Mirco Boschetti

Multi-year monitoring of rice crop phenology through time series analysis of MODIS images

Precise phenological calendars, for each cultivated species and variety, are necessary both to highlight anomalous agronomic situations and to feed crop models. This study, conducted in the Italian rice area, focuses on the evaluation of the contribution of remote sensing satellite data to providing phenological information on rice cropping systems. A time series of 5 years (2001–2005) of the Moderate Resolution Imaging Spectrometer (MODIS) Normalized Difference Vegetation Index (NDVI) 16-day composites was analysed with the TIMESAT program in order to automatically retrieve key phenological information such as the start of season (emergence), peak (heading) and end of season (maturity). The procedure involved two steps: (1) interpolation and smoothing of MODIS NDVI temporal profile and (2) the analysis of a temporal signal for the extraction of the phenological metrics. The remote sensing estimates were evaluated using information regarding cultivated variety, sowing dates, management and production directly acquired from rice farmers. A good correlation (R 2 = 0.92, n = 24) has been observed between estimates derived from satellites and estimates produced with the traditional Growing Degree Days (GDD) method based on thermal unit accumulation. Improved estimates of the maturity stage were obtained using a procedure that integrates satellite and GDD methods; however its application requires spatially distributed information on the cultivated varieties. Satellite derived maps of the retrieved phenological parameters showed an intra-seasonal pattern related to different cultivated varieties. Inter-seasonal analysis allowed the anomalous behaviour of the year 2003 to be highlighted, characterized by rapid growth at the beginning of the spring and an early senescence. The results confirm the potential of remotely sensed data for the monitoring of crop status and for the forcing of crop models in a spatially distributed way.

Advanced methods of plant disease detection. A review

Plant diseases are responsible for major economic losses in the agricultural industry worldwide. Monitoring plant health and detecting pathogen early are essential to reduce disease spread and facilitate effective management practices. DNA-based and serological methods now provide essential tools for accurate plant disease diagnosis, in addition to the traditional visual scouting for symptoms. Although DNA-based and serological methods have revolutionized plant disease detection, they are not very reliable at asymptomatic stage, especially in case of pathogen with systemic diffusion. They need at least 1–2 days for sample harvest, processing, and analysis. Here, we describe modern methods based on nucleic acid and protein analysis. Then, we review innovative approaches currently under development. Our main findings are the following: (1) novel sensors based on the analysis of host responses, e.g., differential mobility spectrometer and lateral flow devices, deliver instantaneous results and can effectively detect early infections directly in the field; (2) biosensors based on phage display and biophotonics can also detect instantaneously infections although they can be integrated with other systems; and (3) remote sensing techniques coupled with spectroscopy-based methods allow high spatialization of results, these techniques may be very useful as a rapid preliminary identification of primary infections. We explain how these tools will help plant disease management and complement serological and DNA-based methods. While serological and PCR-based methods are the most available and effective to confirm disease diagnosis, volatile and biophotonic sensors provide instantaneous results and may be used to identify infections at asymptomatic stages. Remote sensing technologies will be extremely helpful to greatly spatialize diagnostic results. These innovative techniques represent unprecedented tools to render agriculture more sustainable and safe, avoiding expensive use of pesticides in crop protection.

Comparative analysis of normalised difference spectral indices derived from MODIS for detecting surface water in flooded rice cropping systems

Identifying managed flooding in paddy fields is commonly used in remote sensing to detect rice. Such flooding, followed by rapid vegetation growth, is a reliable indicator to discriminate rice. Spectral indices (SIs) are often used to perform this task. However, little work has been done on determining which spectral combination in the form of Normalised Difference Spectral Indices (NDSIs) is most appropriate for surface water detection or which thresholds are most robust to separate water from other surfaces in operational contexts. To address this, we conducted analyses on satellite and field spectral data from an agronomic experiment as well as on real farming situations with different soil and plant conditions. Firstly, we review and select NDSIs proposed in the literature, including a new combination of visible and shortwave infrared bands. Secondly, we analyse spectroradiometric field data and satellite data to evaluate mixed pixel effects. Thirdly, we analyse MODIS data and Landsat data at four sites in Europe and Asia to assess NDSI performance in real-world conditions. Finally, we test the performance of the NDSIs on MODIS temporal profiles in the four sites. We also compared the NDSIs against a combined index previously used for agronomic flood detection. Analyses suggest that NDSIs using MODIS bands 4 and 7, 1 and 7, 4 and 6 or 1 and 6 perform best. A common threshold for each NDSI across all sites was more appropriate than locally adaptive thresholds. In general, NDSIs that use band 7 have a negligible increase in Commission Error over those that use band 6 but are more sensitive to water presence in mixed land cover conditions typical of moderate spatial resolution analyses. The best performing NDSI is comparable to the combined index but with less variability in performance across sites, suggesting a more succinct and robust flood detection method.

Nitrogen Status Assessment for Variable Rate Fertilization in Maize through Hyperspectral Imagery

This paper presents a method for mapping the nitrogen (N) status in a maize field using hyperspectral remote sensing imagery. An airborne survey was conducted with an AISA Eagle hyperspectral sensor over an experimental farm where maize (Zea mays L.) was grown with two N fertilization levels (0 and 100 kg N ha−1) in four replicates. Leaf and canopy field data were collected during the flight. The nitrogen (N) status has been estimated in this work based on the Nitrogen Nutrition Index (NNI), defined as the ratio between the leaf actual N concentration (%Na) of the crop and the minimum N content required for the maximum biomass production (critical N concentration (%Nc)) calculated through the dry mass at the time of the flight (Wflight). The inputs required to calculate the NNI (i.e., %Na and Wflight) have been estimated through regression analyses between field data and remotely sensed vegetation indices. MCARI/MTVI2 (Modified Chlorophyll Absorption Ratio Index/Modified Triangular Vegetation Index 2) showed the best performances in estimating the %Na (R2 = 0.59) and MTVI2 in estimating the Wflight (R2 = 0.80). The %Na and the Wflight were then mapped and used to compute the NNI map over the entire field. The NNI map agreed with the NNI estimated using field data through traditional destructive measurements (R2 = 0.70) confirming the potential of using remotely sensed indices to assess the crop N condition. Finally, a method to derive a pixel based variable rate N fertilization map was proposed as the difference between the actual N content and the optimal N content. We think that the proposed operational methodology is promising for precision farming since it represents an innovative attempt to derive a variable rate N fertilization map based on the actual crop N status from an aerial hyperspectral image.

Land-use and land-cover change detection in a semi-arid area of Niger using multi-temporal analysis of Landsat images

Recent studies using low-resolution satellite time series show that the Sahelian belt of West Africa is witnessing an increase in vegetation cover/biomass, called re-greening. However, detailed information on local processing and changes is rare or lacking. A multi-temporal set of Landsat images was used to produce land-cover maps for the years 2000 and 2007 in a semi-arid region of Niger, where an anomalous vegetation trend was previously detected. Several supervised classification approaches were tested: spectral classification of single Landsat data, temporal classification of normalized difference vegetation index time series from Landsat images, and two-step classification integrating both these approaches. The accuracy of the land-cover maps obtained ranges between 80% and 90% overall for the two-step classification approach. Comparison of the maps between the two years indicates a stable semi-arid region, where some change in hot spots exists despite a generally constant level of rainfall in the area during this period. In particular, the Dallol Bosso fossil valley highlights an increase in cultivated land, while a decrease in herbaceous vegetation was observed outside the valley where rangeland is the predominant natural landscape.

A flexible multi-source spatial-data fusion system for environmental status assessment at continental scale

The monitoring of the environments status at continental scale involves the integration of information derived by the analysis of multiple, complex, multidisciplinary, and large‐scale phenomena. Thus, there is a need to define synthetic Environmental Indicators (EIs) that concisely represent these phenomena in a manner suitable for decision‐making. This research proposes a flexible system to define EIs based on a soft fusion of contributing environmental factors derived from multi‐source spatial data (mainly Earth Observation data). The flexibility is twofold: the EI can be customized based on the available data, and the system is able to cope with a lack of expert knowledge. The proposal allows a soft quantifier‐guided fusion strategy to be defined, as specified by the user through a linguistic quantifier such as ‘most of’. The linguistic quantifiers are implemented as Ordered Weighted Averaging operators. The proposed approach is applied in a case study to demonstrate the periodical computation of anomaly indicators of the environmental status of Africa, based on a 7‐year time series of dekadal Earth Observation datasets. Different experiments have been carried out on the same data to demonstrate the flexibility and robustness of the proposed method.

Multitemporal Monitoring of Plant Area Index in the Valencia Rice District with PocketLAI

Leaf area index (LAI) is a key biophysical parameter used to determine foliage cover and crop growth in environmental studies in order to assess crop yield. Frequently, plant canopy analyzers (LAI-2000) and digital cameras for hemispherical photography (DHP) are used for indirect effective plant area index (PAIeff) estimates. Nevertheless, these instruments are expensive and have the disadvantages of low portability and maintenance. Recently, a smartphone app called PocketLAI was presented and tested for acquiring PAIeff measurements. It was used during an entire rice season for indirect PAIeff estimations and for deriving reference high-resolution PAIeff maps. Ground PAIeff values acquired with PocketLAI, LAI-2000, and DHP were well correlated (R2 = 0.95, RMSE = 0.21 m2/m2 for Licor-2000, and R2 = 0.94, RMSE = 0.6 m2/m2 for DHP). Complementary data such as phenology and leaf chlorophyll content were acquired to complement seasonal rice plant information provided by PAIeff. High-resolution PAIeff maps, which can be used for the validation of remote sensing products, have been derived using a global transfer function (TF) made of several measuring dates and their associated satellite radiances.

Analysis and Interpretation of Spectral Indices for Soft Multicriteria Burned-Area Mapping in Mediterranean Regions

Burned-area mapping algorithms developed for satellite images often rely on the use of spectral indices for discriminating between burns and other surfaces. The choice of the most suitable index is often a difficult task because each index brings a different type of information, as well as a rate of misclassification error. Moreover, the choice may be a function of the geographical area, spectral and geometrical characteristics of satellite data, and objectives of the study. In this letter, we compare the performance of different indices computed for Advanced Spaceborne Thermal Emission and Reflection Radiometer imagery and propose a methodology for integrating them into a synthetic indicator of likelihood of burn. The methodology is based on fuzzy set theory and aims to lay the foundation for the development of a burned-area mapping algorithm in the Mediterranean environment of southern Italy.

Exploitation of SAR and Optical Sentinel Data to Detect Rice Crop and Estimate Seasonal Dynamics of Leaf Area Index

This paper presents and evaluates multitemporal LAI estimates derived from Sentinel-2A data on rice cultivated area identified using time series of Sentinel-1A images over the main European rice districts for the 2016 crop season. This study combines the information conveyed by Sentinel-1A and Sentinel-2A into a high-resolution LAI retrieval chain. Rice crop was detected using an operational multi-temporal rule-based algorithm, and LAI estimates were obtained by inverting the PROSAIL radiative transfer model with Gaussian process regression. Direct validation was performed with in situ LAI measurements acquired in coordinated field campaigns in three countries (Italy, Spain and Greece). Results showed high consistency between estimates and ground measurements, revealing high correlations (R2 > 0.93) and good accuracies (RMSE < 0.83, rRMSEm < 23.6% and rRMSEr < 16.6%) in all cases. Sentinel-2A estimates were compared with Landsat-8 showing high spatial consistency between estimates over the three areas. The possibility to exploit seasonally-updated crop mask exploiting Sentinel-1A data and the temporal consistency between Sentinel-2A and Landsat-7/8 LAI time series demonstrates the feasibility of deriving operationally high spatial-temporal decametric multi-sensor LAI time series useful for crop monitoring.

Mapping Burned Areas in a Mediterranean Environment Using Soft Integration of Spectral Indices from High-Resolution Satellite Images

Abstract This article presents a new method for burned area mapping using high-resolution satellite images in the Mediterranean ecosystem. In such a complex environment, high-resolution satellite images represent an appropriate data source for identifying fire-affected areas, and single postfire data are often the only available source of information. The method proposed here integrates several spectral indices into a fuzzy synthetic indicator of likelihood of burn. The indices are interpreted through fuzzy membership functions that have been derived with a partially data-driven approach exploiting training data and expert knowledge. The final map of fire-affected areas is produced by applying a region growing algorithm on the basis of seed pixels selected on a conservative threshold of the synthetic fuzzy score. The algorithm has been developed and tested on a set of Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) scenes acquired over Southern Italy. Validation showed that the accu...