Moonhee Kim

Creating Favorable Geometries for Directing Organic Photoreactions in Alkanethiolate Monolayers

Molecules align in molecular overlayers for photodimerization reactions that would be disfavored in solution. The products of photoreactions of conjugated organic molecules may be allowed by selection rules but not observed in solution reactions because of unfavorable reaction geometries. We have used defect sites in self-assembled alkanethiolate monolayers on gold surfaces to direct geometrically unfavorable photochemical reactions between individual organic molecules. High conductivity and stochastic switching of anthracene-terminated phenylethynylthiolates within alkanethiolate monolayers, as well as in situ photochemical transformations, have been observed and distinguished with the scanning tunneling microscope (STM). Ultraviolet light absorbed during imaging increases the apparent heights of excited molecules in STM images, a direct manifestation of probing electronically excited states.

Self-Assembly of Carboranethiol Isomers on Au{111}: Intermolecular Interactions Determined by Molecular Dipole Orientations

Self-assembled monolayer (SAM) structures and properties are dominated by two interactions: those between the substrate and adsorbate and those between the adsorbates themselves. We have fabricated self-assembled monolayers of m-1-carboranethiol (M1) and m-9-carboranethiol (M9) on Au[111]. The two isomers are nearly identical geometrically, but calculated molecular dipole moments show a sizable difference at 1.06 and 4.08 D for M1 and M9 in the gas phase, respectively. These molecules provide an opportunity to investigate the effect of different dipole moments within SAMs without altering the geometry of the assembly. Pure and co-deposited SAMs of these molecules were studied by scanning tunneling microscopy (STM). The molecules are indistinguishable in STM images, and the hexagonally close-packed adlayer structures were found to have ((square root of 19) x (square root of 19))R23.4 degrees unit cells. Both SAMs display rotational domains without the protruding or depressed features in STM images associated with domain boundaries in other SAM systems. Differing orientations of molecular dipole moments influence SAM properties, including the stability of the SAM and the coverage of the carboranethiolate in competitive binding conditions. These properties were investigated by dynamic contact angle goniometry, Kelvin probe force microscopy, and grazing incidence Fourier transform infrared spectroscopy.

Directing Substrate Morphology via Self-Assembly: Ligand-Mediated Scission of Gallium–Indium Microspheres to the Nanoscale

We have developed a facile method for the construction of liquid-phase eutectic gallium-indium (EGaIn) alloy nanoparticles. Particle formation is directed by molecular self-assembly and assisted by sonication. As the bulk liquid alloy is ultrasonically dispersed, fast thiolate self-assembly at the EGaIn interface protects the material against oxidation. The choice of self-assembled monolayer ligand directs the ultimate size reduction in the material; strongly interacting molecules induce surface strain and assist particle cleavage to the nanoscale. Transmission electron microscopy images and diffraction analyses reveal that the nanoscale particles are in an amorphous or liquid phase, with no observed faceting. The particles exhibit strong absorption in the ultraviolet (∼200 nm), consistent with the gallium surface plasmon resonance, but dependent on the nature of the particle ligand shell.

Photoresponsive Molecules in Well‐Defined Nanoscale Environments

Stimuli-responsive molecules are key building blocks of functional molecular materials and devices. These molecules can operate in a range of environments. A molecules local environment will dictate its conformation, reactivity, and function; by controlling the local environment we can ultimately develop interfaces of individual molecules with the macroscopic environment. By isolating molecules in well-defined environments, we are able to obtain both accurate measurements and precise control. We exploit defect sites in self-assembled monolayers (SAMs) to direct the functional molecules into precise locations, providing a basis for the measurements and engineering of functional molecular systems. The structure and functional moieties of the SAM can be tuned to control not only the intermolecular interactions but also molecule-substrate interactions, resulting in extraction or control of desired molecular functions. Herein, we report our progress toward the assembly and measurements of photoresponsive molecules and their precise assemblies in SAM matrices.

Self-Assembled Monolayers of 2-Adamantanethiol on Au{111} : Control of Structure and Displacement

We have investigated the formation of 2-adamantanethiolate self-assembled monolayers on Au{111} and their displacement by n-dodecanethiol, using scanning tunneling microscopy, X-ray photoelectron spectroscopy, and infrared reflection absorption spectroscopy. Well-ordered 2-adamantanethiolate monolayers undergo rapid and significant molecular exchange upon exposure to n-dodecanethiol solutions, but their structures and intermolecular interactions template the growth of n-dodecanethiolate domains. Annealing 2-adamantanethiolate monolayers at 78 degrees C decreases the density of vacancy islands, while increasing the overall order and the average domain sizes in the films. This results in slower displacement by n-dodecanethiol molecules, as compared to unannealed monolayers. The secondary sulfur position on the adamantyl cage influences the lattice structure and exchange of 2-adamantanethiolate monolayers by alkanethiols.

Exchange Reactions between Alkanethiolates and Alkaneselenols on Au{111}

When alkanethiolate self-assembled monolayers on Au{111} are exchanged with alkaneselenols from solution, replacement of thiolates by selenols is rapid and complete, and is well described by perimeter-dependent island growth kinetics. The monolayer structures change as selenolate coverage increases, from being epitaxial and consistent with the initial thiolate structure to being characteristic of selenolate monolayer structures. At room temperature and at positive sample bias in scanning tunneling microscopy, the selenolate-gold attachment is labile, and molecules exchange positions with neighboring thiolates. The scanning tunneling microscope probe can be used to induce these place-exchange reactions.

Dynamic Double Lattice of 1-Adamantaneselenolate Self-Assembled Monolayers on Au{111}

We report a complex, dynamic double lattice for 1-adamantaneselenolate monolayers on Au{111}. Two lattices coexist, revealing two different binding modes for selenols on gold: molecules at bridge sites have lower conductance than molecules at three-fold hollow sites. The monolayer is dynamic, with molecules switching reversibly between the two site-dependent conductance states. Monolayer dynamics enable adsorbed molecules to reorganize according to the underlying gold electronic structure over long distances, which facilitates emergence of the self-organized rows of dimers. The low-conductance molecules assume a (7 × 7) all-bridge configuration, similar to the analogous 1-adamantanethiolate monolayers on Au{111}. The high-conductance molecules self-organize upon mild annealing into distinctive rows of dimers with long-range order, described by a (6√5 × 6√5)R15° unit cell.

Simple, robust molecular self-assembly on germanium

We report the facile fabrication of high-quality, robust alkanethiolate self-assembled monolayers (SAMs) on germanium substrates. Our approach to produce SAMs on technologically important substrates takes advantage of the many strategies previously developed for gold-thiol self-assembly. Direct self-assembly of alkanethiols on germanium is impeded by the presence of the native germanium oxide. Using a mixture of water and ethanol, we create an environment where both adsorbate and oxide are sufficiently soluble to enable SAM deposition in a single step. By manipulating reaction conditions, monolayers form spontaneously on untreated germanium, which opens new avenues for the exploitation of self-assembly on semiconductor surfaces. While our analyses initially focused on 1-dodecanethiol on Ge(100), this method is robust and we have extended its use to include a range of adsorbates on Ge(100) as well as to the Ge(111) and Ge(110) substrates.

High-fidelity chemical patterning on oxide-free germanium.

Oxide-free germanium can be chemically patterned directly with self-assembled monolayers of n-alkanethiols via submerged microcontact printing. Native germanium dioxide is water soluble; immersion activates the germanium surface for self-assembly by stripping the oxide. Water additionally provides an effective diffusion barrier that prevents undesired ink transport. Patterns are stable with respect to molecular exchange by carboxyl-functionalized thiols.