Mosun E. Ogedengbe

Molecular phylogenetics of eimeriid coccidia (Eimeriidae, Eimeriorina, Apicomplexa, Alveolata): A preliminary multi-gene and multi-genome approach

Coccidia possess three distinct genomes: nuclear, mitochondrial, and plastid. Sequences from five genes located on these three genomes were used to reconstruct the phylogenetic relationships of members of the phylum Apicomplexa: 18S rDNA sequences from the nuclear (nu) genome, partial cytochrome c oxidase subunit I sequences from the mitochondrial (mt) genome, and partial 16S and 23S rDNA sequences and RNA polymerase B sequences from plastid (pl) genomes. Maximum parsimony, maximum likelihood, and Bayesian inference were used in conjunction with nuclear substitution models generated from data subsets in the analyses. Major groups within the Apicomplexa were well supported with the mitochondrial, nuclear, and a combination of mitochondrial, nuclear and concatenated plastid gene sequences. However, the genus Eimeria was paraphyletic in phylogenetic trees based on the nuclear gene. Analyses using the individual genes (18S rDNA and cytochrome c oxidase subunit I) resolved the various apicomplexan groups with high Bayesian posterior probabilities. The multi-gene, multi-genome analyses based on concatenated nu 18S rDNA, pl 16S, pl 23S, pl rPoB, pl rPoB1, and mt COI sequences appeared useful in resolving phylogenetic relationships within the phylum Apicomplexa. Genus-level relationships, or higher, appear best supported by 18S rDNA analyses, and species-level analyses are best investigated using mt COI sequences; for parasites for which both loci are available, nuclear 18S rDNA sequences combined with mitochondrial COI sequences provide a compact and informative molecular dataset for inferring the evolutionary relationships taxa in the Apicomplexa.

The complete mitochondrial genome sequence of an Isospora sp. (Eimeriidae, Eucoccidiorida, Coccidiasina, Apicomplexa) causing systemic coccidiosis in domestic Canaries (Serinus canaria Linn.)

Abstract We report a complete mitochondrial genome sequence for an Isospora sp. causing systemic coccidiosis in canaries, Serinus canaria. The A + T rich (65.2%) genome was 6216 bp in length and possessed 3 protein-coding genes, (COI; COIII and CytB), 19 LSU and 14 SSU rDNA fragments, including 1 newly identified putative LSU fragment. Arrangement of coding regions was identical to that of available Eimeria sp. mt genomes and start codon usage for protein-coding genes was conventional. The similar mitochondrial genome sequences and structures of Isospora and Eimeria species confirm the close relationship between these eimeriid genera of apicomplexan parasites.

Biological re-description of a genetically typed, single oocyst line of the turkey coccidium, Eimeria meleagrimitis Tyzzer 1929

For the purpose of re-describing the Eimeria species that infect the turkey (Meleagris gallopavo) and to establish benchmark biological information linked to genetic markers for each species, a strain of Eimeria meleagrimitis Tyzzer 1929 was obtained from a litter sample from a turkey farm in Minnesota, USA in 2008. Multiple pure lines were derived by infecting turkey poults with a single oocyst; one of these lines was then used to re-describe biological and morphological features of E. meleagrimitis in the turkey and to designate a neotype of E. meleagrimitis in the turkey. Oocyst morphometrics of this line matched those of this species as originally described by Tyzzer (Am J Hyg 10:269–383, 1929). Three asexual generations of merogony (the first generation of meronts large in size and the second and third generations small) were detected in the intestines before the onset of gametogony; no developmental stages were detected in the cecal pouches. No mortality was induced by this line of E. meleagrimitis even when turkey poults were infected with high doses of oocysts (up to 5 × 105 oocysts/bird) and despite the ability of E. meleagrimitis to induce severe mucosal damage in the upper and middle duodenum. Macroscopic lesions were characterized to provide a graded lesion scoring guide that should assist assessment of the severity of infections with this species in infected turkeys. The pathogenicity of the strain was investigated, and a significant reduction in weight gain and feed conversion ratio was observed with doses of 104 oocysts/bird or more. The maximum yield of oocysts in the feces was obtained when birds were inoculated with 5 × 103 oocysts.

The complete mitochondrial genome of Caryospora bigenetica (Eimeriidae, Eucoccidiorida, Coccidiasina, Apicomplexa)

Abstract The 6313 bp complete mitochondrial (mt) genome of Caryospora bigenetica was sequenced directly from PCR products. The mt genome was comparable in size, gene content and order to those of other Eimeriid coccidia (e.g. Isospora or Eimeria species). Three protein-coding genes encoding COI, COIII and CytB were identified; numerous rDNA fragments (19 LSU and 14 SSU) were interspersed among the CDS. Nucleotide composition was A + T biased (66%). The mitochondrial genomes of Eimeriid coccidia appear to share the same gene order and content; mt genome sequences can provide molecular data useful for diagnostics, taxonomy and phylogenetic relationships of Eimeriid coccidia.