Munetomo Nedachi

Tropical laterites, life on land, and the history of atmospheric oxygen in the Paleoproterozoic

The ca. 2.2 Ga Hekpoort paleosol of the Transvaal Supergroup in southern Africa has been considered a type example and the youngest iron-depleted paleosol formed under a reducing atmosphere in the early Precambrian. However, the mineralogical and geochemical data on recently acquired deep drill core intersections indicate that the Hekpoort paleosol represents part of an ancient lateritic weathering profile with an iron-depleted pallid lower zone and an iron-enriched lateritic upper zone. Previous studies of the paleosol took place in areas where only the lower pallid zone was preserved from erosion prior to deposition of cover beds. The laterite profile is comparable to that of modern tropical laterites formed under an oxic atmosphere in the presence of abundant terrestrial biomass. Revised stratigraphic correlation indicates that the Hekpoort laterite profile is a correlative to highly ferruginous laterite profiles of Wolhaarkop in Griqualand West. This information indicates that the oxygen-evolution curve, based on loss or retention of iron in paleosols, should be reexamined.

Deep-sea record of impact apparently unrelated to mass extinction in the Late Triassic

The 34-million-year (My) interval of the Late Triassic is marked by the formation of several large impact structures on Earth. Late Triassic impact events have been considered a factor in biotic extinction events in the Late Triassic (e.g., end-Triassic extinction event), but this scenario remains controversial because of a lack of stratigraphic records of ejecta deposits. Here, we report evidence for an impact event (platinum group elements anomaly with nickel-rich magnetite and microspherules) from the middle Norian (Upper Triassic) deep-sea sediment in Japan. This includes anomalously high abundances of iridium, up to 41.5 parts per billion (ppb), in the ejecta deposit, which suggests that the iridium-enriched ejecta layers of the Late Triassic may be found on a global scale. The ejecta deposit is constrained by microfossils that suggest correlation with the 215.5-Mya, 100-km-wide Manicouagan impact crater in Canada. Our analysis of radiolarians shows no evidence of a mass extinction event across the impact event horizon, and no contemporaneous faunal turnover is seen in other marine planktons. However, such an event has been reported among marine faunas and terrestrial tetrapods and floras in North America. We, therefore, suggest that the Manicouagan impact triggered the extinction of terrestrial and marine organisms near the impact site but not within the pelagic marine realm.

Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum.

An aerobic, methane-oxidizing bacterium (strain S8(T)) was isolated from marine sediments in Kagoshima Bay, Japan. Phylogenetic analysis based on 16S rRNA gene sequences indicated that this strain is closely related to members of the genus Methylocaldum (97.6-97.9 % similarity) within the class Gammaproteobacteria. Strain S8(T) was a Gram-staining-negative, non-motile, coccoid or short rod-shaped organism. The temperature range for growth of strain S8(T) was 20-47 °C (optimum growth at 36 °C). It required NaCl (>0.5 %), tolerated up to 5 % NaCl and utilized methane and methanol. The major cellular fatty acid and major respiratory quinone were C16 : 0 and 18-methylene ubiquinone 8, respectively. The DNA G+C content was 59.7 mol%. Strain S8(T) possessed mmoX, which encodes soluble methane monooxygenase, as well as pmoA, which encodes the particulate methane monooxygenase. On the basis of this morphological, physiological, biochemical and genetic information, the first marine species in the genus Methylocaldum is proposed, with the name Methylocaldum marinum sp. nov. The type strain is S8(T) ( = NBRC 109686(T) = DSM 27392(T)). An emended description of the genus Methylocaldum is also provided.

Sulphur sources for chemoautotrophic nutrition of shallow water vestimentiferan tubeworms in Kagoshima Bay

To elucidate the sulphur sources for chemoautotrophy by the symbiotic bacteria of a vestimentiferan tubeworm, Lamellibrachia satsuma , living in Kagoshima Bay at depths of 80–100 m, we analysed the sulphur isotopic ratios of the animal tissues and compared them with environmental sulphur species collected in the field. Animals that had been maintained in an aquarium for over a year and supplied a known sulphur source were also investigated. The gas emitted from volcanic source in Kagoshima Bay contained rather heavy sulphide (+12·7 to +22·9‰ δ 34 S) compared with deep-sea hydrothermal vent systems (0 to +5‰). The tissue of the tubeworms contained very light sulphide (−21·5 to −25·9‰). It is inferred from the analysis of the aquarium-maintained specimens that the fractionation by the tubeworm or its symbiont was

Ti-rich hydroandradites from the Sanbagawa metamorphic rocks of the Shibukawa area, central Japan

Ti-rich hydroandradite often occurs, though usually as a minor constituent, in serpentinized ultramafic rocks and associated gabbroic rocks of the Sanbagawa metamorphic belt. The chemistry of the host rocks is commonly characterized by undersaturation with SiO2.Two Ti-rich hydroandradites from metasomatized gabbroic rocks of the Shibukawa area have been chemically analysed by the wet method. Mössbauer experiments indicate the presence of Fe3+ and Fe2+ in the octahedral sites of these Ti-rich hydroandradites. Wet chemical analyses for total reducing capacity of the present garnets by two different methods together with Mössbauer data imply the presence of octahedral Ti3+ in their structure. Ti-rich hydroandratites, apart from their hydrous property, have a similar crystal chemistry to natural Ti-rich andradites.Ti-rich hydroandradites were probably formed in rocks with unusual chemical compositions within a P-T region of 300–400° C and 4–7 kb under limited conditions of relatively low oxygen fugacity and low μCO2.

Tepidicaulis marinus gen. nov., sp. nov., a marine bacterium that reduces nitrate to nitrous oxide under strictly microaerobic conditions

A moderately thermophilic, aerobic, stalked bacterium (strain MA2T) was isolated from marine sediments in Kagoshima Bay, Japan. Phylogenetic analysis of 16S rRNA gene sequences indicated that strain MA2T was most closely related to the genera Rhodobium,Parvibaculum, and Rhodoligotrophos (92-93 % similarity) within the class Alphaproteobacteria. Strain MA2T was a Gram-stain-negative and stalked dimorphic bacteria. The temperature range for growth was 16-48 °C (optimum growth at 42 °C). This strain required yeast extract and NaCl (>1 %, w/v) for growth, tolerated up to 11 % (w/v) NaCl, and was capable of utilizing various carbon sources. The major cellular fatty acid and major respiratory quinone were C18 : 1ω7c and ubiquinone-10, respectively. The DNA G+C content was 60.7 mol%. Strain MA2T performed denitrification and produced N2O from nitrate under strictly microaerobic conditions. Strain MA2T possessed periplasmic nitrate reductase (Nap) genes but not membrane-bound nitrate reductase (Nar) genes. On the basis of this morphological, physiological, biochemical and genetic information a novel genus and species, Tepidicaulis marinus gen. nov., sp. nov., are proposed, with MA2T ( = NBRC 109643T = DSM 27167T) as the type strain of the species.

Information and communication technology infrastructure and management for collaboration with regional universities and colleges

Information and Communication Technology (ICT) infrastructure for collaboration with regional universities and colleges, and management are discussed. The infrastructure consisted of Moodle servers at each institution, Moodle Lite, backup servers, test servers, a Video On Demand (VOD) server, a video meeting system, and other supporting systems. ICT infrastructure was designed and managed by a committee in charge of the collaboration. Members of the committee consisted of fifteen faculty members from each institution in the collaboration. Five technical support staff members were employed for managing the infrastructure.