Milan Geršl

Measuring biomass and carbon stock in resprouting woody plants.

Resprouting multi-stemmed woody plants form an important component of the woody vegetation in many ecosystems, but a clear methodology for reliable measurement of their size and quick, non-destructive estimation of their woody biomass and carbon stock is lacking. Our goal was to find a minimum number of sprouts, i.e., the most easily obtainable, and sprout parameters that should be measured for accurate sprout biomass and carbon stock estimates. Using data for 5 common temperate woody species, we modelled carbon stock and sprout biomass as a function of an increasing number of sprouts in an interaction with different sprout parameters. The mean basal diameter of only two to five of the thickest sprouts and the basal diameter and DBH of the thickest sprouts per stump proved to be accurate estimators for the total sprout biomass of the individual resprouters and the populations of resprouters, respectively. Carbon stock estimates were strongly correlated with biomass estimates, but relative carbon content varied among species. Our study demonstrated that the size of the resprouters can be easily measured, and their biomass and carbon stock estimated; therefore, resprouters can be simply incorporated into studies of woody vegetation.

Detection of mycobacteria in the environment of the Moravian Karst (Bull Rock Cave and the relevant water catchment area): the impact of water sediment, earthworm castings and bat guano

The presence of mycobacteria was studied in Bull Rock Cave (“Byci skala”) and the water catch - ment area of Jedovnice Brook (“Jedovnicky potok”) using direct microscopy after Ziehl-Neelsen (ZN) staining, culture examination and molecular techniques. Mycobacteria were detected in 47.1% of a total of 68 samples. The mycobacterial genes hsp65 and dnaA were detected and sequenced in 37 (74.0%) out of the 50 cave environmental samples and in 10 (55.6%) out of the 18 samples of water catchment sediments. Nine species of slowly growing mycobacteria ( M. terrae , M. arupense , M. gordonae , M. lentiflavum , M. parascrofulaceum , M. parmense , M. sas - katchewanense , M. simiae and M. xenopi ) and two subsp. ( M. avium subsp. avium and M. avium subsp. hominis - suis ) were detected. Fourteen species of rapidly growing mycobacteria ( M. chelonae , M. chubuense , M. poriferae , M. flavescens , M. fortuitum , M. porcinum , M. rhodesiae , M. gilvum , M. goodii , M. peregrinum , M. mageritense , M. vanbaalenii , M. gadium and M. insubricum ) were detected. The highest mycobacterial presence was docu- mented by ZN staining and/or culture examinations in earthworm castings and bat guano (73.3% positivity out of the 15 samples) in the cave environment and in the water sediments collected under the outflow from the wastewater treatment plants (77.8% positivity out of nine samples). The highest total organic carbon (TOC) was detected in wooden material and earthworm castings with pH values between 5.0 and 7.7 in the cave environment and in water sediments collected under the outflow from the wastewater treatment plants with pH between 5.8 and 7.0. It could be concluded that the karst cave environment with its running surface water contaminated with different microorganisms or chemical substances creates favourable conditions not only for animals (especially earthworms) but also for mycobacteria. This fact is also demonstrated by the presence of these mycobacteria in the cave environment mainly in earthworm castings and bat guano.

Influx and concentration of triazine pesticides in the Amaterska cave system, Moravian Karst, Czech Republic

PurposeThe aim of this study was to detect three triazine pesticides and their metabolites in the drip water and the sediment of the Amaterska cave system. Diversity of the bacterial community in the sediment was also assessed, and the potential role of bacteria in degradation of these pesticides was evaluated.Materials and methodsTriazines and their metabolites were analyzed in the soil, drip water, and sediment of the Amaterska cave system area in seven sampling sites (S1–S7) based on the above ground cover that included forest, permanent grassland, and agriculture cropland. The bacterial community in the cave sediments (S1–S6) was also analyzed using the Illumina sequencing of the V3 and V4 regions of 16S rDNA.Results and discussionTriazines were present in the soil and drip water in all sites below grassland and agricultural land but not under the forest area. Only atrazine metabolites were detected in the surface soil. In contrast, atrazine was detected in all cave sediments regardless of above ground cover, and this is likely due to the occasional alluvial influx. The overall prevalence of bacteria potentially capable of atrazine degradation in the cave sediment ranged from 13.4 to 64.0% of the entire bacterial community. The concentrations of atrazine in the cave sediment were 16 to 70 times higher than in those in drip water.ConclusionsHigh concentrations of atrazine in the cave sediment indicate a slow degradation rate of triazines in the cave likely due to low temperatures and absence of photolysis. The main source of atrazine in the Amaterska cave system is likely not drip water but the alluvial influx. Bacteria potentially capable of triazine degradation in the cave sediment were detected; however, their role in this process remains to be investigated.

Nontuberculous mycobacteria in the environment of Hranice Abyss, the world’s deepest flooded cave (Hranice karst, Czech Republic)

Nontuberculous mycobacteria (NTM) are widely distributed in the environment. On one hand, they are opportunistic pathogens for humans and animals, and on the other hand, they are effective in biodegradation of some persistent pollutants. Following the recently recorded large abundance of NTM in extreme geothermal environments, the aim of the study was to ascertain the occurrence of NTM in the extreme environment of the water zone of the Hranice Abyss (HA). The HA mineral water is acidic, with large concentrations of free CO2, and bacterial slimes creating characteristic mucilaginous formations. Both culture and molecular methods were used to compare the mycobacterial diversity across the linked but distinct ecosystems of HA and the adjacent Zbrašov Aragonite Caves (ZAC) with consideration of their pathogenic relevance. Six slowly growing NTM species (M. arupense, M. avium, M. florentinum, M. gordonae, M. intracellulare) and two rapidly growing NTM species (M. mucogenicum, M. sediminis) were identified in the water and in the dry zones at both sites. Proteobacteria were dominant in all the samples from both the HA and the ZAC. The bacterial microbiomes of the HA mineral water and HA slime were similar, but both differed from the microbiome in the ZAC mineral water. Actinobacteria, a phylum containing mycobacteria, was identified in all the samples at low proportional abundance. The majority of the detected NTM species belong among environmental opportunistic pathogens.

The Role of Mineral Phases in the Biogas Production Technology

Abstract In the field of electric power industry, renewable energy sources, fertilisers, reclamation, and waste management, biomass is widely studied and used. Minerals are present in every step of biogas transformation, but their forms, occurrence, and composition have not been studied yet. However, there is no comprehensive study research that would address the presence of mineral phases in the process of biogas production. This aim of the study is determination of the amount and composition of the mineral phases present in fermentation residues resulting from different production technologies. Digestate mineral composition was analysed using 46 samples from agricultural biogas plants and university testing biogas reactor. The majority of samples contained the amorphous phase. Minority phases consisted of quartz, albite, orthoclase, muscovite, and amphibole. Opal-CT was found in eleven samples (1.26 to 12.1% wt.). The elements present in gas-liquid fluids or in liquids, gases and aerosols within the biogas technology system may create mineral phases, namely the amorphous phase or the crystalline phase under certain conditions. Opal-CT may enter the fermenter as part of plant tissues referred to as phytoliths, or as an unwanted admixture of different origin. It may also originate from the present amorphous SiO2.

VYUŽITÍ TERÉNNÍHO RENTGENOFLUORESCENČNÍHO SPEKTROMETRU PRO ANALÝZU ORGANOMINERÁLNÍCH MATRICÍ

The portable X-ray-fluorescence analyzer (Innov-X Systems, Inc.) is routinely used as screening tool in geochemical and environmental mapping. The applicability in organomineral matrices was not tested yet. The biogas is produced from maize silage, grass silage, beef and pig manure and slurry, sewage sludge, organic wastes from food industries, organic household waste. As the main result the digestate (anaerobic digestion residues) is manufactured. The digestate is used as fertilizer and/or fuel. In the presented study the three reference materials and three samples of the digestate were analyzed 50 times each. RFA analytical conditions for reference material and samples: Innov-X Systems, Inc., Delta, time measurement: 1. beam: energy 1–40 kV, time 140 s.; 2. Beam: energy 2–10 kV, time 140 s., analytical mode: geochem2. Statistical evaluation of the data set allowed comparison among accuracy and reproducibility for organomineral matrices. The results are in good correlation with data from standard elemental analyses. The presented results has proved very good or satisfactory reproducibility for fourteen elements (Al, S, K, Ca, Mn, Fe, Cu, Zn, Sr, Zr, Mo, Ag, Pb, Th ). The results for three elements (Al, S, Fe) in digestates have high reproducibility, for the Ag, Mn, Mo, Sr, Zr, Th have good reproducibility. The portable XRF is suitable for the mineral fraction characterization in the agricultural materials such as composts, digestates and silages.