Muhammad Faizan Shirazi

In Vivo Monitoring on Growth and Spread of Gray Leaf Spot Disease in Capsicum annuum Leaf Using Spectral Domain Optical Coherence Tomography

We have demonstrated the application of optical coherence tomography (OCT) in diagnosis of growth and spread of the gray leaf spot disease in Capsicum annuum leaf caused by the fungus Stemphylium lycopersici. Using 2D cross-sectional and 3D volumetric images of OCT, in vivo study of layer differences between fungus infected leaves and healthy leaves was observed with distinctive features. We observed that the internal layers of the disease-affected parts of the leaf seem to merge forming a single thick layer. The obtained OCT results verify the noninvasive diagnosis ability of fungal growth and spread in Capsicum annuum leaves and the applicability of this methodology for other plant diseases.

Fast Industrial Inspection of Optical Thin Film Using Optical Coherence Tomography

An application of spectral domain optical coherence tomography (SD-OCT) was demonstrated for a fast industrial inspection of an optical thin film panel. An optical thin film sample similar to a liquid crystal display (LCD) panel was examined. Two identical SD-OCT systems were utilized for parallel scanning of a complete sample in half time. Dual OCT inspection heads were utilized for transverse (fast) scanning, while a stable linear motorized translational stage was used for lateral (slow) scanning. The cross-sectional and volumetric images of an optical thin film sample were acquired to detect the defects in glass and other layers that are difficult to observe using visual inspection methods. The rapid inspection enabled by this setup led to the early detection of product defects on the manufacturing line, resulting in a significant improvement in the quality assurance of industrial products.

Depth enhancement in spectral domain optical coherence tomography using bidirectional imaging modality with a single spectrometer

Abstract. A method for depth enhancement is presented using a bidirectional imaging modality for spectral domain optical coherence tomography (SD-OCT). Two precisely aligned sample arms along with two reference arms were utilized in the optical configuration to scan the samples. Using exemplary images of the optical resolution target, Scotch tape, a silicon sheet with two needles, and a leaf, we demonstrated how the developed bidirectional SD-OCT imaging method increases the ability to characterize depth-enhanced images. The results of the developed system were validated by comparing the images with the standard OCT configuration (single-sample arm setup). Given the advantages of higher resolution and the ability to visualize deep morphological structures, this method can be utilized to increase the depth dependent fall-off in samples with limited thickness. Thus, the proposed bidirectional imaging modality is apt for cross-sectional imaging of entire samples, which has the potential capability to improve the diagnostic ability.

Lateral resolution enhancement using programmable phase modulator in optical coherence tomography

Adaptive optics plays an important role in the correction of high-order aberrations to enhance lateral resolution. An OCT system coupled with a programmable phase modulator is designed to verify lateral resolution improvement. The Hamamatsu high-resolution, non-pixelized, optically addressed light modulator (PAL-SLM) PPM X7550 series is used to correct aberrations, utilizing a simple method based on phase information from OCT images. The advantages of this method are its high simplicity and low cost. A raster scanning technique is adopted to scan samples covered with scattering suspension. Metal lines covered with scattering suspension are imaged, and a respective correction is applied to remove the aberration. Results demonstrate an improvement in lateral resolution on metal grid samples.

Full-Field Optical Coherence Tomography Using Galvo Filter-Based Wavelength Swept Laser

We report a wavelength swept laser-based full-field optical coherence tomography for measuring the surfaces and thicknesses of refractive and reflective samples. The system consists of a galvo filter–based wavelength swept laser and a simple Michelson interferometer. Combinations of the reflective and refractive samples are used to demonstrate the performance of the system. By synchronizing the camera with the source, the cross-sectional information of the samples can be seen after each sweep of the swept source. This system can be effective for the thickness measurement of optical thin films as well as for the depth investigation of samples in industrial applications. A resolution target with a glass cover slip and a step height standard target are imaged, showing the cross-sectional and topographical information of the samples.

Structural Analysis of Polymer Composites Using Spectral Domain Optical Coherence Tomography

The structural analysis of nylon/graphene oxide (NY/GO) and polyetherblockamide/ trisilinolphenyl-polyhederal oligomeric silsesquioxane (PEBA/t-POSS) composites were performed using high-resolution spectral domain optical coherence tomography (SD-OCT). This optical technology revealed both cross-sectional, as well as sub-layer depth information of sample. The non-destructive real-time imaging demonstrated the nature of defects in the composites. The thickness and location of each defect point in the composites were measured using A-scan analysis on the SD-OCT images. The cross-sectional and volumetric images clearly demonstrate the effectiveness of SD-OCT for composite research, as well as the for industrial quality assurance of polymer materials.

PSO with Gompertz increasing inertia weight

This paper implements Standard Particle Swarm Optimization (PSO) and a new algorithm that aims to be better than the classical PSO. An m-file code is used to simulate the Standard Particle Swarm Optimization and it is evaluated using the five well known benchmark functions namely Sphere, Ackley, Rastrigin, Rosenbrock, and Shcwefels Problem 2.26. A new PSO algorithm known as Gompertz increasing inertia weight (GIIW) is proposed and also implemented as above. The comparison has been simulated with standard PSO. From experiments, it shows that PSO with GIIW gives good performance with quick convergence capability and aggressive movement narrowing towards the solution region.

Swept source optical coherence tomography for in vivo growth monitoring of Capsicum annuum seeds treated with different NaCl concentrations

In this study, Optical coherence tomography (OCT) is demonstrated as a plausible optical tool for in vivo detection of plant seeds and its morphological changes during growth. The experiment was carried out on Capsicum annuum seeds that were treated with different molar concentrations of NaCl to investigate the most optimal concentration for the seed growth. The monitoring process was carried out for 9 consecutive days. The in vivo 2D OCT images of the treated seeds were obtained and compared with seeds that were grown with sterile distilled water. The obtained results confirm the feasibility of using OCT for the proposed application. Normalized A-scan analysis method is utilized for supporting the concluded results.

In Vivo Non-Destructive Monitoring of Capsicum Annuum Seed Growth with Diverse NaCl Concentrations Using Optical Detection Technique

We demonstrate that optical coherence tomography (OCT) is a plausible optical tool for in vivo detection of plant seeds and its morphological changes during growth. To investigate the direct impact of salt stress on seed germination, the experiment was conducted using Capsicum annuum seeds that were treated with different molar concentrations of NaCl. To determine the optimal concentration for the seed growth, the seeds were monitored for nine consecutive days. In vivo two-dimensional OCT images of the treated seeds were obtained and compared with the images of seeds that were grown using sterile distilled water. The obtained results confirm the feasibility of using OCT for the proposed application. Normalized depth profile analysis was utilized to support the conclusions.

Non-Destructive Classification of Diversely Stained Capsicum annuum Seed Specimens of Different Cultivars Using Near-Infrared Imaging Based Optical Intensity Detection

The non-destructive classification of plant materials using optical inspection techniques has been gaining much recent attention in the field of agriculture research. Among them, a near-infrared (NIR) imaging method called optical coherence tomography (OCT) has become a well-known agricultural inspection tool since the last decade. Here we investigated the non-destructive identification capability of OCT to classify diversely stained (with various staining agents) Capsicum annuum seed specimens of different cultivars. A swept source (SS-OCT) system with a spectral band of 1310 nm was used to image unstained control C. annuum seeds along with diversely stained Capsicum seeds, belonging to different cultivar varieties, such as C. annuum cv. PR Ppareum, C. annuum cv. PR Yeol, and C. annuum cv. Asia Jeombo. The obtained cross-sectional images were further analyzed for the changes in the intensity of back-scattered light (resulting due to dye pigment material and internal morphological variations) using a depth scan profiling technique to identify the difference among each seed category. The graphically acquired depth scan profiling results revealed that the control specimens exhibit less back-scattered light intensity in depth scan profiles when compared to the stained seed specimens. Furthermore, a significant back-scattered light intensity difference among each different cultivar group can be identified as well. Thus, the potential capability of OCT based depth scan profiling technique for non-destructive classification of diversely stained C. annum seed specimens of different cultivars can be sufficiently confirmed through the proposed scheme. Hence, when compared to conventional seed sorting techniques, OCT can offer multipurpose advantages by performing sorting of seeds in respective to the dye staining and provides internal structural images non-destructively.