Michelle R. Heupel

Extinction risk and conservation of the world’s sharks and rays

The rapid expansion of human activities threatens ocean-wide biodiversity. Numerous marine animal populations have declined, yet it remains unclear whether these trends are symptomatic of a chronic accumulation of global marine extinction risk. We present the first systematic analysis of threat for a globally distributed lineage of 1,041 chondrichthyan fishes—sharks, rays, and chimaeras. We estimate that one-quarter are threatened according to IUCN Red List criteria due to overfishing (targeted and incidental). Large-bodied, shallow-water species are at greatest risk and five out of the seven most threatened families are rays. Overall chondrichthyan extinction risk is substantially higher than for most other vertebrates, and only one-third of species are considered safe. Population depletion has occurred throughout the world’s ice-free waters, but is particularly prevalent in the Indo-Pacific Biodiversity Triangle and Mediterranean Sea. Improved management of fisheries and trade is urgently needed to avoid extinctions and promote population recovery. DOI: http://dx.doi.org/10.7554/eLife.00590.001

Automated acoustic tracking of aquatic animals: scales, design and deployment of listening station arrays

The recent introduction of low-cost, moored data-logging acoustic receivers has provided opportunities for tracking marine organisms over small (hundreds of metres) and large scales (hundreds of kilometres). Acoustic receivers have been deployed in many different environments to examine specific hypotheses regarding the movement of aquatic species. This technology provides many advantages for studying aquatic animal movement patterns, but also has limitations and provides unique difficulties for users. Study design, applications, advantages and limitations are discussed with examples from past and current studies. Data management and analysis techniques are in their infancy and few standardised techniques exist. Complications with data management and potential data analysis techniques are discussed. Examples from the literature are utilised wherever possible to provide useful references.

Adaptive management of the Great Barrier Reef: A globally significant demonstration of the benefits of networks of marine reserves

The Great Barrier Reef (GBR) provides a globally significant demonstration of the effectiveness of large-scale networks of marine reserves in contributing to integrated, adaptive management. Comprehensive review of available evidence shows major, rapid benefits of no-take areas for targeted fish and sharks, in both reef and nonreef habitats, with potential benefits for fisheries as well as biodiversity conservation. Large, mobile species like sharks benefit less than smaller, site-attached fish. Critically, reserves also appear to benefit overall ecosystem health and resilience: outbreaks of coral-eating, crown-of-thorns starfish appear less frequent on no-take reefs, which consequently have higher abundance of coral, the very foundation of reef ecosystems. Effective marine reserves require regular review of compliance: fish abundances in no-entry zones suggest that even no-take zones may be significantly depleted due to poaching. Spatial analyses comparing zoning with seabed biodiversity or dugong distributions illustrate significant benefits from application of best-practice conservation principles in data-poor situations. Increases in the marine reserve network in 2004 affected fishers, but preliminary economic analysis suggests considerable net benefits, in terms of protecting environmental and tourism values. Relative to the revenue generated by reef tourism, current expenditure on protection is minor. Recent implementation of an Outlook Report provides regular, formal review of environmental condition and management and links to policy responses, key aspects of adaptive management. Given the major threat posed by climate change, the expanded network of marine reserves provides a critical and cost-effective contribution to enhancing the resilience of the Great Barrier Reef.

Microsatellite and mitochondrial DNA analyses of the genetic structure of blacktip shark (Carcharhinus limbatus) nurseries in the northwestern Atlantic, Gulf of Mexico, and Caribbean Sea

We investigated the genetic structure of blacktip shark (Carcharhinus limbatus) continental nurseries in the northwestern Atlantic Ocean, Gulf of Mexico, and Caribbean Sea using mitochondrial DNA control region sequences and eight nuclear microsatellite loci scored in neonate and young‐of‐the‐year sharks. Significant structure was detected with both markers among nine nurseries (mitochondrial ΦST = 0.350, P < 0.001; nuclear ΦST = 0.007, P < 0.001) and sharks from the northwestern Atlantic, eastern Gulf of Mexico, western Gulf of Mexico, northern Yucatan, and Belize possessed significantly different mitochondrial DNA haplotype frequencies. Microsatellite differentiation was limited to comparisons involving northern Yucatan and Belize sharks with nuclear genetic homogeneity throughout the eastern Gulf of Mexico, western Gulf of Mexico, and northwestern Atlantic. Differences in the magnitude of maternal vs. biparental genetic differentiation support female philopatry to northwestern Atlantic, Gulf of Mexico, and Caribbean Sea natal nursery regions with higher levels of male‐mediated gene flow. Philopatry has produced multiple reproductive stocks of this commercially important shark species throughout the range of this study.

Estimation of Shark Home Ranges using Passive Monitoring Techniques

We examined a population of blacktip sharks, Carcharhinus limbatus, within a coastal nursery area to define how individuals use the nursery habitat throughout the summer. We used a series of acoustic hydrophones to passively monitor the movement patterns of sharks for periods up to 167 days. We used passive monitoring data to calculate home range estimates using minimum convex polygon (MCP) and fixed kernel estimators. MCP calculated the extent of an individuals range. Kernel estimates provided information regarding the utilization of space within the home range including core area (50% kernel) and larger excursions outside the core area (95% kernel). Individuals within the nursery area typically used a consistently small core area. All sharks monitored in the study site underwent a home range expansion during the month of July, suggesting a synchronous population-level change in habitat use. This change in habitat use was reflected in all home range calculations. Passive monitoring revealed that young sharks remain within the nursery area for up to 6 months. The long-term use of this nursery area reflects its critical importance to young blacktip sharks.

The importance of research and public opinion to conservation management of sharks and rays: a synthesis

Growing concern for the worlds shark and ray populations is driving the need for greater research to inform conservation management. A change in public perception, from one that we need to protect humans from sharks to one where we must protect sharks from humans, has added to calls for better management. The present paper examines the growing need for research for conservation management of sharks and rays by synthesising information presented in this Special Issue from the 2010 Sharks International Conference and by identifying future research needs, including topics such as taxonomy, life history, population status, spatial ecology, environmental effects, ecosystem role and human impacts. However, this biological and ecological research agenda will not be sufficient to fully secure conservation management. There is also a need for research to inform social and economic sustainability. Effective conservation management will be achieved by setting clear priorities for research with the aid of stakeholders, implementing well designedresearchprojects,buildingthecapacityforresearch,andclearlycommunicatingtheresultstostakeholders.Ifthis can be achieved, it will assure a future for this iconic group, the ecosystems in which they occur and the human communities that rely on them.

Importance of prey density in relation to the movement patterns of juvenile blacktip sharks (Carcharhinus limbatus) within a coastal nursery area

Previous research suggests that nursery areas provide an abundant food source as well as protection from predation for young sharks, and that these benefits are the reasons they use these areas. This study examined the abundance of prey species within a known nursery area, Terra Ceia Bay, Florida, and compared those data with the amount of time blacktip sharks spent within various geographic zones within the nursery. The most abundant prey species within the study site were pinfish, Lagodon rhomboides, pigfish, Orthopristis chrysoptera, spotfin mojarra, Eucinostomus argenteus, and silver perch, Bairdiella chrysoura. Prey species were found to be most abundant in the mid to southern portion of the nursery area, whereas sharks spent the majority of their time within the northern portion of the study site. There was no correlation between the amount of time sharks (as a whole and by individual) spent within a geographic zone and the abundance of prey species within that area. These results suggest that prey abundance is not the main factor directing the movement patterns and habitat choice of juvenile Carcharhinus limbatus within Terra Ceia Bay. Predator avoidance may be more important in the use of the nursery grounds by these young animals than prey abundance.

Distribution and Habitat Partitioning of Immature Bull Sharks (Carcharhinus leucas) in a Southwest Florida Estuary

The distribution and salinity preference of immature bull sharks (Carcharhinus leucas) were examined based on the results of longline surveys in three adjacent estuarine habitats in southwest Florida: the Caloosahatchee River, San Carlos Bay, and Pine Island Sound. Mean sizes were significantly different between each of these areas indicating the occurrence of size-based habitat partitioning. Neonate and young-of-the-year animals occurred in the Caloosahatchee River and juveniles older than 1 year occurred in the adjacent embayments. Habitat partitioning may reduce intraspecific predation risk and increase survival of young animals. Classification tree analysis showed that both temperature and salinity were important factors in determining the occurrence and catch per unit effort (CPUE) of immatureC. leucas. The CPUE of <1 year oldC. leucas was highest at temperatures over 29°C and in areas with salinities between 7‰ and 17.5‰ Although they are able to osmoregulate in salinities from fresh to fully marine, youngC. leucas may have a salinity preference. Reasons for this preference are unknown, but need to be further investigated.

Key Questions in Marine Megafauna Movement Ecology

It is a golden age for animal movement studies and so an opportune time to assess priorities for future work. We assembled 40 experts to identify key questions in this field, focussing on marine megafauna, which include a broad range of birds, mammals, reptiles, and fish. Research on these taxa has both underpinned many of the recent technical developments and led to fundamental discoveries in the field. We show that the questions have broad applicability to other taxa, including terrestrial animals, flying insects, and swimming invertebrates, and, as such, this exercise provides a useful roadmap for targeted deployments and data syntheses that should advance the field of movement ecology.

Large–scale movement and reef fidelity of grey reef sharks

Despite an Indo-Pacific wide distribution, the movement patterns of grey reef sharks (Carcharhinus amblyrhynchos) and fidelity to individual reef platforms has gone largely unstudied. Their wide distribution implies that some individuals have dispersed throughout tropical waters of the Indo-Pacific, but data on large-scale movements do not exist. We present data from nine C. amblyrhynchos monitored within the Great Barrier Reef and Coral Sea off the coast of Australia. Shark presence and movements were monitored via an array of acoustic receivers for a period of six months in 2008. During the course of this monitoring few individuals showed fidelity to an individual reef suggesting that current protective areas have limited utility for this species. One individual undertook a large-scale movement (134 km) between the Coral Sea and Great Barrier Reef, providing the first evidence of direct linkage of C. amblyrhynchos populations between these two regions. Results indicate limited reef fidelity and evidence of large-scale movements within northern Australian waters.