Mysore V. Tejesvi

Root endophytes along a primary succession gradient in northern Finland

Primary successional vegetation gradients are characterized by changes in the soil microbial communities. However, information on possible shifts of the root endophytes along these gradients is scarce. The objective of the current study was to identify root endophytic fungi from a primary successional gradient on land uplift seashore of a geographically isolated island area. We applied a sequencing approach by amplifying the ITS region with fungal specific primers. We used mainly an isolate-based method, and to compare the abundance of culturable and unculturable endophytes, direct sequencing of one representative plant specimen Deschampsia flexuosa was also carried out. A total of 38 cultured endophytic strains were sequenced from Empetrum nigrum (Empetraceae), Vaccinium vitis-idaea (Ericaceae) and Deschampsia flexuosa (Poaceae). Out of these, 27 were identified as Phialocephala fortinii, three as Mollisia minutella, four as Phialophora sp., one as Ascomycetes sp. and three remained unidentified. The strains clustered into five clades in the phylogram, mostly irrespective of the successional stages and hosts from which they had been isolated. The early successional seashore dune ridge plants however, seemed to host a distinct fungal taxon, Phialophora sp. Culture-independent methods were applied on a root sample of a mid-successional Deschampsia flexuosa specimen and a total of 16 clones were randomly selected and sequenced. Out of 16 sequences, 13 were identified as unculturable strains and three showed closest similarity to a basidiomycete Cortinarius callisteus. The unculturable sequences were grouped into two main clades and were different from any culturable isolate in this study. Our results suggest that (i) P. fortinii dominates the isolate data at mid to late successional stages, (ii) roots of the ericaceous plants and the grass Deschampsia flexuosa are colonized by the same endophytic fungi in this ecosystem, and (iii) unculturable endophytes are common and potentially more abundant than the culturables. To our knowledge, this is the first report of the molecular phylogenies of the DSE in the mid-boreal zone and also the first report of the unculturable root endophytes of D. flexuosa.

Bioactivity and genetic diversity of endophytic fungi in Rhododendron tomentosum Harmaja

Eighty-seven endophytic fungi were isolated from asymptomatic leaf tissues of Rhododendron tomentosum. Most of the isolates were non-sporulating and therefore difficult to identify exclusively based on morphological characters. Eighteen isolates that were morphologically distinct were selected for identification by sequencing the ITS region. For culture-independent analysis, the DNA was isolated from the surface-sterilized leaves of R. tomentosum and the ITS region was amplified using fungal specific primers ITS1F and ITS4, cloned, and 11 clones were randomly selected and sequenced. The phylogenetic analysis was performed with MEGA4 on a total of 49 sequences, including 18 endophytic isolates and 11 unculturables obtained in this study, and 20 sequences from Genbank, which were distributed in four clusters. The culturable and unculturable endophytes formed separate clades and were clearly distinguishable with no overlap within the groups. Endophytic fungi are a well-recognized source of bioactive compounds and therefore antibacterial and antioxidant activities of the isolates of R. tomentosum were studied. All isolates were grown in two different media, enriched (MEB) and depleted (DM), and screened for antibacterial and antioxidant activities. As a result, 10% produced antibacterials and 14% antioxidants, in total 24% of the isolates had biological activity. Antioxidant broth of TRT59 was partially purified using HPLC. The majority of antibacterial compounds were produced in DM media and antioxidants in MEB media. Therefore, it is advisable to test various media for production of antibacterials and antioxidants.

Targeting high-performance liquid chromatography–high-resolution mass spectrometry–solid-phase extraction–nuclear magnetic resonance analysis with high-resolution radical scavenging profiles—Bioactive secondary metabolites from the endophytic fungus Penicillium namyslowskii

The high-resolution radical scavenging profile of an extract of the endophytic fungus Penicillium namyslowskii was used to target analysis by high-performance liquid chromatography-high-resolution mass spectrometry-solid-phase extraction-nuclear magnetic resonance spectroscopy, i.e., HPLC-HRMS-SPE-NMR, for identification of anti-oxidative secondary metabolites. This revealed the two chromatographic peaks with the highest relative response in the radical scavenging profile to be griseophenone C and peniprequinolone. The HPLC-HRMS-SPE-NMR analysis was performed in the tube-transfer mode using a cryogenically cooled NMR probe designed for 1.7mm NMR tubes. To further explore the potential of the above HPLC-HRMS-SPE-NMR platform for analysis of endophytic extracts, six peaks displaying no radical scavenging activity were also analyzed. This allowed unambiguous identification of six metabolites, i.e., dechlorogriseofulvin, dechlorodehydrogriseofulvin, griseofulvin, dehydrogriseofulvin, mevastatin acid, and mevastatin. The high mass sensitivity of the 1.7mm cryogenically cooled NMR probe allowed for the first time acquisition of direct detected (13)C NMR spectra of fungal metabolites, i.e., dechlorogriseofulvin and griseofulvin, directly from crude extract via HPLC-HRMS-SPE-NMR. Dechlorodehydrogriseofulvin was reported for the first time from nature.

Endophytic bacteria in plant tissue culture: differences between easy- and difficult-to-propagate Prunus avium genotypes.

The endophytic bacterial communities of six Prunus avium L. genotypes differing in their growth patterns during in vitro propagation were identified by culture-dependent and culture-independent methods. Five morphologically distinct isolates from tissue culture material were identified by 16S rDNA sequence analysis. To detect and analyze the uncultivable fraction of endophytic bacteria, a clone library was established from the amplified 16S rDNA of total plant extract. Bacterial diversity within the clone libraries was analyzed by amplified ribosomal rDNA restriction analysis and by sequencing a clone for each identified operational taxonomic unit. The most abundant bacterial group was Mycobacterium sp., which was identified in the clone libraries of all analyzed Prunus genotypes. Other dominant bacterial genera identified in the easy-to-propagate genotypes were Rhodopseudomonas sp. and Microbacterium sp. Thus, the community structures in the easy- and difficult-to-propagate cherry genotypes differed significantly. The bacterial genera, which were previously reported to have plant growth-promoting effects, were detected only in genotypes with high propagation success, indicating a possible positive impact of these bacteria on in vitro propagation of P. avium, which was proven in an inoculation experiment.

Production of Unusual Dispiro Metabolites in Pestalotiopsis virgatula Endophyte Cultures: HPLC-SPE-NMR, Electronic Circular Dichroism, and Time-Dependent Density-Functional Computation Study

The endophytic fungus Pestalotiopsis virgatula, derived from the plant Terminalia chebula and previously found to produce a large excess of a single metabolite when grown in the minimal M1D medium, was induced to produce a variety of unusual metabolites by growing in potato dextrose broth medium. Analysis of the fermentation medium extract was performed using an HPLC-PDA-MS-SPE-NMR hyphenated system, which led to the identification of a total of eight metabolites (1-8), six of which are new. Most of the metabolites are structurally related and are derivatives of benzo[c]oxepin, rare among natural products. This includes dispiro derivatives 7 and 8 (pestalospiranes A and B), having a novel 1,9,11,18-tetraoxadispiro[6.2.6.2]octadecane skeleton. Relative and absolute configurations of the latter were determined by a combination of NOESY spectroscopy and electronic circular dichroism spectroscopy supported by time-dependent density-functional theory calculations (B3LYP/TZVP level). This work demonstrates that a largely complete structure elucidation of numerous metabolites present in a raw fermentation medium extract can be performed by the HPLC-SPE-NMR technique using only a small amount of the extract, even with unstable metabolites that are difficult to isolate by traditional methods.

The siderophore ferricrocin produced by specific foliar endophytic fungi in vitro.

Production of extracellular siderophores is typical for many plant-associated microbes, both mutualistic and antagonistic. Various strains of mycorrhizal fungi produce siderophores, and siderophore production by pathogenic fungi is typically associated with virulence. We analyzed extracellular siderophore production along with production of antibacterial and antioxidant compounds in foliar endophytic fungi of Scots pine (Pinus sylvestris L.) and Labrador tea (Rhododendron tomentosum Harmaja). The siderophore produced in vitro was ferricrocin, quantities ranging between 7.9 and 17.6 μg/l. Only the fungi with antibacterial activity produced ferricrocin and any well-known siderophores were not detected in the broths of antioxidant-producing fungi. Therefore, production of ferricrocin is typical for some, but not all foliar endophytic fungi. Ferricrocin was detected in the leaves of Labrador tea, which suggests that ferricrocin may play a role in vivo in the interaction between the endophyte and plant host.

HPLC-SPE-NMR identification of a novel metabolite containing the benzo[c]oxepin skeleton from the endophytic fungus Pestalotiopsis virgatula culture.

HPLC-SPE-NMR analysis of a crude extract of fermentation broth of cultured PESTALOTIOPSIS VIRGATULA isolate TC-320 from TERMINALIA CHEBULA Retz. (Combretaceae) disclosed the presence of a simple but unprecedented low-molecular-weight metabolite, 9-hydroxybenzo[ C]oxepin-3[1 H]-one, subsequently isolated by a targeted purification procedure.

Potential of Tree Endophytes as Sources for New Drug Compounds

The novel or designer metabolites produced by fungal endophytes are increasingly recognized by natural chemists due to their diverse structures and as candidates for drug discovery and development. Many of the metabolites belong to different classes i.e. alkaloids, benzopyranones, coumarins, chromones, cytochalasines, enniatines, isocoumarin derivatives, quinones, peptides, phenols, phenolic acids, semiquinones, steroids, terpenoids, xanthones and lactones. One of the most widely studied endophytic genera is Pestalotiopsis, from which more than 140 metabolites are reported with antimicrobial, antioxidant and antitumor activities. Besides reviewing the advances made in identifying bioactive metabolites with drug development potential from endophytic fungi, this chapter discusses possibilities and bottlenecks involved in employment of endophytic fungi and their products by the pharmaceutical industry. Furthermore, issues involved in anti-infective discovery and timeline of drug development are discussed in the view of developing new drug compounds from endophytic products.

Long-term Impacts of Contrasting Management of Large Ungulates in the Arctic Tundra-Forest Ecotone: Ecosystem Structure and Climate Feedback

The arctic forest-tundra ecotone (FTE) represents a major transition zone between contrasting ecosystems, which can be strongly affected by climatic and biotic factors. Expected northward expansion and encroachment on arctic tundra in response to climate warming may be counteracted by natural and anthropogenic processes such as defoliating insect outbreaks and grazing/browsing regimes. Such natural and anthropogenic changes in land cover can substantially affect FTE dynamics, alter ground albedo (index of the amount of solar energy reflected back into the atmosphere) and provide important feedbacks into the climate system. We took advantage of a naturally occurring contrast between reindeer grazing regimes in a border region between northern Finland and Norway which was recently defoliated by an outbreak of the geometrid moth. We examined ecosystem-wide contrasts between potentially year-round (but mainly summer) grazed (YRG) regions in Finland and mainly winter grazed (WG) regions in Norway. We also used a remotely sensed vegetation index and albedo to quantify effects on local energy balance and potential climate feedbacks. Although differences in soil characteristics and ground vegetation cover were small, we found dramatic differences in the tree layer component of the ecosystem. Regeneration of mountain birch stands appears to have been severely hampered in the YRG regime, by limiting regeneration from basal shoots and reestablishment of individual trees from saplings. This has led to a more open forest structure and a significant 5% increase in spring albedo in the summer grazed compared to the winter grazed regions. This supports recent suggestions that ecosystem processes in the Arctic can significantly influence the climate system, and that such processes must be taken into account when developing climate change scenarios and adaptation strategies.

Bridged Epipolythiodiketopiperazines from Penicillium raciborskii, an Endophytic Fungus of Rhododendron tomentosum Harmaja

Three new epithiodiketopiperazine natural products [outovirin A (1), outovirin B (2), and outovirin C (3)] resembling the antifungal natural product gliovirin have been identified in extracts of Penicillium raciborskii, an endophytic fungus isolated from Rhododendron tomentosum. The compounds are unusual for their class in that they possess sulfide bridges between α- and β-carbons rather than the typical α-α bridging. To our knowledge, outovirin A represents the first reported naturally produced epimonothiodiketopiperazine, and antifungal outovirin C is the first reported trisulfide gliovirin-like compound. This report describes the identification and structural elucidation of the compounds by LC-MS/MS and NMR.