Mohammed Rasheed

Coral mucus functions as an energy carrier and particle trap in the reef ecosystem

Zooxanthellae, endosymbiotic algae of reef-building corals, substantially contribute to the high gross primary production of coral reefs, but corals exude up to half of the carbon assimilated by their zooxanthellae as mucus. Here we show that released coral mucus efficiently traps organic matter from the water column and rapidly carries energy and nutrients to the reef lagoon sediment, which acts as a biocatalytic mineralizing filter. In the Great Barrier Reef, the dominant genus of hard corals, Acropora, exudes up to 4.8 litres of mucus per square metre of reef area per day. Between 56% and 80% of this mucus dissolves in the reef water, which is filtered through the lagoon sands. Here, coral mucus is degraded at a turnover rate of at least 7% per hour. Detached undissolved mucus traps suspended particles, increasing its initial organic carbon and nitrogen content by three orders of magnitude within 2 h. Tidal currents concentrate these mucus aggregates into the lagoon, where they rapidly settle. Coral mucus provides light energy harvested by the zooxanthellae and trapped particles to the heterotrophic reef community, thereby establishing a recycling loop that supports benthic life, while reducing loss of energy and nutrients from the reef ecosystem.

Endoscopic exploration of Red Sea coral reefs reveals dense populations of cavity-dwelling sponges

Framework cavities are the largest but least explored coral reef habitat. Previous dive studies of caverns, spaces below plate corals, rubble and artificial cavities suggest that cavity-dwelling (coelobite) filter-feeders are important in the trophodynamics of reefs. Quantitative community data are lacking, however, as the bulk of the narrow crevices interlacing the reef framework are inaccessible to conventional analysis methods. Here we have developed endoscopic techniques to explore Red Sea framework crevices up to 4 m into the carbonate rock, revealing a large internal surface (2.5–7.4 m2 per projected m2 reef) dominated by encrusting filter-feeders. Sponges alone provided up to 60% of coelobite cover, outweighing epi-reefal filter-feeder biomass by two orders of magnitude. Coelobite community filtration removed more than 60% of the phytoplankton in the course of its less than 5-minute passage through the crevices, corresponding to an uptake of roughly 0.9 g carbon m-2 d-1. Mineralization of the largely allochthonous organic material is a principal source of nutrients supporting coral and algal growth. The supply of new material by coelobites may provide a key to understanding the ‘coral reef paradox’—a rich ecosystem thriving in nutrient-poor water.

Drivers of bacterial diversity dynamics in permeable carbonate and silicate coral reef sands from the Red Sea

Permeable sediments and associated microbial communities play a fundamental role in nutrient recycling within coral reef ecosystems by ensuring high levels of primary production in oligotrophic environments. A previous study on organic matter degradation within biogenic carbonate and terrigenous silicate reef sands in the Red Sea suggested that observed sand-specific differences in microbial activity could be caused by variations in microbial biomass and diversity. Here, we tested this hypothesis by comparing bacterial abundance and community structure in both sand types, and by further exploring the structuring effects of time (season) and space (sediment depth, in/out-reef). Changes in bacterial community structure, as determined via automated ribosomal intergenic spacer analysis (ARISA), were primarily driven by sand mineralogy at specific seasons, sediment depths and reef locations. By coupling ARISA with 16S-ITS rRNA sequencing, we detected significant community shifts already at the bacterial class level, with Proteobacteria (Gamma-, Delta-, Alpha-) and Actinobacteria being prominent members of the highly diverse communities. Overall, our findings suggest that reef sand-associated bacterial communities vary substantially with sand type. Especially in synergy with environmental variation over time and space, mineralogical differences seem to play a central role in maintaining high levels of bacterial community heterogeneity. The local co-occurrence of carbonate and silicate sands may thus significantly increase the availability of microbial niches within a single coral reef ecosystem.

Mineralization of particulate organic matter derived from coral-reef organisms in reef sediments of the Gulf of Aqaba

In situ and laboratory incubation experiments in a fringing reef in the Gulf of Aqaba were performed to study degradation rates of particulate organic matter in reef sediments. Coral mucus, clam eggs, and zooxanthellae were used as model particulate organic compounds for these experiments. Aerobic and anaerobic mineralization rates were calculated by dissolved inorganic carbon (DIC) and O2 fluxes from the sediments under different particulate organic matter additions. Fast enhancement (approximately twofold) of O2 and DIC fluxes were found with the addition of coral mucus and clam eggs compared with control incubations without addition. Most of the degradation is believed to have occurred anaerobically rather than aerobically (DIC:O2 ratios were 4.3–28.1). Higher degradation rates of coral mucus and clam eggs were estimated in carbonate sediment than in silicate sediment (1.2–1.6-fold), which was attributed to the different physical and chemical properties of both sediments. Our study shows the significance of the reef sediment as a suitable site for microbial degradation of particulate organic material excreted from different reef community organisms. This may increase the regeneration of nutrients in the reef environment necessary to sustain high biological productivity.

New nitrogenous compounds from a Red Sea sponge from the Gulf of Aqaba.

Abstract Chemical investigation of an unknown marine sponge, which was collected in the Gulf of Aqaba (Jordan), afforded a new brominated alkaloid 3-amino-1-(2-amino-4-bromophenyl)propan-1-one (1), as well as 7-bromoquinolin-4(1H)-one (2) which had previously only been reported as a synthetic compound. In addition, caulerpin (6), previously only known to be produced by algae, was likewise isolated. Furthermore, three known alkaloids including (Z)-5-(4-hydroxybenzylidene)-hydantoin, (Z)-6-bromo-3′-deimino-2′,4′-bis(demethyl)-3′-oxoaplysinopsin, and 6-bromoindole-3-carbaldehyde (3–5), were also obtained. All compounds were unambiguously elucidated based on extensive 1D and 2D NMR spectroscopy, LCMS, as well as by comparison with the literature and tested for their cytotoxic activity toward the mouse lymphoma cell line L5178Y.

Chemical evaluation of sand material sources for beach replenishment along the coast of the Gulf of Aqaba, Red Sea

Four potential borrow sites (sources of sand) for beach nourishment were selected at the Aqaba terraces and dredged offshore sand along the Jordanian coast of the Gulf of Aqaba, and at Al-Humaimah and Wadi Rum sand dunes north and northeast of Aqaba town. An elution test has been performed on the sand materials of these potential borrow sites to determine the levels of dissolved inorganic phosphorus and dissolved inorganic nitrogen that might be leached from the sand particles when they come into contact with seawater, and examine their suitability for beach replenishment works. The levels of total phosphorus, total nitrogen, organic matter and selected heavy metals were also measured in the sand materials after the elution test and compared with their levels in the same samples before elution and with their levels in the natural beach sand of the study area. The results of the tests show that the concentrations of the measured pollutants are low in the sand materials of the borrow sites, and the amounts of these pollutants that may reach the seawater of the Gulf of Aqaba, if quantities as large as 100,000 tons of the sand materials were used in beach nourishment projects, are very low when compared with their levels in seawater. The results of the tests, as well as organic matter and mud contents of the sand materials, indicate their suitability for use in beach nourishment. However, the Aqaba uplifted terraces would be the most suitable and the lowest cost source because they are common along the shores of the Gulf of Aqaba.

Potential environmental impact of dissolution of raw phosphate in sea water of the Gulf of Aqaba

Dissolution of raw phosphate (apatite) in sea water of the Gulf of Aqaba was investigated through lab incubation experiments. Three types from three different sources (Al-Hasa, Al-Abyad and Esh-Shydiya) have been used for these experiments. Impact of quantity, grain size, and source (type) of raw phosphate on dissolution rate were studied. Statistical analysis shows significant differences between the results obtained from comparing each two weights; as weight of apatite increased, dissolved inorganic phosphate-phosphorus (DIP) and fluoride in sea water solution increased. The differences between the dissolution rates of raw phosphate from the three sites were not significant while the differences between the different grain size fractions were significant. Dissolution rates were inversely related to particle size. Using a worst-case scenario, a conservative estimate of the maximum increase in DIP in seawater of the Gulf of Aqaba due to the apatite particles lost to the sea during ship loading resulted in DIP concentrations of 0.03 μM per year. As the residence time of the water in the Gulf of Aqaba is about one year, the DIP concentration will not increase by more than 0.03 μM under the estimated annual quantity of exported phosphate. Fluoride will not increase by more than 0.03 mg/l under the same conditions.

Impact of artificial lagoons on seawater quality: evidence from 7 years of physicochemical seawater monitoring

Seven years (2010–2016) of data on the basic physicochemical properties of seawater, temperature, salinity, dissolved oxygen (DO), nutrients, chlorophyll a (Chl a), and hydrocarbons from two lagoons were used to evaluate the impact of the anthropogenic activities inside the lagoon on the water quality and to explore the relationship of any impact from the lagoons’ design. Statistical analysis shows the modification in water quality inside the lagoon compared to the ambient seawater is particularly evident for nitrate, silicate, and Chl a. The modification is attributed to the extensive boat activities in the lagoons and the limited water exchange between the lagoons and ambient seawater. However, the impact to both lagoons is generally limited to inside the lagoons. The oligotrophic state of the two lagoons was evaluated and it was found that the most marked code violations were found in DIN inside both lagoons. In order to explore the design importance, the water exchange and overall water quality was compared between the two lagoons. This study highlights the importance of an environmental design study before the construction of any lagoon project. Proper design would maintain acceptable water quality inside the lagoons, critical for environmental health and supporting continued recreational activities.