larger than New Zealand fur seal pups in the same colony and have been identified genetically using a 263-bp fragment of the mitochondrial DNA control region. North Casuarina Island has been an important breeding colony of New Zealand fur seals, but pup numbers there decreased since 1992–93 (contrary to trends in SA for New Zealand fur seals), while numbers of Australian fur seals there have increased. This study confirms that Australian fur seals breed in SA. The two fur seal species compete for space onshore at several sites. Australian fur seals may compete for food with endangered Australian sea lions (Neophoca cinerea) because both are bottom feeders.

Single copy nuclear DNA markers for the onychophoran Phallocephale tallagandensis

For some species, particularly invertebrates, developing single copy nuclear markers is an expensive and time-consuming task that may result in few or no usable markers. This has proven true for Onychophora (velvet worms). Here we describe our PCR-based method of generating single copy nuclear markers in Onychophora—a phylum comprised of species generally regarded as rare and of high conservation value—for which suitable microsatellites have been difficult to obtain. We list 6 primer pairs, some of which amplify across genera, and demonstrate their utility in identifying strong population structure in the species Phallocephale tallagandensis.

Characterization of nine microsatellite loci from the endangered southern brown bandicoot (Isoodon obesulus) using 454 pyrosequencing

Nine polymorphic microsatellite markers were developed for a nationally endangered marsupial, the southern brown bandicoot (Isoodon obesulus) using a next generation sequencing approach. The nine markers were genotyped in 59 individuals from two distinct locations (the Mt Burr Range and the Mt Lofty Ranges) in South Australia. All loci showed Hardy–Weinberg equilibrium with the exception of one locus in the Mt Lofty population, possibly because of null alleles. No evidence of linkage disequilibrium was detected. These markers will provide valuable resources for future projects on the conservation genetics of southern brown bandicoots in Australia.

A direct benefit of native saltbush revegetation for an endemic lizard (Tiliqua rugosa) in southern Australia

Abstract. Land alteration for intensive agriculture has been a major cause of species decline and extinction globally. In marginal grazing regions of southern Australia, native perennial shrubs are increasingly being planted to supplement pasture feeding of stock. Such revegetation has the benefits of reducing erosion and salinity, and importantly, the potential provision of habitat for native fauna. We explored the use of revegetated native saltbush by the sleepy lizard (Tiliqua rugosa) an endemic Australian species common in the region. We repeatedly sampled revegetated saltbush throughout 2010 and 2011 for adults (n = 55) and juveniles (n = 26). Using genotypes from eight microsatellite loci, parents were assigned to half of all juveniles with high statistical confidence. Parents were sampled in the same patch of revegetated saltbush as their offspring, thus supporting the observation that juvenile sleepy lizards remain within the home range of their parents before dispersal. Most importantly, our findings indicate that revegetated saltbush provides important habitat for T. rugosa at significant life stages – before and during breeding for adults, and before dispersal for juveniles. We conclude that revegetation using simple, monoculture plantations provides beneficial habitat for T. rugosa and may also be beneficial habitat for other native species in human-altered agricultural landscapes.

Genetic consequences of forest fragmentation by agricultural land in an arboreal marsupial

ContextIncreasing demands on land for agriculture have resulted in large-scale clearance and fragmentation of forests globally. In fragmented landscapes, species that tolerate or exploit the matrix will persist, while those that do not, frequently decline. Knowledge of matrix use is therefore critical to predicting extinction proneness of species in modified landscapes and defining the value of land for conservation management.ObjectivesIn a fragmented landscape consisting of seven remnant patches surrounded by agricultural land and a large Eucalyptus forest, we explored (i) population connectivity of common ringtail possums, Pseudocheirus peregrinus, to determine the permeability of the agricultural matrix, and (ii) genetic consequences of forest fragmentation.Methods238 common ringtail possums were screened at 14 microsatellite markers and analysed using a range of genetic techniques.ResultsWe observed significant genetic differentiation among all patches and limited dispersal through the agricultural matrix, even between neighbouring patches. Consequences of this were a six- to ten-fold increase in genetic dissimilarity over an equivalent geographic distance across patches compared with sites in the continuous forest and a significant reduction in genetic diversity, particularly in patches that were geographically more isolated from their neighbours.ConclusionsWe conclude that the agricultural matrix has a number of characteristics that make it unsuitable for facilitating movement of possums through this landscape, and recommend several management strategies to mitigate the impacts of fragmentation on this and other arboreal species for their conservation.

Delineation of conservation units in an endangered marsupial, the southern brown bandicoot (Isoodon obesulus obesulus), in South Australia/western Victoria, Australia

Abstract. Conservation programs for threatened species are greatly benefiting from genetic data, for their power in providing knowledge of dispersal/gene flow across fragmented landscapes and for identifying populations of high conservation value. The endangered southern brown bandicoot (Isoodon obesulus obesulus) has a disjunct distribution range in South Australia, raising the possibility that populations of the subspecies may represent distinct conservation units. In the current study, we used a combination of 14 microsatellite and two mitochondrial sequence markers to investigate the phylogeography and population structure of I. o. obesulus in South Australia and south-western Victoria, with the aim of identifying any potential evolutionarily significant units and management units relevant to conservation management. Our phylogenetic/population analyses supported the presence of two distinct evolutionary lineages of I. o. obesulus. The first lineage comprised individuals from the Mount Lofty Ranges, Fleurieu Peninsula and Kangaroo Island. A second lineage comprised individuals from the south-east of South Australia and south-western Victoria. We propose that these two lineages represent distinct evolutionarily significant units and should be managed separately for conservation purposes. The findings also raise significant issues for the national conservation status of I. o. obesulus and suggest that the current subspecies classification needs further investigation.

Microsatellite markers for the Common ringtail possum (Pseudocheirus peregrinus) and their amplification in other Pseudocheirids.

Eleven microsatellite markers were developed for the Common ringtail possum, an arboreal marsupial abundant in fragmented forests of south‐eastern Australia. Loci were highly polymorphic (4–32 alleles per locus) and heterozygosity ranged from 0.66 to 1. Two loci deviated significantly from Hardy–Weinberg equilibrium proportions, possibly because of low‐frequency null alleles. These markers will be informative for examining patterns of gene flow, relatedness and mating systems within fragmented populations of the Common ringtail possum and have potential for use in other Pseudocheirids.

Effects of landscape matrix on population connectivity of an arboreal mammal, Petaurus breviceps.

Abstract Ongoing habitat loss and fragmentation is considered a threat to biodiversity as it can create small, isolated populations that are at increased risk of extinction. Tree‐dependent species are predicted to be highly sensitive to forest and woodland loss and fragmentation, but few studies have tested the influence of different types of landscape matrix on gene flow and population structure of arboreal species. Here, we examine the effects of landscape matrix on population structure of the sugar glider (Petaurus breviceps) in a fragmented landscape in southeastern South Australia. We collected 250 individuals across 12 native Eucalyptus forest remnants surrounded by cleared agricultural land or exotic Pinus radiata plantations and a large continuous eucalypt forest. Fifteen microsatellite loci were genotyped and analyzed to infer levels of population differentiation and dispersal. Genetic differentiation among most forest patches was evident. We found evidence for female philopatry and restricted dispersal distances for females relative to males, suggesting there is male‐biased dispersal. Among the environmental variables, spatial variables including geographic location, minimum distance to neighboring patch, and degree of isolation were the most important in explaining genetic variation. The permeability of a cleared agricultural matrix to dispersing gliders was significantly higher than that of a pine matrix, with the gliders dispersing shorter distances across the latter. Our results added to previous findings for other species of restricted dispersal and connectivity due to habitat fragmentation in the same region, providing valuable information for the development of strategies to improve the connectivity of populations in the future.