Mercy A. Olmstead

Uniform standards for genome databases in forest and fruit trees

TreeGenes and tree fruit Genome Database Resources serve the international forestry and fruit tree genomics research communities, respectively. These databases hold similar sequence data and provide resources for the submission and recovery of this information in order to enable comparative genomics research. Large-scale genotype and phenotype projects have recently spawned the development of independent tools and interfaces within these repositories to deliver information to both geneticists and breeders. The increase in next generation sequencing projects has increased the amount of data as well as the scale of analysis that can be performed. These two repositories are now working towards a similar goal of archiving the diverse, independent data sets generated from genotype/phenotype experiments. This is achieved through focused development on data input standards (templates), pipelines for the storage and automated curation, and consistent annotation efforts through the application of widely accepted ontologies to improve the extraction and exchange of the data for comparative analysis. Efforts towards standardization are not limited to genotype/phenotype experiments but are also being applied to other data types to improve gene prediction and annotation for de novo sequencing projects. The resources developed towards these goals represent the first large-scale coordinated effort in plant databases to add informatics value to diverse genotype/phenotype experiments.

Fruit Ripening has Little Influence on Grapevine Cold Acclimation

This four-year study tested whether the physiological demand of fruit ripening may interfere with grapevine cold acclimation in autumn or with midwinter hardiness. Three harvest time treatments were established in a mature vineyard of own-rooted Cabernet Sauvignon vines: clusters were removed after fruit set, at veraison, or after the first fall frost. Average yield of the late harvested vines varied from 4.2 to 5.1 kg/vine (7.5 to 9.2 t/ha) among years, and soluble solids varied from 23.4 to 25.6 Brix. The presence of fruit during ripening delayed leaf senescence, measured as chlorophyll decline. The fruit also tended to delay the senescence-associated decrease in photosynthesis. All vines showed typical patterns of autumn cold acclimation, midwinter hardiness, and spring deacclimation. Cold hardiness of buds, cane phloem, and cane xylem varied during winter depending on prevailing temperature, and during the coldest winter reached levels of −27°C for 50% bud damage and −28°C for the onset of xylem injury. Early fruit removal had no effect on cane nonstructural carbohydrates and, with few exceptions, failed to enhance cold hardiness. Depending on the year, early fruit removal improved bud hardiness on 5 to 15% and xylem hardiness on 8 to 38% of all measurement dates. On those dates, the early harvested vines tended to be 1 to 2°C hardier than the late harvested vines, irrespective of the time of crop removal. No trend was found for phloem hardiness. These results indicate that cropping, at least within commercially acceptable limits in regions with sufficiently long or warm growing seasons, rarely impacts cold acclimation and maximum hardiness. Grapevines appear to adjust seasonal leaf physiology to meet their carbon demand for both fruit ripening and cold acclimation.

Plastic Roof Materials as They Affect Bell Pepper Production in High Tunnels

ABSTRACT Because of high humidity and precipitation, protected cultivation of bell pepper (Capsicum annum L.) is needed to produce high-quality colored peppers. The goal of the study was to compare light transmittance of shade cloth materials: Solarig (140 and 172), clear polyethylene, and clear polyethylene plus Aluminet O (22%, 30%, and 60% solar reduction, respectively) for red bell pepper production. Plant growth, leaf nutrient content, fruit quality, and marketable yield were not affected by treatment. Roof materials in Florida should be selected based on availability, durability, and cost rather than sunlight reduction within the ranges used in this study.