Michael K. Saiki

Effects of Ambient Water Quality on the Endangered Lost River Sucker in Upper Klamath Lake, Oregon

Abstract Populations of the Lost River sucker Deltistes luxatus have declined so precipitously in the Upper Klamath Basin of Oregon and California that this fish was recently listed for federal protection as an endangered species. Although Upper Klamath Lake is a major refuge for this species, fish in the lake occasionally experience mass mortalities during summer and early fall. This field study was implemented to determine if fish mortalities resulted from degraded water quality conditions associated with seasonal blooms of phytoplankton, especially Aphanizomenon flos-aquae. Our results indicated that fish mortality did not always increase as water temperature, pH, and un-ionized ammonia concentration increased in Upper Klamath Lake. Little or no mortality occurred when these water quality variables attained their maximum values. On the other hand, an inverse relation existed between fish mortality and dissolved oxygen concentration. High mortality (>90%) occurred whenever dissolved oxygen concentration...

Relation of desert pupfish abundance to selected environmental variables in natural and manmade habitats in the Salton Sea basin

SynopsisWe assessed the relation between abundance of desert pupfish, Cyprinodon macularius, and selected biological and physicochemical variables in natural and manmade habitats within the Salton Sea Basin. Field sampling in a natural tributary, Salt Creek, and three agricultural drains captured eight species including pupfish (1.1% of the total catch), the only native species encountered. According to Bray–Curtis resemblance functions, fish species assemblages differed mostly between Salt Creek and the drains (i.e., the three drains had relatively similar species assemblages). Pupfish numbers and environmental variables varied among sites and sample periods. Canonical correlation showed that pupfish abundance was positively correlated with abundance of western mosquitofish, Gambusia affinis, and negatively correlated with abundance of porthole livebearers, Poeciliopsis gracilis, tilapias (Sarotherodon mossambica and Tilapiazillii), longjaw mudsuckers, Gillichthys mirabilis, and mollies (Poecilia latipinnaandPoecilia mexicana). In addition, pupfish abundance was positively correlated with cover, pH, and salinity, and negatively correlated with sediment factor (a measure of sediment grain size) and dissolved oxygen. Pupfish abundance was generally highest in habitats where water quality extremes (especially high pH and salinity, and low dissolved oxygen) seemingly limited the occurrence of nonnative fishes. This study also documented evidence of predation by mudsuckers on pupfish. These findings support the contention of many resource managers that pupfish populations are adversely influenced by ecological interactions with nonnative fishes.

Copper, Cadmium, and Zinc Concentrations in Juvenile Chinook Salmon and Selected Fish-Forage Organisms (Aquatic Insects) in the Upper Sacramento River, California

This study assessed the downstream extent andseverity of copper (Cu), cadmium (Cd), and zinc (Zn)contamination from acid mine drainage on juvenile chinook salmon(Oncorhynchus tshawytscha) and aquatic insects over aroughly 270-km reach of the Sacramento River below KeswickReservoir. During April–May 1998, salmon were collected fromfour sites in the river and from a fish hatchery that receiveswater from Battle Creek. Salmon from river sites were examinedfor gut contents to document their consumption of variousinvertebrate taxa, whereas salmon from river sites and thehatchery were used for metal determinations. Midge(Chironomidae) and caddisfly (Trichoptera) larvae and mayfly(Ephemeroptera) nymphs were collected for metal determinationsduring April–June from river sites and from Battle and Buttecreeks. The fish hatchery and Battle and Butte creeks served asreference sites because they had no history of receiving minedrainage. Salmon consumed mostly midge larvae and pupae (44.0%,damp-dry biomass), caddisfly larvae (18.9%), Cladocera (5.8%),and mayfly nymphs (5.7%). These results demonstrated thatinsects selected for metal determinations were important as fishforage. Dry-weight concentrations of Cu, Cd, and Zn weregenerally far higher in salmon and insects from the river thanfrom reference sites. Within the river, high metalconcentrations persisted as far downstream as South Meridian (thelowermost sampling site). Maximum concentrations of Cd (30.7 μg g-1) and Zn (1230 μg g-1),but not Cu (87.4 μg g-1), in insects exceeded amounts that other investigators reported as toxic when fed for prolonged periods to juvenile salmonids.

Trophic Relationships of Small Nonnative Fishes in a Natural Creek and Several Agricultural Drains Flowing into the Salton Sea, and Their Potential Effects on the Endangered Desert Pupfish

Abstract This study was conducted to characterize trophic relationships of small nonnative fishes and to determine if predation by these fishes contributes to the decline of desert pupfish (Cyprinodon macularius), an endangered cyprinodont on the verge of extinction. We sampled 403 hybrid Mozambique tilapias (Oreochromis mossambica by O. urolepis), 107 redbelly tilapias (Tilapia zillii), 32 longjaw mudsuckers (Gillichthys mirabilis), 182 western mosquitofish (Gambusia affinis), 222 sailfin mollies (Poecilia latipinna), 63 shortfin mollies (Poecilia mexicana), and 235 porthole livebearers (Poeciliopsis gracilis) from a natural creek and four agricultural drains during September 1999–December 2001. Evidence of piscivory was in gastrointestinal contents of 14 hybrid Mozambique tilapias, 3 redbelly tilapias, 10 longjaw mudsuckers, 8 western mosquitofish, 2 sailfin mollies, and 8 porthole livebearers. Although digestion often was too advanced for identification of fishes consumed by nonnative fishes, remains of desert pupfish were in gastrointestinal contents of a longjaw mudsucker. Our findings, along with field evidence from other studies that inverse relationships exist between abundances of desert pupfish and nonnative species, are consistent with the hypothesis that predation by nonnative species is contributing to decline of desert pupfish. We suspect that competitive interactions with nonnative fishes might also adversely affect abundance of desert pupfish.

RELATION BETWEEN SPECIES ASSEMBLAGES OF FISHES AND WATER QUALITY IN SALT PONDS AND SLOUGHS IN SOUTH SAN FRANCISCO BAY

Abstract This study was conducted to characterize fishery resources inhabiting salt-evaporation ponds and sloughs in South San Francisco Bay, and to identify key environmental variables that influence distribution of fishes. The ponds, which were originally constructed and operated for commercial production of salt, have undergone preliminary modifications (installation of culverts, gates, and other water-control structures) in preparation for full restoration to mostly tidal wetlands over the next 2 decades. We sampled fish from two salt-pond complexes (Alviso complex and Eden Landing complex), each consisting of several pond systems and their associated sloughs. Cluster analysis of species of fish indicated that at least two species assemblages were present, one characteristic of ponds and the other characteristic of sloughs and slough-like ponds. The slough-like ponds exhibited water-quality conditions (especially salinity) that resembled conditions found in the sloughs. Pond fishes were represented by 12 species, whereas slough fishes were represented by 22 species. Except for bay pipefish (Syngnathus leptorhynchus), which was unique to ponds, all species present in ponds also were in sloughs and slough-like ponds. These results indicated that species of fish in ponds originated from the sloughs. According to canonical-discriminant analysis, four environmental variables were useful for discriminating between the two species assemblages. Most discriminatory power was contributed by the index of habitat connectivity, a measure of minimum distance that a fish must travel to reach a particular pond from the nearest slough. Apparently, as fish from sloughs enter and move through interconnected salt ponds, environmental stress factors increase in severity until only the more tolerant species remain. The most likely source of stress is salinity, because this variable was second in importance to the index of habitat connectivity in discriminating between the two species assemblages. Water temperature and concentration of dissolved oxygen also seemingly influenced spatial distribution of fishes, although they were less important than salinity.

DIFFERENCES IN BENTHIC MACROINVERTEBRATE ASSEMBLAGES ASSOCIATED WITH A BLOOM OF DIDYMOSPHENIA GEMINATA IN THE LOWER AMERICAN RIVER, CALIFORNIA

Abstract Didymo (Didymosphenia geminata) is a freshwater colonial diatom native to northern latitude lakes and streams and, until recently, was considered indicative of high-altitude, low-temperature, nutrient-poor habitats experiencing little anthropogenic impact. In recent years, however, this diatom has expanded its geographic distribution into lower latitudes and altitudes. In early 2012, we discovered a bloom of didymo in the Lower American River below Nimbus Dam in Sacramento County, California. Due to production of large masses of extracellular stalks that can smother stream substrates, and its proximity to a salmonid habitat restoration project, discovery of didymo prompted us to conduct a study of its effects on benthic macroinvertebrates, an important food source for juvenile salmonids. In May and June 2012, we sampled benthic macroinvertebrates in a reach of the main channel where didymo was abundant and in a nearby reach on a side channel where environmental conditions were similar but didymo was seemingly rare or absent. We found significant differences in taxonomic composition and abundance of macroinvertebrates inhabiting the two reaches. Higher numbers of Chironomidae (midges), Gammaridae (scuds), Hirudinidae (leeches), Hydroptilidae (microcaddisflies), and total macroinvertebrates were recorded in the main channel. In contrast, higher numbers of Baetidae (baetid mayflies), Glossosomatidae (saddlecase caddisflies), and Tipulidae (crane flies), along with a higher percentage of combined Ephemeroptera, Plecoptera, and Trichoptera (%EPT), were recorded in the side channel. We also recorded higher values for three common measures of taxonomic diversity (Margalef richness, Pielous evenness, Shannon-Wiener diversity) in the side channel. From these initial observations, we tentatively concluded that the didymo bloom has influenced benthic macroinvertebrate composition in the Lower American River.

Effects of an agricultural drainwater bypass on fishes inhabiting the Grassland Water District and the lower San Joaquin River, California

Abstract The Grassland Bypass Project, which began operation in September 1996, was conceived as a means of diverting brackish selenium-contaminated agricultural drainwater away from canals and sloughs needed for transporting irrigation water to wetlands within the Grassland Water District (the Grasslands), Merced County, California. The seleniferous drainwater is now routed into the San Luis Drain for conveyance to North Mud Slough and eventual disposal in the San Joaquin River. The purpose of this study was to determine the extent to which the Grassland Bypass Project has affected fishes in sloughs and other surface waters within and downstream from the Grasslands. During September–October 1997, 9,795 fish representing 25 species were captured at 13 sampling sites. Although several species exhibited restricted spatial distributions, association analysis and cluster analysis failed to identify more than one fish species assemblage inhabiting the various sites. However, seleniferous drainwater from the Sa...

HABITAT REQUIREMENTS OF THE ENDANGERED CALIFORNIA FRESHWATER SHRIMP (SYNCARIS PACIFICA) IN LAGUNITAS AND OLEMA CREEKS, MARIN COUNTY, CALIFORNIA, USA

Abstract This study was conducted to better understand the habitat requirements and environmental limiting factors of Syncaris pacifica, the California freshwater shrimp. This federally listed endangered species is native to perennial lowland streams in a few watersheds in northern California. Field sampling occurred in Lagunitas and Olema creeks at seasonal intervals from February 2003 to November 2004. Ten glides, five pools, and five riffles served as fixed sampling reaches, with eight glides, four pools, and four riffles located in Lagunitas Creek and the remainder in Olema Creek. A total of 1773 S. pacifica was counted during this study, all of which were captured along vegetated banks in Lagunitas Creek. Syncaris pacifica was most numerous in glides (64%), then in pools (31%), and lastly in riffles (5%). According to logistic regression analysis, S. pacifica was mostly associated with submerged portions of streambank vegetation (especially overhanging vegetation such as ferns and blackberries, emergent vegetation such as sedge and brooklime, and fine roots associated with water hemlock, willow, sedge, and blackberries) along with low water current velocity and a sandy substrate. These seemingly favorable habitat conditions for S. pacifica were present in glides and pools in Lagunitas Creek, but not in Olema Creek.

Unusual Dominance by Desert Pupfish (Cyprinodon macularius) in Experimental Ponds within the Salton Sea Basin

Abstract In October 2006, months after shallow experimental ponds in the Salton Sea Basin were filled with water from the Alamo River and Salton Sea, fish were observed in several ponds, although inlets had been screened to exclude fish. During October 2007–November 2009, nine surveys were conducted using baited minnow traps to document species and relative abundance of fish. Surveys yielded 3,620 fish representing five species. Desert pupfish (Cyprinodon macularius), the only native species encountered, was the most numerous and comprised >93% of the catch. Nonnative species included western mosquitofish (Gambusia affinis, 4.1%), sailfin molly (Poecilia latipinna, 2.8%), and tilapia (a mixture of hybrid Mozambique tilapia Oreochromis mossambicus × O. urolepis and redbelly tilapia Tilapia zillii, <0.1%). Dominance by desert pupfish, which persisted over our 2 years of study, was unusual because surveys conducted in nearby agricultural drains yielded relatively few desert pupfish.

Total Selenium in Irrigation Drain Inflows to the Salton Sea, California, April 2009

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